RNA–Protein interactions for RNA: ENST00000254480.9

SMARCC1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMARCC1, Length 6,375 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-201ENST00000254480 TXKP42681 527 aa21.07■□□□□ 0.96
SMARCC1-201ENST00000254480 TRAF1Q13077 416 aa21.07■□□□□ 0.96
SMARCC1-201ENST00000254480 EYA3Q99504 573 aa21.07■□□□□ 0.96
SMARCC1-201ENST00000254480 DENND2AQ9ULE3 1009 aa21.07■□□□□ 0.96
SMARCC1-201ENST00000254480 SUCLG2Q96I99 432 aa21.07■□□□□ 0.96
SMARCC1-201ENST00000254480 PNMA6EA0A0J9YXQ4 647 aa21.07■□□□□ 0.96
SMARCC1-201ENST00000254480 CCDC169A6NNP5 214 aa21.07■□□□□ 0.96
SMARCC1-201ENST00000254480 RPS6KB1P23443 525 aa21.07■□□□□ 0.96
SMARCC1-201ENST00000254480 USH1GQ495M9 461 aa21.07■□□□□ 0.96
SMARCC1-201ENST00000254480 BIN2Q9UBW5 565 aaPredicted RBP21.07■□□□□ 0.96
SMARCC1-201ENST00000254480 RSPH14Q9UHP6 348 aa21.07■□□□□ 0.96
SMARCC1-201ENST00000254480 GIGYF2Q6Y7W6 1299 aaKnown RBP21.07■□□□□ 0.96
SMARCC1-201ENST00000254480 MAPKBP1O60336 1514 aa21.07■□□□□ 0.96
SMARCC1-201ENST00000254480 METTL22Q9BUU2 404 aaPredicted RBP21.06■□□□□ 0.96
SMARCC1-201ENST00000254480 TBC1D7Q9P0N9 293 aa21.06■□□□□ 0.96
SMARCC1-201ENST00000254480 MYCLP12524 364 aaPredicted RBP21.06■□□□□ 0.96
SMARCC1-201ENST00000254480 BIRC3Q13489 604 aa21.06■□□□□ 0.96
SMARCC1-201ENST00000254480 PLBD2Q8NHP8 589 aa21.06■□□□□ 0.96
SMARCC1-201ENST00000254480 USP19O94966 1318 aa21.06■□□□□ 0.96
SMARCC1-201ENST00000254480 GPAA1O43292 621 aa21.06■□□□□ 0.96
SMARCC1-201ENST00000254480 IQUBQ8NA54 791 aa21.06■□□□□ 0.96
SMARCC1-201ENST00000254480 CCDC114Q96M63 670 aa21.06■□□□□ 0.96
SMARCC1-201ENST00000254480 BICDL2A1A5D9 508 aa21.06■□□□□ 0.96
SMARCC1-201ENST00000254480 KRT86O43790 486 aa21.06■□□□□ 0.96
SMARCC1-201ENST00000254480 RASAL2Q9UJF2 1139 aa21.06■□□□□ 0.96
SMARCC1-201ENST00000254480 KRT9P35527 623 aa21.06■□□□□ 0.96
SMARCC1-201ENST00000254480 FBF1Q8TES7 1133 aa21.06■□□□□ 0.96
SMARCC1-201ENST00000254480 IGSF3O75054 1194 aa21.05■□□□□ 0.96
SMARCC1-201ENST00000254480 NCBP1Q09161 790 aaKnown RBP21.05■□□□□ 0.96
SMARCC1-201ENST00000254480 TTC6Q86TZ1 520 aa21.05■□□□□ 0.96
SMARCC1-201ENST00000254480 ATP6V0A2Q9Y487 856 aa21.05■□□□□ 0.96
SMARCC1-201ENST00000254480 PUM3Q15397 648 aaKnown RBP21.05■□□□□ 0.96
SMARCC1-201ENST00000254480 HELLSQ9NRZ9 838 aa21.05■□□□□ 0.96
SMARCC1-201ENST00000254480 CPXCR1Q8N123 301 aa21.05■□□□□ 0.96
SMARCC1-201ENST00000254480 EDC3Q96F86 508 aaKnown RBP21.05■□□□□ 0.96
SMARCC1-201ENST00000254480 LONRF3Q496Y0 759 aa21.05■□□□□ 0.96
SMARCC1-201ENST00000254480 SV2BQ7L1I2 683 aa21.05■□□□□ 0.96
SMARCC1-201ENST00000254480 MRRFQ96E11 262 aaKnown RBP21.05■□□□□ 0.96
SMARCC1-201ENST00000254480 KRT83P78385 493 aa21.04■□□□□ 0.96
SMARCC1-201ENST00000254480 PDE4DQ08499 809 aa21.04■□□□□ 0.96
SMARCC1-201ENST00000254480 BRAPQ7Z569 592 aa21.04■□□□□ 0.96
SMARCC1-201ENST00000254480 PRIMPOLQ96LW4 560 aa21.04■□□□□ 0.96
SMARCC1-201ENST00000254480 SMC5Q8IY18 1101 aa21.04■□□□□ 0.96
SMARCC1-201ENST00000254480 SH3TC1Q8TE82 1336 aa21.04■□□□□ 0.96
SMARCC1-201ENST00000254480 LUC7L2Q9Y383 392 aaKnown RBP21.04■□□□□ 0.96
SMARCC1-201ENST00000254480 STAMQ92783 540 aa21.04■□□□□ 0.96
SMARCC1-201ENST00000254480 CALCOCO1Q9P1Z2 691 aa21.04■□□□□ 0.96
SMARCC1-201ENST00000254480 SNX14Q9Y5W7 946 aa21.03■□□□□ 0.96
SMARCC1-201ENST00000254480 YTHDC2Q9H6S0 1430 aaKnown RBP21.03■□□□□ 0.96
SMARCC1-201ENST00000254480 KIF4AO95239 1232 aa21.03■□□□□ 0.96
SMARCC1-201ENST00000254480 DNAJC10Q8IXB1 793 aa21.03■□□□□ 0.96
SMARCC1-201ENST00000254480 RBM28Q9NW13 759 aaKnown RBP21.03■□□□□ 0.96
SMARCC1-201ENST00000254480 DYNC1I1O14576 645 aa21.03■□□□□ 0.96
SMARCC1-201ENST00000254480 MAPKAPK5Q8IW41 473 aa21.03■□□□□ 0.96
SMARCC1-201ENST00000254480 GPATCH11Q8N954 259 aa21.03■□□□□ 0.96
SMARCC1-201ENST00000254480 ZMYM3Q14202 1370 aa21.03■□□□□ 0.96
SMARCC1-201ENST00000254480 POLR2DO15514 142 aaKnown RBP21.03■□□□□ 0.96
SMARCC1-201ENST00000254480 ZEB2O60315 1214 aa21.03■□□□□ 0.96
SMARCC1-201ENST00000254480 NOC4LQ9BVI4 516 aaKnown RBP21.03■□□□□ 0.96
SMARCC1-201ENST00000254480 NBPF14Q5TI25 921 aa21.02■□□□□ 0.96
SMARCC1-201ENST00000254480 GGA1Q9UJY5 639 aa21.02■□□□□ 0.96
SMARCC1-201ENST00000254480 ZNF518AQ6AHZ1 1483 aa21.02■□□□□ 0.96
SMARCC1-201ENST00000254480 IRX5P78411 483 aaPredicted RBP21.02■□□□□ 0.96
SMARCC1-201ENST00000254480 NCAPH2Q6IBW4 605 aa21.02■□□□□ 0.96
SMARCC1-201ENST00000254480 KCNJ14Q9UNX9 436 aa21.02■□□□□ 0.96
SMARCC1-201ENST00000254480 PPP1R7Q15435 360 aa21.02■□□□□ 0.96
SMARCC1-201ENST00000254480 IL13P35225 146 aa21.02■□□□□ 0.95
SMARCC1-201ENST00000254480 FAM47AQ5JRC9 791 aa21.02■□□□□ 0.95
SMARCC1-201ENST00000254480 DYMQ7RTS9 669 aa21.02■□□□□ 0.95
SMARCC1-201ENST00000254480 GOLGA1Q92805 767 aa21.02■□□□□ 0.95
SMARCC1-201ENST00000254480 PDE8AO60658 829 aa21.01■□□□□ 0.95
SMARCC1-201ENST00000254480 ZAP70P43403 619 aa21.01■□□□□ 0.95
SMARCC1-201ENST00000254480 CMTR1Q8N1G2 835 aaKnown RBP21.01■□□□□ 0.95
SMARCC1-201ENST00000254480 ZKSCAN5Q9Y2L8 839 aa21.01■□□□□ 0.95
SMARCC1-201ENST00000254480 NUP153P49790 1475 aaKnown RBP21.01■□□□□ 0.95
SMARCC1-201ENST00000254480 UGGT2Q9NYU1 1516 aa21.01■□□□□ 0.95
SMARCC1-201ENST00000254480 SLU7O95391 586 aaKnown RBP21.01■□□□□ 0.95
SMARCC1-201ENST00000254480 TAF12Q16514 161 aa21.01■□□□□ 0.95
SMARCC1-201ENST00000254480 CCDC122Q5T0U0 273 aa21.01■□□□□ 0.95
SMARCC1-201ENST00000254480 MSL1Q68DK7 614 aa21.01■□□□□ 0.95
SMARCC1-201ENST00000254480 KRT222Q8N1A0 295 aa21.01■□□□□ 0.95
SMARCC1-201ENST00000254480 TRAF3IP1Q8TDR0 691 aaPredicted RBP21.01■□□□□ 0.95
SMARCC1-201ENST00000254480 KCNK9Q9NPC2 374 aa21.01■□□□□ 0.95
SMARCC1-201ENST00000254480 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP21.01■□□□□ 0.957e-7■■□□□ 14.1
SMARCC1-201ENST00000254480 SORBS3O60504 671 aa21■□□□□ 0.95
SMARCC1-201ENST00000254480 CCDC65Q8IXS2 484 aa21■□□□□ 0.95
SMARCC1-201ENST00000254480 VPS18Q9P253 973 aa21■□□□□ 0.95
SMARCC1-201ENST00000254480 LEO1Q8WVC0 666 aaPredicted RBP21■□□□□ 0.95
SMARCC1-201ENST00000254480 PICK1Q9NRD5 415 aa21■□□□□ 0.95
SMARCC1-201ENST00000254480 FRMD4BQ9Y2L6 1034 aa21■□□□□ 0.95
SMARCC1-201ENST00000254480 UAP1Q16222 522 aaPredicted RBP21■□□□□ 0.95
SMARCC1-201ENST00000254480 TGFBRAP1Q8WUH2 860 aa21■□□□□ 0.95
SMARCC1-201ENST00000254480 LMBR1Q8WVP7 490 aa21■□□□□ 0.95
SMARCC1-201ENST00000254480 FNBP1Q96RU3 617 aa21■□□□□ 0.95
SMARCC1-201ENST00000254480 ELP1O95163 1332 aa20.99■□□□□ 0.95
SMARCC1-201ENST00000254480 CCDC6Q16204 474 aa20.99■□□□□ 0.95
SMARCC1-201ENST00000254480 SLC52A2Q9HAB3 445 aa20.99■□□□□ 0.95
SMARCC1-201ENST00000254480 DPP8Q6V1X1 898 aaPredicted RBP20.99■□□□□ 0.95
SMARCC1-201ENST00000254480 CEP83Q9Y592 693 aa20.99■□□□□ 0.95
SMARCC1-201ENST00000254480 ANO1Q5XXA6 986 aa20.99■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms