RNA–Protein interactions for RNA: ENST00000275036.11

HMGN3-201, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

TSL 1 (best) BASIC

Gene HMGN3, Length 831 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-201ENST00000275036 NFIAQ12857 509 aa17.82■□□□□ 0.44
HMGN3-201ENST00000275036 VGLL4Q14135 290 aa17.82■□□□□ 0.44
HMGN3-201ENST00000275036 MVPQ14764 893 aaKnown RBP17.82■□□□□ 0.44
HMGN3-201ENST00000275036 CDC42EP5Q6NZY7 148 aa17.82■□□□□ 0.44
HMGN3-201ENST00000275036 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.82■□□□□ 0.44
HMGN3-201ENST00000275036 RPAP1Q9BWH6 1393 aaPredicted RBP17.81■□□□□ 0.44
HMGN3-201ENST00000275036 PDS5AQ29RF7 1337 aaKnown RBP17.81■□□□□ 0.44
HMGN3-201ENST00000275036 SURF6O75683 361 aaKnown RBP17.81■□□□□ 0.44
HMGN3-201ENST00000275036 LDHBP07195 334 aaKnown RBP17.81■□□□□ 0.44
HMGN3-201ENST00000275036 PI16Q6UXB8 463 aa17.81■□□□□ 0.44
HMGN3-201ENST00000275036 FAM83AQ86UY5 434 aa17.81■□□□□ 0.44
HMGN3-201ENST00000275036 ZNF296Q8WUU4 475 aaPredicted RBP17.81■□□□□ 0.44
HMGN3-201ENST00000275036 NOP58Q9Y2X3 529 aaKnown RBP17.81■□□□□ 0.44
HMGN3-201ENST00000275036 MANSC4A6NHS7 340 aaPredicted RBP17.8■□□□□ 0.44
HMGN3-201ENST00000275036 FKBP1CQ5VVH2 108 aa17.8■□□□□ 0.44
HMGN3-201ENST00000275036 IFNL1Q8IU54 200 aa17.8■□□□□ 0.44
HMGN3-201ENST00000275036 ZNF384Q8TF68 577 aa17.8■□□□□ 0.44
HMGN3-201ENST00000275036 PTPN18Q99952 460 aa17.8■□□□□ 0.44
HMGN3-201ENST00000275036 CFHR5Q9BXR6 569 aa17.8■□□□□ 0.44
HMGN3-201ENST00000275036 COG6Q9Y2V7 657 aa17.8■□□□□ 0.44
HMGN3-201ENST00000275036 RFX7Q2KHR2 1363 aa17.79■□□□□ 0.44
HMGN3-201ENST00000275036 CCDC85CA6NKD9 419 aa17.79■□□□□ 0.44
HMGN3-201ENST00000275036 GPR25O00155 361 aa17.79■□□□□ 0.44
HMGN3-201ENST00000275036 MS4A1P11836 297 aa17.79■□□□□ 0.44
HMGN3-201ENST00000275036 ARID4AP29374 1257 aaPredicted RBP17.79■□□□□ 0.44
HMGN3-201ENST00000275036 OS9Q13438 667 aaPredicted RBP17.79■□□□□ 0.44
HMGN3-201ENST00000275036 TNNI3KQ59H18 835 aa17.79■□□□□ 0.44
HMGN3-201ENST00000275036 C20orf194Q5TEA3 1177 aa17.79■□□□□ 0.44
HMGN3-201ENST00000275036 OPTNQ96CV9 577 aa17.79■□□□□ 0.44
HMGN3-201ENST00000275036 GPR108Q9NPR9 543 aa17.79■□□□□ 0.44
HMGN3-201ENST00000275036 TMOD2Q9NZR1 351 aa17.79■□□□□ 0.44
HMGN3-201ENST00000275036 HMG20BQ9P0W2 317 aa17.79■□□□□ 0.44
HMGN3-201ENST00000275036 FAM198AQ9UFP1 575 aa17.79■□□□□ 0.44
HMGN3-201ENST00000275036 SNCAIPQ9Y6H5 919 aa17.79■□□□□ 0.44
HMGN3-201ENST00000275036 FPGT-TNNI3KV9GXZ4 949 aa17.79■□□□□ 0.44
HMGN3-201ENST00000275036 GAKO14976 1311 aa17.78■□□□□ 0.44
HMGN3-201ENST00000275036 MAP3K9P80192 1104 aa17.78■□□□□ 0.44
HMGN3-201ENST00000275036 CTU1Q7Z7A3 348 aaKnown RBP17.78■□□□□ 0.44
HMGN3-201ENST00000275036 ZFPM1Q8IX07 1006 aa17.78■□□□□ 0.44
HMGN3-201ENST00000275036 MS4A4AQ96JQ5 239 aa17.78■□□□□ 0.44
HMGN3-201ENST00000275036 DBNDD2Q9BQY9 259 aa17.78■□□□□ 0.44
HMGN3-201ENST00000275036 ABCF2Q9UG63 623 aa17.78■□□□□ 0.44
HMGN3-201ENST00000275036 TESPA1A2RU30 521 aaPredicted RBP17.77■□□□□ 0.44
HMGN3-201ENST00000275036 MCAMP43121 646 aa17.77■□□□□ 0.44
HMGN3-201ENST00000275036 TCP10Q12799 353 aa17.77■□□□□ 0.44
HMGN3-201ENST00000275036 GORABQ5T7V8 394 aa17.77■□□□□ 0.44
HMGN3-201ENST00000275036 ZGPATQ8N5A5 531 aaKnown RBP17.77■□□□□ 0.44
HMGN3-201ENST00000275036 SPATA5Q8NB90 893 aa17.77■□□□□ 0.44
HMGN3-201ENST00000275036 FAM151AQ8WW52 585 aa17.77■□□□□ 0.44
HMGN3-201ENST00000275036 ZKSCAN4Q969J2 545 aaPredicted RBP17.77■□□□□ 0.44
HMGN3-201ENST00000275036 ZBTB40Q9NUA8 1239 aa17.77■□□□□ 0.44
HMGN3-201ENST00000275036 USP40Q9NVE5 1235 aa17.77■□□□□ 0.44
HMGN3-201ENST00000275036 DDX19BQ9UMR2 479 aa17.77■□□□□ 0.44
HMGN3-201ENST00000275036 NOM1Q5C9Z4 860 aaKnown RBP17.76■□□□□ 0.43
HMGN3-201ENST00000275036 TBC1D9Q6ZT07 1266 aa17.76■□□□□ 0.43
HMGN3-201ENST00000275036 MIGA2Q7L4E1 593 aa17.76■□□□□ 0.43
HMGN3-201ENST00000275036 SIRT2Q8IXJ6 389 aa17.76■□□□□ 0.43
HMGN3-201ENST00000275036 WRNIP1Q96S55 665 aa17.76■□□□□ 0.43
HMGN3-201ENST00000275036 TLR7Q9NYK1 1049 aaKnown RBP17.76■□□□□ 0.43
HMGN3-201ENST00000275036 EXOC6BQ9Y2D4 811 aa17.76■□□□□ 0.43
HMGN3-201ENST00000275036 DOCK2Q92608 1830 aa17.76■□□□□ 0.43
HMGN3-201ENST00000275036 ATRNL1Q5VV63 1379 aa17.76■□□□□ 0.43
HMGN3-201ENST00000275036 INHBEP58166 350 aa17.75■□□□□ 0.43
HMGN3-201ENST00000275036 MECOMQ03112 1051 aa17.75■□□□□ 0.43
HMGN3-201ENST00000275036 SH3BP5LQ7L8J4 393 aa17.75■□□□□ 0.43
HMGN3-201ENST00000275036 DZIP1Q86YF9 867 aaKnown RBP17.75■□□□□ 0.43
HMGN3-201ENST00000275036 BRI3BPQ8WY22 251 aa17.75■□□□□ 0.43
HMGN3-201ENST00000275036 OTUD5Q96G74 571 aa17.75■□□□□ 0.43
HMGN3-201ENST00000275036 DBNLQ9UJU6 430 aaKnown RBP17.75■□□□□ 0.43
HMGN3-201ENST00000275036 MAST2Q6P0Q8 1798 aa17.74■□□□□ 0.43
HMGN3-201ENST00000275036 CDK5RAP2Q96SN8 1893 aa17.74■□□□□ 0.43
HMGN3-201ENST00000275036 SPDYE5A6NIY4 337 aa17.74■□□□□ 0.43
HMGN3-201ENST00000275036 ALDH1A1P00352 501 aa17.74■□□□□ 0.43
HMGN3-201ENST00000275036 SLURP2P0DP57 97 aa17.74■□□□□ 0.43
HMGN3-201ENST00000275036 INPP5BP32019 993 aa17.74■□□□□ 0.43
HMGN3-201ENST00000275036 CAP1Q01518 475 aa17.74■□□□□ 0.43
HMGN3-201ENST00000275036 SPTY2D1Q68D10 685 aaPredicted RBP17.74■□□□□ 0.43
HMGN3-201ENST00000275036 EAF2Q96CJ1 260 aaPredicted RBP17.74■□□□□ 0.43
HMGN3-201ENST00000275036 FAM163AQ96GL9 167 aaPredicted RBP17.74■□□□□ 0.43
HMGN3-201ENST00000275036 CCDC8Q9H0W5 538 aaPredicted RBP17.74■□□□□ 0.43
HMGN3-201ENST00000275036 DDX4Q9NQI0 724 aaKnown RBP17.74■□□□□ 0.43
HMGN3-201ENST00000275036 SNRKQ9NRH2 765 aa17.74■□□□□ 0.43
HMGN3-201ENST00000275036 CSADQ9Y600 493 aa17.74■□□□□ 0.43
HMGN3-201ENST00000275036 MROH7-TTC4A0A0A0MT08 1334 aa17.73■□□□□ 0.43
HMGN3-201ENST00000275036 WDHD1O75717 1129 aaPredicted RBP17.73■□□□□ 0.43
HMGN3-201ENST00000275036 UQCRFS1P1P0C7P4 283 aa17.73■□□□□ 0.43
HMGN3-201ENST00000275036 BTDP43251 543 aa17.73■□□□□ 0.43
HMGN3-201ENST00000275036 RGS3P49796 1198 aa17.73■□□□□ 0.43
HMGN3-201ENST00000275036 CRHR2Q13324 411 aa17.73■□□□□ 0.43
HMGN3-201ENST00000275036 ERICH6Q7L0X2 663 aa17.73■□□□□ 0.43
HMGN3-201ENST00000275036 NSUN4Q96CB9 384 aaKnown RBP17.73■□□□□ 0.43
HMGN3-201ENST00000275036 IDI2Q9BXS1 227 aa17.73■□□□□ 0.43
HMGN3-201ENST00000275036 FKTNO75072 461 aa17.72■□□□□ 0.43
HMGN3-201ENST00000275036 RHBDL3P58872 404 aa17.72■□□□□ 0.43
HMGN3-201ENST00000275036 PDE3AQ14432 1141 aa17.72■□□□□ 0.43
HMGN3-201ENST00000275036 TTC39AQ5SRH9 613 aa17.72■□□□□ 0.43
HMGN3-201ENST00000275036 RPAP2Q8IXW5 612 aaPredicted RBP17.72■□□□□ 0.43
HMGN3-201ENST00000275036 ZNF341Q9BYN7 854 aa17.72■□□□□ 0.43
HMGN3-201ENST00000275036 ZNF112Q9UJU3 913 aa17.72■□□□□ 0.43
HMGN3-201ENST00000275036 HTTP42858 3142 aa17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms