RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 Q5BKY6 102 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 CDKL4Q5MAI5 379 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 FAM74A1Q5RGS3 127 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 C1orf134Q5TEV5 83 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 FAM151BQ6UXP7 276 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 PATE2Q6UY27 113 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 PLEKHG7Q6ZR37 379 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 SLC51BQ86UW2 128 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 PDZD9Q8IXQ8 264 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 C20orf196Q8IYI0 205 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 ANKRD29Q8N6D5 301 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 LINC00301Q8NCQ3 95 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 ST6GALNAC3Q8NDV1 305 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 OR51D1Q8NGF3 324 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 OR10K1Q8NGX5 313 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 DNAJC9Q8WXX5 260 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 PTH2Q96A98 100 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 OPTNQ96CV9 577 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 SLAMF6Q96DU3 332 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 RMND5BQ96G75 393 aaPredicted RBP-0.21□□□□□ -2.44
VPS35-212ENST00000640313 C2orf50Q96LR7 162 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 TP53RKQ96S44 253 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 GPER1Q99527 375 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 CCL19Q99731 98 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 C7orf50Q9BRJ6 194 aaKnown RBP-0.21□□□□□ -2.44
VPS35-212ENST00000640313 PRADC1Q9BSG0 188 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 UPF3BQ9BZI7 483 aaKnown RBP-0.21□□□□□ -2.44
VPS35-212ENST00000640313 RNASE7Q9H1E1 156 aaKnown RBP-0.21□□□□□ -2.44
VPS35-212ENST00000640313 WFDC10AQ9H1F0 79 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 FAM96AQ9H5X1 160 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 RNF122Q9H9V4 155 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 UCK1Q9HA47 277 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 PROK2Q9HC23 129 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 C14orf132Q9NPU4 83 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 PRTFDC1Q9NRG1 225 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 IDI2-AS1Q9NZ38 188 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 TNFSF18Q9UNG2 199 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 CYSLTR1Q9Y271 337 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 TMEM56-RWDD3S4R434 201 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 U3KQA8 63 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 EVC2Q86UK5 1308 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 PHRF1Q9P1Y6 1649 aaKnown RBP-0.21□□□□□ -2.44
VPS35-212ENST00000640313 C9orf84Q5VXU9 1444 aa-0.21□□□□□ -2.44
VPS35-212ENST00000640313 ANK3Q12955 4377 aaKnown RBP-0.22□□□□□ -2.44
VPS35-212ENST00000640313 MYO7AQ13402 2215 aa-0.22□□□□□ -2.44
VPS35-212ENST00000640313 MED1Q15648 1581 aaPredicted RBP-0.22□□□□□ -2.44
VPS35-212ENST00000640313 AHCTF1Q8WYP5 2266 aa-0.22□□□□□ -2.44
VPS35-212ENST00000640313 HECW2Q9P2P5 1572 aa-0.22□□□□□ -2.44
VPS35-212ENST00000640313 NBEAL1Q6ZS30 2694 aa-0.22□□□□□ -2.44
VPS35-212ENST00000640313 AKAP6Q13023 2319 aa-0.22□□□□□ -2.44
VPS35-212ENST00000640313 PTPRQQ9UMZ3 2332 aa-0.22□□□□□ -2.44
VPS35-212ENST00000640313 A0A0A6YYH2 397 aa-0.22□□□□□ -2.44
VPS35-212ENST00000640313 A6NJ64 397 aa-0.22□□□□□ -2.44
VPS35-212ENST00000640313 LRRN3E7EW58 273 aa-0.22□□□□□ -2.44
VPS35-212ENST00000640313 F8W1H4 67 aa-0.22□□□□□ -2.44
VPS35-212ENST00000640313 JMJD7-PLA2G4BH0Y9G9 81 aa-0.22□□□□□ -2.44
VPS35-212ENST00000640313 H3BRM9 83 aa-0.22□□□□□ -2.44
VPS35-212ENST00000640313 M0QX08 132 aa-0.22□□□□□ -2.44
VPS35-212ENST00000640313 KPNA3O00505 521 aaPredicted RBP-0.22□□□□□ -2.44
VPS35-212ENST00000640313 SLC16A4O15374 487 aa-0.22□□□□□ -2.44
VPS35-212ENST00000640313 CHP2O43745 196 aa-0.22□□□□□ -2.44
VPS35-212ENST00000640313 TIMM17BO60830 172 aa-0.22□□□□□ -2.44
VPS35-212ENST00000640313 DCTN3O75935 186 aa-0.22□□□□□ -2.44
VPS35-212ENST00000640313 ERC2-IT1O76042 136 aa-0.22□□□□□ -2.44
VPS35-212ENST00000640313 LY6G6CO95867 125 aa-0.22□□□□□ -2.44
VPS35-212ENST00000640313 IGHV3-33P01772 117 aa-0.22□□□□□ -2.44
VPS35-212ENST00000640313 TTRP02766 147 aa-0.22□□□□□ -2.44
VPS35-212ENST00000640313 CD2P06729 351 aa-0.22□□□□□ -2.44
VPS35-212ENST00000640313 SERPINA6P08185 405 aa-0.22□□□□□ -2.44
VPS35-212ENST00000640313 HIST1H1EP10412 219 aaKnown RBP-0.22□□□□□ -2.44
VPS35-212ENST00000640313 CD79AP11912 226 aa-0.22□□□□□ -2.44
VPS35-212ENST00000640313 COX7CP15954 63 aa-0.22□□□□□ -2.44
VPS35-212ENST00000640313 YPEL3P61236 119 aaPredicted RBP-0.22□□□□□ -2.44
VPS35-212ENST00000640313 PSME3P61289 254 aa-0.22□□□□□ -2.44
VPS35-212ENST00000640313 QRFPP83859 136 aa-0.22□□□□□ -2.44
VPS35-212ENST00000640313 HIST3H3Q16695 136 aa-0.22□□□□□ -2.44
VPS35-212ENST00000640313 RRN3P1Q2M238 152 aa-0.22□□□□□ -2.44
VPS35-212ENST00000640313 IAH1Q2TAA2 248 aaPredicted RBP-0.22□□□□□ -2.44
VPS35-212ENST00000640313 SPATA45Q537H7 98 aa-0.22□□□□□ -2.44
VPS35-212ENST00000640313 HIST2H3PS2Q5TEC6 136 aa-0.22□□□□□ -2.44
VPS35-212ENST00000640313 Q6Q795 121 aa-0.22□□□□□ -2.44
VPS35-212ENST00000640313 TRAPPC6BQ86SZ2 158 aa-0.22□□□□□ -2.44
VPS35-212ENST00000640313 ANGPTL5Q86XS5 388 aa-0.22□□□□□ -2.44
VPS35-212ENST00000640313 GDPD1Q8N9F7 314 aa-0.22□□□□□ -2.44
VPS35-212ENST00000640313 SLC30A7Q8NEW0 376 aa-0.22□□□□□ -2.44
VPS35-212ENST00000640313 OR52L1Q8NGH7 329 aa-0.22□□□□□ -2.44
VPS35-212ENST00000640313 OR2T10Q8NGZ9 312 aa-0.22□□□□□ -2.44
VPS35-212ENST00000640313 OR10AG1Q8NH19 301 aa-0.22□□□□□ -2.44
VPS35-212ENST00000640313 TMEM254Q8TBM7 123 aa-0.22□□□□□ -2.44
VPS35-212ENST00000640313 ATP6V1G3Q96LB4 118 aa-0.22□□□□□ -2.44
VPS35-212ENST00000640313 OR52E6Q96RD3 313 aa-0.22□□□□□ -2.44
VPS35-212ENST00000640313 HIST1H2BLQ99880 126 aa-0.22□□□□□ -2.44
VPS35-212ENST00000640313 KIFC1Q9BW19 673 aa-0.22□□□□□ -2.44
VPS35-212ENST00000640313 PARD6GQ9BYG4 376 aaPredicted RBP-0.22□□□□□ -2.44
VPS35-212ENST00000640313 C6orf62Q9GZU0 229 aaPredicted RBP-0.22□□□□□ -2.44
VPS35-212ENST00000640313 CHMP4BQ9H444 224 aaKnown RBP-0.22□□□□□ -2.44
VPS35-212ENST00000640313 TMEM138Q9NPI0 162 aa-0.22□□□□□ -2.44
VPS35-212ENST00000640313 UQCC1Q9NVA1 299 aa-0.22□□□□□ -2.44
VPS35-212ENST00000640313 FGFR1OP2Q9NVK5 253 aa-0.22□□□□□ -2.44
VPS35-212ENST00000640313 MED29Q9NX70 200 aa-0.22□□□□□ -2.44
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms