RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 H0YL77 283 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 CCL8P80075 99 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 NPIPB3Q92617 1050 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 ALKBH3Q96Q83 286 aaPredicted RBP2.35□□□□□ -2.03
SCN1A-219ENST00000641575 LINC00474Q9P2X8 69 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 A0A087WUJ7 227 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 A0A087WWC5 75 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 SHISA8B8ZZ34 492 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 UBE2CO00762 179 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 NCR2O95944 276 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 FUSP35637 526 aaKnown RBP eCLIP2.35□□□□□ -2.03
SCN1A-219ENST00000641575 CTRLP40313 264 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 Q0VG73 95 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 KLHDC9Q8NEP7 349 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 GATAD1Q8WUU5 269 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 CACNG8Q8WXS5 425 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 MRGPRFQ96AM1 343 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 MRPS18CQ9Y3D5 142 aaKnown RBP2.35□□□□□ -2.03
SCN1A-219ENST00000641575 A0A1W2PR80 420 aa2.34□□□□□ -2.03
SCN1A-219ENST00000641575 TMEM238C9JI98 176 aa2.34□□□□□ -2.03
SCN1A-219ENST00000641575 CDIPTO14735 213 aa2.34□□□□□ -2.03
SCN1A-219ENST00000641575 DLEU1O43261 78 aa2.34□□□□□ -2.03
SCN1A-219ENST00000641575 EGR2P11161 476 aaPredicted RBP2.34□□□□□ -2.03
SCN1A-219ENST00000641575 CXCL2P19875 107 aa2.34□□□□□ -2.03
SCN1A-219ENST00000641575 HILS1P60008 231 aa2.34□□□□□ -2.03
SCN1A-219ENST00000641575 MDS2Q8NDY4 140 aa2.34□□□□□ -2.03
SCN1A-219ENST00000641575 KLHL30-AS1Q8NEE0 82 aa2.34□□□□□ -2.03
SCN1A-219ENST00000641575 RPP21Q9H633 154 aaKnown RBP2.34□□□□□ -2.03
SCN1A-219ENST00000641575 CACNG4Q9UBN1 327 aa2.34□□□□□ -2.03
SCN1A-219ENST00000641575 PAPPA2Q9BXP8 1791 aa2.34□□□□□ -2.03
SCN1A-219ENST00000641575 TRBV25-1A0A075B6N4 114 aa2.34□□□□□ -2.03
SCN1A-219ENST00000641575 TRAV40A0A0B4J280 105 aa2.34□□□□□ -2.03
SCN1A-219ENST00000641575 A0A1W2PPI3 338 aa2.34□□□□□ -2.03
SCN1A-219ENST00000641575 VENTXO95231 258 aa2.34□□□□□ -2.03
SCN1A-219ENST00000641575 FGF9P31371 208 aaPredicted RBP2.34□□□□□ -2.03
SCN1A-219ENST00000641575 RHOGP84095 191 aa2.34□□□□□ -2.03
SCN1A-219ENST00000641575 INSL4Q14641 139 aa2.34□□□□□ -2.03
SCN1A-219ENST00000641575 FXYD3Q14802 87 aa2.34□□□□□ -2.03
SCN1A-219ENST00000641575 KIR3DS1Q14943 382 aa2.34□□□□□ -2.03
SCN1A-219ENST00000641575 DNAJC25-GNG10A0A024R161 153 aa2.34□□□□□ -2.03
SCN1A-219ENST00000641575 A0A0J9YW62 118 aa2.34□□□□□ -2.03
SCN1A-219ENST00000641575 SPAARA0A1B0GVQ0 90 aa2.34□□□□□ -2.03
SCN1A-219ENST00000641575 APOHP02749 345 aaPredicted RBP2.34□□□□□ -2.03
SCN1A-219ENST00000641575 SAA1P0DJI8 122 aaPredicted RBP2.34□□□□□ -2.03
SCN1A-219ENST00000641575 MPV17P39210 176 aa2.34□□□□□ -2.03
SCN1A-219ENST00000641575 RPS11P62280 158 aaKnown RBP eCLIP2.34□□□□□ -2.03
SCN1A-219ENST00000641575 ZNF117Q03924 483 aa2.34□□□□□ -2.03
SCN1A-219ENST00000641575 C9orf47Q6ZRZ4 202 aa2.34□□□□□ -2.03
SCN1A-219ENST00000641575 RIMKLAQ8IXN7 391 aa2.34□□□□□ -2.03
SCN1A-219ENST00000641575 SMIM20Q8N5G0 67 aa2.34□□□□□ -2.03
SCN1A-219ENST00000641575 PILRBQ9UKJ0 227 aa2.34□□□□□ -2.03
SCN1A-219ENST00000641575 SRRM2Q9UQ35 2752 aaKnown RBP2.34□□□□□ -2.03
SCN1A-219ENST00000641575 LY75O60449 1722 aa2.34□□□□□ -2.03
SCN1A-219ENST00000641575 IGHG4P01861 327 aa2.34□□□□□ -2.03
SCN1A-219ENST00000641575 IFI6P09912 130 aa2.34□□□□□ -2.03
SCN1A-219ENST00000641575 TBR1Q16650 682 aa2.34□□□□□ -2.03
SCN1A-219ENST00000641575 C1QL3Q5VWW1 255 aa2.34□□□□□ -2.03
SCN1A-219ENST00000641575 OR11H4Q8NGC9 324 aa2.34□□□□□ -2.03
SCN1A-219ENST00000641575 RASL10BQ96S79 203 aa2.34□□□□□ -2.03
SCN1A-219ENST00000641575 IL17CQ9P0M4 197 aa2.34□□□□□ -2.03
SCN1A-219ENST00000641575 IGHV1OR21-1A0A087WYE8 117 aa2.34□□□□□ -2.03
SCN1A-219ENST00000641575 IGHV5-10-1A0A0J9YXX1 117 aa2.34□□□□□ -2.03
SCN1A-219ENST00000641575 G3V4G9 280 aa2.34□□□□□ -2.03
SCN1A-219ENST00000641575 PDCD6O75340 191 aa2.34□□□□□ -2.03
SCN1A-219ENST00000641575 C5orf24Q7Z6I8 188 aa2.34□□□□□ -2.03
SCN1A-219ENST00000641575 C18orf15Q96N68 181 aa2.34□□□□□ -2.03
SCN1A-219ENST00000641575 INSM2Q96T92 566 aaPredicted RBP2.34□□□□□ -2.03
SCN1A-219ENST00000641575 KLHDC3Q9BQ90 382 aa2.34□□□□□ -2.03
SCN1A-219ENST00000641575 NAA38Q9BRA0 125 aaKnown RBP2.34□□□□□ -2.03
SCN1A-219ENST00000641575 SIGLEC1Q9BZZ2 1709 aa2.34□□□□□ -2.03
SCN1A-219ENST00000641575 FAM90A26D6RGX4 464 aa2.34□□□□□ -2.03
SCN1A-219ENST00000641575 UMODP07911 640 aa2.34□□□□□ -2.03
SCN1A-219ENST00000641575 PAQR9Q6ZVX9 377 aa2.34□□□□□ -2.03
SCN1A-219ENST00000641575 RCHY1Q96PM5 261 aa2.34□□□□□ -2.03
SCN1A-219ENST00000641575 ZNF706Q9Y5V0 76 aaPredicted RBP2.34□□□□□ -2.03
SCN1A-219ENST00000641575 FAM90A10PA6NDY2 464 aa2.34□□□□□ -2.04
SCN1A-219ENST00000641575 FAM90A18PA6NE21 464 aa2.34□□□□□ -2.04
SCN1A-219ENST00000641575 FAM90A16PA6NEW6 464 aa2.34□□□□□ -2.04
SCN1A-219ENST00000641575 FAM90A20PA6NIJ5 464 aa2.34□□□□□ -2.04
SCN1A-219ENST00000641575 FAM90A8PA6NJQ4 464 aa2.34□□□□□ -2.04
SCN1A-219ENST00000641575 FAM90A7PA6NKC0 464 aa2.34□□□□□ -2.04
SCN1A-219ENST00000641575 FAM90A22PA8MWA6 464 aa2.34□□□□□ -2.04
SCN1A-219ENST00000641575 FAM90A12PA8MX19 464 aa2.34□□□□□ -2.04
SCN1A-219ENST00000641575 FAM90A5PA8MXJ8 464 aa2.34□□□□□ -2.04
SCN1A-219ENST00000641575 FAM90A23PA8MXZ1 464 aa2.34□□□□□ -2.04
SCN1A-219ENST00000641575 PEX7O00628 323 aa2.34□□□□□ -2.04
SCN1A-219ENST00000641575 FAM90A15PP0C7V4 464 aa2.34□□□□□ -2.04
SCN1A-219ENST00000641575 FAM90A13PP0C7W8 464 aa2.34□□□□□ -2.04
SCN1A-219ENST00000641575 FAM90A14PP0C7W9 464 aa2.34□□□□□ -2.04
SCN1A-219ENST00000641575 FAM90A24PP0C7X0 464 aa2.34□□□□□ -2.04
SCN1A-219ENST00000641575 EWSR1Q01844 656 aaKnown RBP eCLIP2.34□□□□□ -2.04
SCN1A-219ENST00000641575 KISS1Q15726 138 aa2.34□□□□□ -2.04
SCN1A-219ENST00000641575 VWC2Q2TAL6 325 aa2.34□□□□□ -2.04
SCN1A-219ENST00000641575 Q96MF0 132 aa2.34□□□□□ -2.04
SCN1A-219ENST00000641575 IMMP2LQ96T52 175 aa2.34□□□□□ -2.04
SCN1A-219ENST00000641575 NABP2Q9BQ15 211 aa2.34□□□□□ -2.04
SCN1A-219ENST00000641575 SERP1Q9Y6X1 66 aa2.34□□□□□ -2.04
SCN1A-219ENST00000641575 TRBV5-4A0A0C4DH59 114 aa2.34□□□□□ -2.04
SCN1A-219ENST00000641575 IZUMO1RA6ND01 250 aa2.34□□□□□ -2.04
SCN1A-219ENST00000641575 HMGN4O00479 90 aa2.34□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms