RNA–Protein interactions for RNA: ENST00000267199.8

VPS33A-201, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS33A, Length 4,586 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-201ENST00000267199 KIF5BP33176 963 aa13.1□□□□□ -0.31
VPS33A-201ENST00000267199 PRPF4BQ13523 1007 aaKnown RBP13.1□□□□□ -0.31
VPS33A-201ENST00000267199 DDX17Q92841 729 aaKnown RBP13.1□□□□□ -0.31
VPS33A-201ENST00000267199 DESI2Q9BSY9 194 aa13.1□□□□□ -0.31
VPS33A-201ENST00000267199 ZNF287Q9HBT7 754 aa13.1□□□□□ -0.31
VPS33A-201ENST00000267199 STX8Q9UNK0 236 aa13.1□□□□□ -0.31
VPS33A-201ENST00000267199 LARGE1O95461 756 aa13.1□□□□□ -0.31
VPS33A-201ENST00000267199 CYLC1P35663 651 aaPredicted RBP13.1□□□□□ -0.31
VPS33A-201ENST00000267199 PTPN21Q16825 1174 aa13.1□□□□□ -0.31
VPS33A-201ENST00000267199 DZIP3Q86Y13 1208 aaKnown RBP13.1□□□□□ -0.31
VPS33A-201ENST00000267199 CERS3Q8IU89 383 aa13.1□□□□□ -0.31
VPS33A-201ENST00000267199 TRMT44Q8IYL2 757 aaKnown RBP13.1□□□□□ -0.31
VPS33A-201ENST00000267199 IGSF22Q8N9C0 903 aa13.1□□□□□ -0.31
VPS33A-201ENST00000267199 NAA15Q9BXJ9 866 aaKnown RBP13.1□□□□□ -0.31
VPS33A-201ENST00000267199 ANGEL1Q9UNK9 670 aaKnown RBP13.1□□□□□ -0.31
VPS33A-201ENST00000267199 MBD4O95243 580 aa13.1□□□□□ -0.31
VPS33A-201ENST00000267199 PDE4BQ07343 736 aa13.1□□□□□ -0.31
VPS33A-201ENST00000267199 VAT1LQ9HCJ6 419 aa13.1□□□□□ -0.31
VPS33A-201ENST00000267199 LRRC7Q96NW7 1537 aa13.1□□□□□ -0.31
VPS33A-201ENST00000267199 ANKRD62A6NC57 917 aa13.1□□□□□ -0.31
VPS33A-201ENST00000267199 TAF5LO75529 589 aa13.1□□□□□ -0.31
VPS33A-201ENST00000267199 ADKP55263 362 aaKnown RBP13.1□□□□□ -0.31
VPS33A-201ENST00000267199 ETF1P62495 437 aaKnown RBP13.1□□□□□ -0.31
VPS33A-201ENST00000267199 SEPT7Q16181 437 aaKnown RBP13.1□□□□□ -0.31
VPS33A-201ENST00000267199 EHBP1Q8NDI1 1231 aa13.1□□□□□ -0.31
VPS33A-201ENST00000267199 NFE2L3Q9Y4A8 694 aa13.1□□□□□ -0.31
VPS33A-201ENST00000267199 QRICH2Q9H0J4 1663 aa13.1□□□□□ -0.31
VPS33A-201ENST00000267199 SEC31AO94979 1220 aaKnown RBP13.09□□□□□ -0.31
VPS33A-201ENST00000267199 ZSCAN29Q8IWY8 852 aaPredicted RBP13.09□□□□□ -0.31
VPS33A-201ENST00000267199 KRI1Q8N9T8 703 aaKnown RBP13.09□□□□□ -0.31
VPS33A-201ENST00000267199 PI4K2BQ8TCG2 481 aa13.09□□□□□ -0.31
VPS33A-201ENST00000267199 KAT14Q9H8E8 782 aa13.09□□□□□ -0.31
VPS33A-201ENST00000267199 TCP11L1Q9NUJ3 509 aa13.09□□□□□ -0.31
VPS33A-201ENST00000267199 DBNLQ9UJU6 430 aaKnown RBP13.09□□□□□ -0.31
VPS33A-201ENST00000267199 ELP1O95163 1332 aa13.09□□□□□ -0.31
VPS33A-201ENST00000267199 ARHGAP31Q2M1Z3 1444 aa13.09□□□□□ -0.31
VPS33A-201ENST00000267199 UBA5Q9GZZ9 404 aa13.09□□□□□ -0.31
VPS33A-201ENST00000267199 IMPACTQ9P2X3 320 aa13.09□□□□□ -0.31
VPS33A-201ENST00000267199 GOLGA6L10A0A0M3HER8 536 aa13.09□□□□□ -0.31
VPS33A-201ENST00000267199 ARHGAP6O43182 974 aa13.09□□□□□ -0.31
VPS33A-201ENST00000267199 ITGA6P23229 1130 aa13.09□□□□□ -0.31
VPS33A-201ENST00000267199 GBP2P32456 591 aaPredicted RBP13.09□□□□□ -0.31
VPS33A-201ENST00000267199 NF2P35240 595 aa13.09□□□□□ -0.31
VPS33A-201ENST00000267199 ZAP70P43403 619 aa13.09□□□□□ -0.31
VPS33A-201ENST00000267199 FAM76AQ8TAV0 307 aa13.09□□□□□ -0.31
VPS33A-201ENST00000267199 MYL10Q9BUA6 226 aa13.09□□□□□ -0.31
VPS33A-201ENST00000267199 VPS16Q9H269 839 aa13.09□□□□□ -0.31
VPS33A-201ENST00000267199 NIP7Q9Y221 180 aaKnown RBP eCLIP13.09□□□□□ -0.31
VPS33A-201ENST00000267199 ZDHHC9Q9Y397 364 aa13.09□□□□□ -0.31
VPS33A-201ENST00000267199 UBXN1Q04323 297 aa13.08□□□□□ -0.31
VPS33A-201ENST00000267199 ARID5BQ14865 1188 aa13.08□□□□□ -0.31
VPS33A-201ENST00000267199 ZNF589Q86UQ0 364 aaPredicted RBP13.08□□□□□ -0.31
VPS33A-201ENST00000267199 PHKBQ93100 1093 aa13.08□□□□□ -0.31
VPS33A-201ENST00000267199 PCDH11XQ9BZA7 1347 aa13.08□□□□□ -0.31
VPS33A-201ENST00000267199 PCDH11YQ9BZA8 1340 aa13.08□□□□□ -0.31
VPS33A-201ENST00000267199 SPAG1Q07617 926 aa13.08□□□□□ -0.32
VPS33A-201ENST00000267199 CCDC122Q5T0U0 273 aa13.08□□□□□ -0.32
VPS33A-201ENST00000267199 GPIHBP1Q8IV16 184 aa13.08□□□□□ -0.32
VPS33A-201ENST00000267199 IFT81Q8WYA0 676 aa13.08□□□□□ -0.32
VPS33A-201ENST00000267199 MAPK8IP1Q9UQF2 711 aa13.08□□□□□ -0.32
VPS33A-201ENST00000267199 TULP4Q9NRJ4 1543 aa13.08□□□□□ -0.32
VPS33A-201ENST00000267199 MACROD2A1Z1Q3 448 aa13.08□□□□□ -0.32
VPS33A-201ENST00000267199 BMP15O95972 392 aa13.08□□□□□ -0.32
VPS33A-201ENST00000267199 KIF5AQ12840 1032 aa13.08□□□□□ -0.32
VPS33A-201ENST00000267199 ANKRD18AQ8IVF6 992 aa13.08□□□□□ -0.32
VPS33A-201ENST00000267199 AFAP1L1Q8TED9 768 aa13.08□□□□□ -0.32
VPS33A-201ENST00000267199 ACSBG1Q96GR2 724 aa13.08□□□□□ -0.32
VPS33A-201ENST00000267199 DSCC1Q9BVC3 393 aa13.08□□□□□ -0.32
VPS33A-201ENST00000267199 ADGRB3O60242 1522 aa13.08□□□□□ -0.32
VPS33A-201ENST00000267199 KRT86O43790 486 aa13.08□□□□□ -0.32
VPS33A-201ENST00000267199 RBM5P52756 815 aaKnown RBP eCLIP13.08□□□□□ -0.32
VPS33A-201ENST00000267199 NCBP1Q09161 790 aaKnown RBP13.08□□□□□ -0.32
VPS33A-201ENST00000267199 COPRSQ9NQ92 184 aa13.08□□□□□ -0.32
VPS33A-201ENST00000267199 KCNH3Q9ULD8 1083 aa13.08□□□□□ -0.32
VPS33A-201ENST00000267199 CCDC40Q4G0X9 1142 aa13.07□□□□□ -0.32
VPS33A-201ENST00000267199 TTLL7Q6ZT98 887 aa13.07□□□□□ -0.32
VPS33A-201ENST00000267199 CRNKL1Q9BZJ0 848 aaKnown RBP13.07□□□□□ -0.32
VPS33A-201ENST00000267199 PRM3Q9NNZ6 103 aa13.07□□□□□ -0.32
VPS33A-201ENST00000267199 GOLGA8FQ08AF8 430 aa13.07□□□□□ -0.32
VPS33A-201ENST00000267199 GOLGA8DPQ0D2H9 430 aa13.07□□□□□ -0.32
VPS33A-201ENST00000267199 POLA2Q14181 598 aa13.07□□□□□ -0.32
VPS33A-201ENST00000267199 SPTY2D1Q68D10 685 aaPredicted RBP13.07□□□□□ -0.32
VPS33A-201ENST00000267199 MRFAP1L1Q96HT8 127 aa13.07□□□□□ -0.32
VPS33A-201ENST00000267199 PHKG2P15735 406 aa13.07□□□□□ -0.32
VPS33A-201ENST00000267199 NLRP12P59046 1061 aa13.07□□□□□ -0.32
VPS33A-201ENST00000267199 C11orf57Q6ZUT1 292 aaPredicted RBP13.07□□□□□ -0.32
VPS33A-201ENST00000267199 FTOQ9C0B1 505 aaKnown RBP eCLIP13.07□□□□□ -0.32
VPS33A-201ENST00000267199 MPHOSPH10O00566 681 aaKnown RBP13.06□□□□□ -0.32
VPS33A-201ENST00000267199 OPA1O60313 960 aa13.06□□□□□ -0.32
VPS33A-201ENST00000267199 CYP21A2P08686 494 aa13.06□□□□□ -0.32
VPS33A-201ENST00000267199 HSPD1P10809 573 aaKnown RBP13.06□□□□□ -0.32
VPS33A-201ENST00000267199 ARID5AQ03989 594 aa13.06□□□□□ -0.32
VPS33A-201ENST00000267199 KRT40Q6A162 431 aa13.06□□□□□ -0.32
VPS33A-201ENST00000267199 FBXO38Q6PIJ6 1188 aa13.06□□□□□ -0.32
VPS33A-201ENST00000267199 CCDC42Q96M95 316 aa13.06□□□□□ -0.32
VPS33A-201ENST00000267199 PLIN2Q99541 437 aa13.06□□□□□ -0.32
VPS33A-201ENST00000267199 HAUS7Q99871 368 aa13.06□□□□□ -0.32
VPS33A-201ENST00000267199 MMRN2Q9H8L6 949 aa13.06□□□□□ -0.32
VPS33A-201ENST00000267199 CABP5Q9NP86 173 aa13.06□□□□□ -0.32
VPS33A-201ENST00000267199 KIAA1468Q9P260 1216 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms