RNA–Protein interactions for RNA: ENST00000253251.12

UBE4B-201, Transcript of ubiquitination factor E4B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UBE4B, Length 4,772 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE4B-201ENST00000253251 PPFIA3O75145 1194 aa17.1■□□□□ 0.33
UBE4B-201ENST00000253251 ADCY5O95622 1261 aa17.1■□□□□ 0.33
UBE4B-201ENST00000253251 POLA2Q14181 598 aa17.1■□□□□ 0.33
UBE4B-201ENST00000253251 GIMAP6Q6P9H5 292 aa17.1■□□□□ 0.33
UBE4B-201ENST00000253251 LARGE2Q8N3Y3 721 aa17.1■□□□□ 0.33
UBE4B-201ENST00000253251 ZNF274Q96GC6 653 aaPredicted RBP17.1■□□□□ 0.33
UBE4B-201ENST00000253251 JAKMIP3Q5VZ66 844 aa17.09■□□□□ 0.33
UBE4B-201ENST00000253251 NLRP10Q86W26 655 aa17.09■□□□□ 0.33
UBE4B-201ENST00000253251 IQUBQ8NA54 791 aa17.09■□□□□ 0.33
UBE4B-201ENST00000253251 NCOA3Q9Y6Q9 1424 aa17.09■□□□□ 0.33
UBE4B-201ENST00000253251 PDE6AP16499 860 aa17.09■□□□□ 0.33
UBE4B-201ENST00000253251 CHRNDQ07001 517 aa17.09■□□□□ 0.33
UBE4B-201ENST00000253251 DTHD1Q6ZMT9 781 aa17.09■□□□□ 0.33
UBE4B-201ENST00000253251 STK24Q9Y6E0 443 aa17.09■□□□□ 0.33
UBE4B-201ENST00000253251 OVOS2A0A0G2JMS6 1433 aa17.09■□□□□ 0.33
UBE4B-201ENST00000253251 OVOS2A0A0J9YW53 1432 aa17.09■□□□□ 0.33
UBE4B-201ENST00000253251 OVOS2Q6IE36 1432 aa17.09■□□□□ 0.33
UBE4B-201ENST00000253251 E7EWF7 191 aa17.09■□□□□ 0.33
UBE4B-201ENST00000253251 EIF6P56537 245 aaKnown RBP17.09■□□□□ 0.33
UBE4B-201ENST00000253251 RRAGBQ5VZM2 374 aa17.09■□□□□ 0.33
UBE4B-201ENST00000253251 TMED8Q6PL24 325 aaPredicted RBP17.09■□□□□ 0.33
UBE4B-201ENST00000253251 NUP88Q99567 741 aaPredicted RBP17.09■□□□□ 0.33
UBE4B-201ENST00000253251 SEPT11Q9NVA2 429 aaKnown RBP17.09■□□□□ 0.33
UBE4B-201ENST00000253251 AATFQ9NY61 560 aaKnown RBP eCLIP17.09■□□□□ 0.336e-7■□□□□ 11.1
UBE4B-201ENST00000253251 SAMM50Q9Y512 469 aa17.09■□□□□ 0.33
UBE4B-201ENST00000253251 KIF18AQ8NI77 898 aa17.09■□□□□ 0.33
UBE4B-201ENST00000253251 TRIM47Q96LD4 638 aa17.09■□□□□ 0.33
UBE4B-201ENST00000253251 SCLT1Q96NL6 688 aa17.09■□□□□ 0.33
UBE4B-201ENST00000253251 GREM2Q9H772 168 aa17.09■□□□□ 0.33
UBE4B-201ENST00000253251 NT5C2P49902 561 aa17.08■□□□□ 0.33
UBE4B-201ENST00000253251 PRKCSHP14314 528 aaPredicted RBP17.08■□□□□ 0.32
UBE4B-201ENST00000253251 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP17.08■□□□□ 0.324e-6■■■□□ 18.6
UBE4B-201ENST00000253251 XDHP47989 1333 aa17.08■□□□□ 0.32
UBE4B-201ENST00000253251 MARCKSP29966 332 aaPredicted RBP17.08■□□□□ 0.32
UBE4B-201ENST00000253251 LRRC24Q50LG9 513 aa17.08■□□□□ 0.32
UBE4B-201ENST00000253251 KRT27Q7Z3Y8 459 aa17.08■□□□□ 0.32
UBE4B-201ENST00000253251 ELP1O95163 1332 aa17.08■□□□□ 0.32
UBE4B-201ENST00000253251 H7C1W4 665 aa17.08■□□□□ 0.32
UBE4B-201ENST00000253251 BBOX1O75936 387 aa17.08■□□□□ 0.32
UBE4B-201ENST00000253251 MTX1Q13505 466 aa17.08■□□□□ 0.32
UBE4B-201ENST00000253251 PALLDQ8WX93 1383 aa17.07■□□□□ 0.32
UBE4B-201ENST00000253251 JAG2Q9Y219 1238 aa17.07■□□□□ 0.32
UBE4B-201ENST00000253251 LRRC7Q96NW7 1537 aa17.07■□□□□ 0.32
UBE4B-201ENST00000253251 CCDC172P0C7W6 258 aa17.07■□□□□ 0.32
UBE4B-201ENST00000253251 NIM1KQ8IY84 436 aa17.07■□□□□ 0.32
UBE4B-201ENST00000253251 CRB1P82279 1406 aa17.07■□□□□ 0.32
UBE4B-201ENST00000253251 CPA1P15085 419 aa17.07■□□□□ 0.32
UBE4B-201ENST00000253251 PPARAQ07869 468 aa17.07■□□□□ 0.32
UBE4B-201ENST00000253251 RBM26Q5T8P6 1007 aaKnown RBP17.07■□□□□ 0.32
UBE4B-201ENST00000253251 TEKT1Q969V4 418 aa17.07■□□□□ 0.32
UBE4B-201ENST00000253251 GBP3Q9H0R5 595 aa17.07■□□□□ 0.32
UBE4B-201ENST00000253251 AXIN2Q9Y2T1 843 aa17.07■□□□□ 0.32
UBE4B-201ENST00000253251 PLCD1P51178 756 aa17.06■□□□□ 0.32
UBE4B-201ENST00000253251 FAM160A1Q05DH4 1040 aa17.06■□□□□ 0.32
UBE4B-201ENST00000253251 TMC6Q7Z403 805 aa17.06■□□□□ 0.32
UBE4B-201ENST00000253251 SYCP3Q8IZU3 236 aa17.06■□□□□ 0.32
UBE4B-201ENST00000253251 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.06■□□□□ 0.32
UBE4B-201ENST00000253251 ZSWIM6Q9HCJ5 1215 aa17.06■□□□□ 0.32
UBE4B-201ENST00000253251 SAP30BPQ9UHR5 308 aaKnown RBP17.06■□□□□ 0.32
UBE4B-201ENST00000253251 USP32Q8NFA0 1604 aa17.06■□□□□ 0.32
UBE4B-201ENST00000253251 BICDL2A1A5D9 508 aa17.06■□□□□ 0.32
UBE4B-201ENST00000253251 ANO6Q4KMQ2 910 aa17.06■□□□□ 0.32
UBE4B-201ENST00000253251 DBNLQ9UJU6 430 aaKnown RBP17.06■□□□□ 0.32
UBE4B-201ENST00000253251 ZNF804BA4D1E1 1349 aa17.06■□□□□ 0.32
UBE4B-201ENST00000253251 N4BP3O15049 544 aa17.06■□□□□ 0.32
UBE4B-201ENST00000253251 ZKSCAN3Q9BRR0 538 aa17.06■□□□□ 0.32
UBE4B-201ENST00000253251 RXRBP28702 533 aa17.05■□□□□ 0.32
UBE4B-201ENST00000253251 DEPDC5O75140 1603 aa17.05■□□□□ 0.32
UBE4B-201ENST00000253251 A0A0D9SFI3 127 aa17.05■□□□□ 0.32
UBE4B-201ENST00000253251 ZMYM1Q5SVZ6 1142 aa17.05■□□□□ 0.32
UBE4B-201ENST00000253251 MCTP2Q6DN12 878 aa17.05■□□□□ 0.32
UBE4B-201ENST00000253251 ASIC1P78348 528 aa17.05■□□□□ 0.32
UBE4B-201ENST00000253251 MFSD14BQ5SR56 506 aa17.05■□□□□ 0.32
UBE4B-201ENST00000253251 ANO1Q5XXA6 986 aa17.05■□□□□ 0.32
UBE4B-201ENST00000253251 IFNL3Q8IZI9 196 aa17.05■□□□□ 0.32
UBE4B-201ENST00000253251 IQGAP1P46940 1657 aa17.05■□□□□ 0.32
UBE4B-201ENST00000253251 EIF3JO75822 258 aaKnown RBP17.05■□□□□ 0.32
UBE4B-201ENST00000253251 HSPD1P10809 573 aaKnown RBP17.05■□□□□ 0.32
UBE4B-201ENST00000253251 KRT25Q7Z3Z0 450 aa17.05■□□□□ 0.32
UBE4B-201ENST00000253251 FAM177A1Q8N128 213 aaPredicted RBP17.05■□□□□ 0.32
UBE4B-201ENST00000253251 AFMP43652 599 aa17.04■□□□□ 0.32
UBE4B-201ENST00000253251 TYRO3Q06418 890 aa17.04■□□□□ 0.32
UBE4B-201ENST00000253251 MAP4K1Q92918 833 aa17.04■□□□□ 0.32
UBE4B-201ENST00000253251 GTF3C6Q969F1 213 aa17.04■□□□□ 0.32
UBE4B-201ENST00000253251 CUTAO60888 179 aa17.04■□□□□ 0.32
UBE4B-201ENST00000253251 DHX58Q96C10 678 aa17.04■□□□□ 0.32
UBE4B-201ENST00000253251 ATP8A2Q9NTI2 1148 aa17.04■□□□□ 0.32
UBE4B-201ENST00000253251 RPS6KA4O75676 772 aa17.04■□□□□ 0.32
UBE4B-201ENST00000253251 TUBB4AP04350 444 aa17.04■□□□□ 0.32
UBE4B-201ENST00000253251 UBASH3AP57075 661 aa17.04■□□□□ 0.32
UBE4B-201ENST00000253251 UBXN4Q92575 508 aa17.04■□□□□ 0.32
UBE4B-201ENST00000253251 CEP170BQ9Y4F5 1589 aaPredicted RBP17.04■□□□□ 0.32
UBE4B-201ENST00000253251 RXRAP19793 462 aa17.03■□□□□ 0.32
UBE4B-201ENST00000253251 C2CD5Q86YS7 1000 aa17.03■□□□□ 0.32
UBE4B-201ENST00000253251 PDCL2Q8N4E4 241 aa17.03■□□□□ 0.32
UBE4B-201ENST00000253251 EHBP1Q8NDI1 1231 aa17.03■□□□□ 0.32
UBE4B-201ENST00000253251 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.03■□□□□ 0.325e-6■■■■■ 31.1
UBE4B-201ENST00000253251 ADRA2BP18089 450 aa17.03■□□□□ 0.32
UBE4B-201ENST00000253251 MCM3P25205 808 aa17.03■□□□□ 0.32
UBE4B-201ENST00000253251 PTPN12Q05209 780 aaKnown RBP17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms