RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 PRDM1O75626 825 aa19.5■□□□□ 0.71
USP4-201ENST00000265560 MB21D2Q8IYB1 491 aaPredicted RBP19.5■□□□□ 0.71
USP4-201ENST00000265560 MPNDQ8N594 471 aa19.5■□□□□ 0.71
USP4-201ENST00000265560 MASTLQ96GX5 879 aa19.5■□□□□ 0.71
USP4-201ENST00000265560 KCNQ5Q9NR82 932 aa19.5■□□□□ 0.71
USP4-201ENST00000265560 LDHBP07195 334 aaKnown RBP19.49■□□□□ 0.71
USP4-201ENST00000265560 HMGB1P09429 215 aaKnown RBP19.49■□□□□ 0.71
USP4-201ENST00000265560 GTF2IP78347 998 aa19.49■□□□□ 0.71
USP4-201ENST00000265560 TRDNQ13061 729 aa19.49■□□□□ 0.71
USP4-201ENST00000265560 SP8Q8IXZ3 490 aa19.49■□□□□ 0.71
USP4-201ENST00000265560 H0YIN7 160 aa19.49■□□□□ 0.71
USP4-201ENST00000265560 SEMA3EO15041 775 aa19.49■□□□□ 0.71
USP4-201ENST00000265560 DPP8Q6V1X1 898 aaPredicted RBP19.49■□□□□ 0.71
USP4-201ENST00000265560 FERMT3Q86UX7 667 aa19.49■□□□□ 0.71
USP4-201ENST00000265560 BRPF3Q9ULD4 1205 aa19.49■□□□□ 0.71
USP4-201ENST00000265560 CHD4Q14839 1912 aa19.49■□□□□ 0.71
USP4-201ENST00000265560 HMGB2P26583 209 aaKnown RBP19.49■□□□□ 0.71
USP4-201ENST00000265560 MCM5P33992 734 aa19.49■□□□□ 0.71
USP4-201ENST00000265560 CCDC144CPQ8IYA2 1237 aa19.49■□□□□ 0.71
USP4-201ENST00000265560 ZBTB7AO95365 584 aa19.48■□□□□ 0.71
USP4-201ENST00000265560 BRD1O95696 1058 aa19.48■□□□□ 0.71
USP4-201ENST00000265560 NACAP1Q9BZK3 213 aa19.48■□□□□ 0.71
USP4-201ENST00000265560 TCHHQ07283 1943 aa19.48■□□□□ 0.71
USP4-201ENST00000265560 MFSD14BQ5SR56 506 aa19.48■□□□□ 0.71
USP4-201ENST00000265560 ALDH1B1P30837 517 aa19.47■□□□□ 0.71
USP4-201ENST00000265560 MYL10Q9BUA6 226 aa19.47■□□□□ 0.71
USP4-201ENST00000265560 DBNDD1Q9H9R9 158 aa19.47■□□□□ 0.71
USP4-201ENST00000265560 STX6O43752 255 aa19.47■□□□□ 0.71
USP4-201ENST00000265560 TRAK2O60296 914 aa19.47■□□□□ 0.71
USP4-201ENST00000265560 CYP2D6P10635 497 aa19.47■□□□□ 0.71
USP4-201ENST00000265560 GTF3C6Q969F1 213 aa19.47■□□□□ 0.71
USP4-201ENST00000265560 ZC3H12CQ9C0D7 883 aaKnown RBP19.47■□□□□ 0.71
USP4-201ENST00000265560 ZSWIM5Q9P217 1185 aa19.47■□□□□ 0.71
USP4-201ENST00000265560 COL11A2P13942 1736 aaPredicted RBP19.47■□□□□ 0.71
USP4-201ENST00000265560 USP17L12C9JPN9 530 aa19.47■□□□□ 0.71
USP4-201ENST00000265560 USP17L21D6R901 530 aa19.47■□□□□ 0.71
USP4-201ENST00000265560 FAM173BQ6P4H8 233 aa19.47■□□□□ 0.71
USP4-201ENST00000265560 KLF18A0A0U1RQI7 1052 aa19.46■□□□□ 0.71
USP4-201ENST00000265560 PDIA3P30101 505 aaKnown RBP19.46■□□□□ 0.71
USP4-201ENST00000265560 LARP1BQ659C4 914 aaKnown RBP19.46■□□□□ 0.71
USP4-201ENST00000265560 PODXL2Q9NZ53 605 aa19.46■□□□□ 0.71
USP4-201ENST00000265560 ATF5Q9Y2D1 282 aaPredicted RBP19.46■□□□□ 0.71
USP4-201ENST00000265560 PRPF40AO75400 957 aaKnown RBP19.46■□□□□ 0.71
USP4-201ENST00000265560 WDR66Q8TBY9 1149 aa19.46■□□□□ 0.71
USP4-201ENST00000265560 MFSD6Q6ZSS7 791 aa19.45■□□□□ 0.7
USP4-201ENST00000265560 ALDH8A1Q9H2A2 487 aaPredicted RBP19.45■□□□□ 0.7
USP4-201ENST00000265560 PPP1R1BQ9UD71 204 aaPredicted RBP19.45■□□□□ 0.7
USP4-201ENST00000265560 G3V3G9 751 aa19.45■□□□□ 0.7
USP4-201ENST00000265560 PPARAQ07869 468 aa19.45■□□□□ 0.7
USP4-201ENST00000265560 DCAF8Q5TAQ9 597 aa19.45■□□□□ 0.7
USP4-201ENST00000265560 SLX4Q8IY92 1834 aa19.45■□□□□ 0.7
USP4-201ENST00000265560 AKNAD1Q5T1N1 836 aa19.45■□□□□ 0.7
USP4-201ENST00000265560 SH3RF3Q8TEJ3 882 aaPredicted RBP19.45■□□□□ 0.7
USP4-201ENST00000265560 CHMP4CQ96CF2 233 aa19.45■□□□□ 0.7
USP4-201ENST00000265560 GNAT2P19087 354 aa19.44■□□□□ 0.7
USP4-201ENST00000265560 ALX1Q15699 326 aa19.44■□□□□ 0.7
USP4-201ENST00000265560 TMX4Q9H1E5 349 aaPredicted RBP19.44■□□□□ 0.7
USP4-201ENST00000265560 CTDNEP1O95476 244 aa19.44■□□□□ 0.7
USP4-201ENST00000265560 USP17L8P0C7I0 530 aa19.44■□□□□ 0.7
USP4-201ENST00000265560 NCLP19338 710 aaKnown RBP19.44■□□□□ 0.7
USP4-201ENST00000265560 GOLGA8BA8MQT2 603 aa19.43■□□□□ 0.7
USP4-201ENST00000265560 CDC37L1Q7L3B6 337 aa19.43■□□□□ 0.7
USP4-201ENST00000265560 C21orf2O43822 256 aa19.43■□□□□ 0.7
USP4-201ENST00000265560 IL1R1P14778 569 aa19.43■□□□□ 0.7
USP4-201ENST00000265560 GUCY1B3Q02153 619 aa19.43■□□□□ 0.7
USP4-201ENST00000265560 CTR9Q6PD62 1173 aa19.42■□□□□ 0.7
USP4-201ENST00000265560 MICU3Q86XE3 530 aa19.42■□□□□ 0.7
USP4-201ENST00000265560 KLHL34Q8N239 644 aa19.42■□□□□ 0.7
USP4-201ENST00000265560 AGXT2Q9BYV1 514 aa19.42■□□□□ 0.7
USP4-201ENST00000265560 DCP1AQ9NPI6 582 aaPredicted RBP19.42■□□□□ 0.7
USP4-201ENST00000265560 WDR33Q9C0J8 1336 aaKnown RBP19.42■□□□□ 0.7
USP4-201ENST00000265560 DDX11L8A8MPP1 907 aa19.42■□□□□ 0.7
USP4-201ENST00000265560 PFKFB2O60825 505 aa19.42■□□□□ 0.7
USP4-201ENST00000265560 ZSCAN22P10073 491 aaPredicted RBP19.42■□□□□ 0.7
USP4-201ENST00000265560 SCNN1DP51172 638 aa19.42■□□□□ 0.7
USP4-201ENST00000265560 SPTY2D1Q68D10 685 aaPredicted RBP19.42■□□□□ 0.7
USP4-201ENST00000265560 TGFBRAP1Q8WUH2 860 aa19.42■□□□□ 0.7
USP4-201ENST00000265560 SAP30BPQ9UHR5 308 aaKnown RBP19.42■□□□□ 0.7
USP4-201ENST00000265560 MTMR6Q9Y217 621 aa19.42■□□□□ 0.7
USP4-201ENST00000265560 NRXN2Q9P2S2 1712 aa19.42■□□□□ 0.7
USP4-201ENST00000265560 NFXL1Q6ZNB6 911 aa19.42■□□□□ 0.7
USP4-201ENST00000265560 MCM9Q9NXL9 1143 aa19.42■□□□□ 0.7
USP4-201ENST00000265560 MYH2Q9UKX2 1941 aa19.41■□□□□ 0.7
USP4-201ENST00000265560 IFIT3O14879 490 aaKnown RBP19.41■□□□□ 0.7
USP4-201ENST00000265560 RANBP6O60518 1105 aaKnown RBP19.41■□□□□ 0.7
USP4-201ENST00000265560 DEKP35659 375 aaKnown RBP19.41■□□□□ 0.7
USP4-201ENST00000265560 TMEM67Q5HYA8 995 aa19.41■□□□□ 0.7
USP4-201ENST00000265560 GJB4Q9NTQ9 266 aa19.41■□□□□ 0.7
USP4-201ENST00000265560 CCDC88AQ3V6T2 1871 aa19.41■□□□□ 0.7
USP4-201ENST00000265560 MAPKAPK5Q8IW41 473 aa19.41■□□□□ 0.7
USP4-201ENST00000265560 CERS5Q8N5B7 392 aa19.41■□□□□ 0.7
USP4-201ENST00000265560 CRNKL1Q9BZJ0 848 aaKnown RBP19.41■□□□□ 0.7
USP4-201ENST00000265560 HPS5Q9UPZ3 1129 aa19.41■□□□□ 0.7
USP4-201ENST00000265560 ADD1P35611 737 aaKnown RBP19.4■□□□□ 0.7
USP4-201ENST00000265560 USP5P45974 858 aa19.4■□□□□ 0.7
USP4-201ENST00000265560 C15orf52Q6ZUT6 534 aaKnown RBP19.4■□□□□ 0.7
USP4-201ENST00000265560 NSUN7Q8NE18 718 aaKnown RBP19.4■□□□□ 0.7
USP4-201ENST00000265560 PTPDC1A2A3K4 754 aa19.4■□□□□ 0.7
USP4-201ENST00000265560 OTUD7BQ6GQQ9 843 aa19.4■□□□□ 0.7
USP4-201ENST00000265560 CCDC82Q8N4S0 544 aa19.4■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 71.7 ms