RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 PTPN12Q05209 780 aaKnown RBP10.33□□□□□ -0.76
VPS4B-201ENST00000238497 STK3Q13188 491 aa10.33□□□□□ -0.76
VPS4B-201ENST00000238497 PUM3Q15397 648 aaKnown RBP10.33□□□□□ -0.76
VPS4B-201ENST00000238497 ATP2B3Q16720 1220 aa10.33□□□□□ -0.76
VPS4B-201ENST00000238497 CFAP100Q494V2 611 aa10.33□□□□□ -0.76
VPS4B-201ENST00000238497 CERS5Q8N5B7 392 aa10.33□□□□□ -0.76
VPS4B-201ENST00000238497 SNX21Q969T3 373 aa10.33□□□□□ -0.76
VPS4B-201ENST00000238497 CDCA5Q96FF9 252 aa10.33□□□□□ -0.76
VPS4B-201ENST00000238497 TMX3Q96JJ7 454 aa10.33□□□□□ -0.76
VPS4B-201ENST00000238497 FAM227BQ96M60 508 aa10.33□□□□□ -0.76
VPS4B-201ENST00000238497 GMLQ99445 158 aa10.33□□□□□ -0.76
VPS4B-201ENST00000238497 PANK2Q9BZ23 570 aa10.33□□□□□ -0.76
VPS4B-201ENST00000238497 SNRKQ9NRH2 765 aa10.33□□□□□ -0.76
VPS4B-201ENST00000238497 ECHDC1Q9NTX5 307 aa10.33□□□□□ -0.76
VPS4B-201ENST00000238497 PCDHAC2Q9Y5I4 1007 aa10.33□□□□□ -0.76
VPS4B-201ENST00000238497 SCN9AQ15858 1988 aa10.33□□□□□ -0.76
VPS4B-201ENST00000238497 CASTP20810 708 aaKnown RBP10.33□□□□□ -0.76
VPS4B-201ENST00000238497 ZNF280AP59817 542 aaPredicted RBP10.33□□□□□ -0.76
VPS4B-201ENST00000238497 MKRN3Q13064 507 aaKnown RBP10.33□□□□□ -0.76
VPS4B-201ENST00000238497 MOB2Q70IA6 237 aa10.33□□□□□ -0.76
VPS4B-201ENST00000238497 SAPCD2Q86UD0 394 aa10.33□□□□□ -0.76
VPS4B-201ENST00000238497 GLRX3O76003 335 aaKnown RBP10.33□□□□□ -0.76
VPS4B-201ENST00000238497 TFCP2Q12800 502 aa10.33□□□□□ -0.76
VPS4B-201ENST00000238497 SLFNL1Q499Z3 407 aa10.33□□□□□ -0.76
VPS4B-201ENST00000238497 CAVIN1Q6NZI2 390 aaKnown RBP10.33□□□□□ -0.76
VPS4B-201ENST00000238497 JMYQ8N9B5 988 aa10.33□□□□□ -0.76
VPS4B-201ENST00000238497 JAKMIP1Q96N16 626 aaKnown RBP10.33□□□□□ -0.76
VPS4B-201ENST00000238497 DDX11L8A8MPP1 907 aa10.32□□□□□ -0.76
VPS4B-201ENST00000238497 LRRC37AA6NMS7 1700 aa10.32□□□□□ -0.76
VPS4B-201ENST00000238497 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.32□□□□□ -0.76
VPS4B-201ENST00000238497 RASSF10A6NK89 507 aa10.32□□□□□ -0.76
VPS4B-201ENST00000238497 UBE2Q2LH0YL09 131 aa10.32□□□□□ -0.76
VPS4B-201ENST00000238497 GNL3LQ9NVN8 582 aaKnown RBP10.32□□□□□ -0.76
VPS4B-201ENST00000238497 TLL2Q9Y6L7 1015 aa10.32□□□□□ -0.76
VPS4B-201ENST00000238497 PGAP2Q9UHJ9 254 aa10.32□□□□□ -0.76
VPS4B-201ENST00000238497 IL1R1P14778 569 aa10.31□□□□□ -0.76
VPS4B-201ENST00000238497 IL15P40933 162 aaPredicted RBP10.31□□□□□ -0.76
VPS4B-201ENST00000238497 PTH1RQ03431 593 aa10.31□□□□□ -0.76
VPS4B-201ENST00000238497 COL13A1Q5TAT6 717 aaPredicted RBP10.31□□□□□ -0.76
VPS4B-201ENST00000238497 LPIN2Q92539 896 aa10.31□□□□□ -0.76
VPS4B-201ENST00000238497 ABCF2Q9UG63 623 aa10.31□□□□□ -0.76
VPS4B-201ENST00000238497 FZD1Q9UP38 647 aa10.31□□□□□ -0.76
VPS4B-201ENST00000238497 RASEFQ8IZ41 740 aa10.31□□□□□ -0.76
VPS4B-201ENST00000238497 TDRD7Q8NHU6 1098 aaKnown RBP10.31□□□□□ -0.76
VPS4B-201ENST00000238497 PRMT6Q96LA8 375 aaPredicted RBP10.31□□□□□ -0.76
VPS4B-201ENST00000238497 POLR2AP24928 1970 aaKnown RBP10.31□□□□□ -0.76
VPS4B-201ENST00000238497 FOXN1O15353 648 aa10.3□□□□□ -0.76
VPS4B-201ENST00000238497 KDM4AO75164 1064 aa10.3□□□□□ -0.76
VPS4B-201ENST00000238497 RFX5P48382 616 aaPredicted RBP10.3□□□□□ -0.76
VPS4B-201ENST00000238497 MAP2K1Q02750 393 aaPredicted RBP10.3□□□□□ -0.76
VPS4B-201ENST00000238497 CCDC129Q6ZRS4 1044 aa10.3□□□□□ -0.76
VPS4B-201ENST00000238497 NECAB1Q8N987 351 aa10.3□□□□□ -0.76
VPS4B-201ENST00000238497 DBNDD2Q9BQY9 259 aa10.3□□□□□ -0.76
VPS4B-201ENST00000238497 TDRD3Q9H7E2 651 aaKnown RBP10.3□□□□□ -0.76
VPS4B-201ENST00000238497 TCP10L2B9ZVM9 353 aa10.3□□□□□ -0.76
VPS4B-201ENST00000238497 EIF5BO60841 1220 aaKnown RBP10.3□□□□□ -0.76
VPS4B-201ENST00000238497 BAG4O95429 457 aaKnown RBP10.3□□□□□ -0.76
VPS4B-201ENST00000238497 PLCB2Q00722 1185 aa10.3□□□□□ -0.76
VPS4B-201ENST00000238497 TNS4Q8IZW8 715 aa10.3□□□□□ -0.76
VPS4B-201ENST00000238497 PI4K2BQ8TCG2 481 aa10.3□□□□□ -0.76
VPS4B-201ENST00000238497 RUFY2Q8WXA3 655 aa10.3□□□□□ -0.76
VPS4B-201ENST00000238497 LRRC2Q9BYS8 371 aa10.3□□□□□ -0.76
VPS4B-201ENST00000238497 DEFB129Q9H1M3 183 aa10.3□□□□□ -0.76
VPS4B-201ENST00000238497 RBM27Q9P2N5 1060 aaKnown RBP10.3□□□□□ -0.76
VPS4B-201ENST00000238497 ANGEL1Q9UNK9 670 aaKnown RBP10.3□□□□□ -0.76
VPS4B-201ENST00000238497 VPS37CA5D8V6 355 aaPredicted RBP10.3□□□□□ -0.76
VPS4B-201ENST00000238497 LBX1P52954 281 aa10.3□□□□□ -0.76
VPS4B-201ENST00000238497 CACNB3P54284 484 aa10.3□□□□□ -0.76
VPS4B-201ENST00000238497 NMIQ13287 307 aaPredicted RBP10.3□□□□□ -0.76
VPS4B-201ENST00000238497 POLA2Q14181 598 aa10.3□□□□□ -0.76
VPS4B-201ENST00000238497 RGMBQ6NW40 437 aa10.3□□□□□ -0.76
VPS4B-201ENST00000238497 C15orf52Q6ZUT6 534 aaKnown RBP10.3□□□□□ -0.76
VPS4B-201ENST00000238497 ATG9AQ7Z3C6 839 aa10.3□□□□□ -0.76
VPS4B-201ENST00000238497 ERC1Q8IUD2 1116 aa10.3□□□□□ -0.76
VPS4B-201ENST00000238497 APOBEC3FQ8IUX4 373 aaKnown RBP10.3□□□□□ -0.76
VPS4B-201ENST00000238497 CCDC83Q8IWF9 413 aa10.3□□□□□ -0.76
VPS4B-201ENST00000238497 ZKSCAN1P17029 563 aaPredicted RBP10.29□□□□□ -0.76
VPS4B-201ENST00000238497 ADORA1P30542 326 aa10.29□□□□□ -0.76
VPS4B-201ENST00000238497 FBXO33Q7Z6M2 555 aa10.29□□□□□ -0.76
VPS4B-201ENST00000238497 SEC62Q99442 399 aaKnown RBP10.29□□□□□ -0.76
VPS4B-201ENST00000238497 OSBPL3Q9H4L5 887 aa10.29□□□□□ -0.76
VPS4B-201ENST00000238497 TMOD2Q9NZR1 351 aa10.29□□□□□ -0.76
VPS4B-201ENST00000238497 GOLIM4O00461 696 aa10.29□□□□□ -0.76
VPS4B-201ENST00000238497 PHKA1P46020 1223 aa10.29□□□□□ -0.76
VPS4B-201ENST00000238497 RAB3GAP1Q15042 981 aa10.29□□□□□ -0.76
VPS4B-201ENST00000238497 GRIK5Q16478 980 aa10.29□□□□□ -0.76
VPS4B-201ENST00000238497 STK11IPQ8N1F8 1099 aa10.29□□□□□ -0.76
VPS4B-201ENST00000238497 TBC1D22AQ8WUA7 517 aa10.29□□□□□ -0.76
VPS4B-201ENST00000238497 ZIC5Q96T25 663 aa10.29□□□□□ -0.76
VPS4B-201ENST00000238497 CRKP46108 304 aa10.28□□□□□ -0.76
VPS4B-201ENST00000238497 NUCB2P80303 420 aa10.28□□□□□ -0.76
VPS4B-201ENST00000238497 FERMT3Q86UX7 667 aa10.28□□□□□ -0.76
VPS4B-201ENST00000238497 RNF214Q8ND24 703 aa10.28□□□□□ -0.76
VPS4B-201ENST00000238497 SPDYE2BA6NHP3 402 aa10.28□□□□□ -0.76
VPS4B-201ENST00000238497 SPDYE6P0CI01 402 aa10.28□□□□□ -0.76
VPS4B-201ENST00000238497 CTCFP49711 727 aaPredicted RBP10.28□□□□□ -0.76
VPS4B-201ENST00000238497 NOGQ13253 232 aa10.28□□□□□ -0.76
VPS4B-201ENST00000238497 ADCK5Q3MIX3 580 aa10.28□□□□□ -0.76
VPS4B-201ENST00000238497 VGLL2Q8N8G2 317 aa10.28□□□□□ -0.76
VPS4B-201ENST00000238497 TEKT1Q969V4 418 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms