RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 SPINK13Q1W4C9 94 aa10.56□□□□□ -0.72
SYNE2-228ENST00000639659 STEAP1BQ6NZ63 245 aa10.56□□□□□ -0.72
SYNE2-228ENST00000639659 MZT2AQ6P582 158 aa10.56□□□□□ -0.72
SYNE2-228ENST00000639659 SPATA12Q7Z6I5 190 aa10.56□□□□□ -0.72
SYNE2-228ENST00000639659 LGI3Q8N145 548 aa10.56□□□□□ -0.72
SYNE2-228ENST00000639659 ZNRF2Q8NHG8 242 aa10.56□□□□□ -0.72
SYNE2-228ENST00000639659 DTD1Q8TEA8 209 aa10.56□□□□□ -0.72
SYNE2-228ENST00000639659 ABHD1Q96SE0 405 aa10.56□□□□□ -0.72
SYNE2-228ENST00000639659 LRP1BQ9NZR2 4599 aa10.56□□□□□ -0.72
SYNE2-228ENST00000639659 GABARAPH6UMI1 98 aa10.55□□□□□ -0.72
SYNE2-228ENST00000639659 GABARAPO95166 117 aa10.55□□□□□ -0.72
SYNE2-228ENST00000639659 INSP01308 110 aa10.55□□□□□ -0.72
SYNE2-228ENST00000639659 FABP1P07148 127 aa10.55□□□□□ -0.72
SYNE2-228ENST00000639659 PAX9P55771 341 aa10.55□□□□□ -0.72
SYNE2-228ENST00000639659 CCL18P55774 89 aa10.55□□□□□ -0.72
SYNE2-228ENST00000639659 CLINT1Q14677 625 aa10.55□□□□□ -0.72
SYNE2-228ENST00000639659 FCN2Q15485 313 aa10.55□□□□□ -0.72
SYNE2-228ENST00000639659 GPR107Q5VW38 600 aa10.55□□□□□ -0.72
SYNE2-228ENST00000639659 Q8N1X5 172 aa10.55□□□□□ -0.72
SYNE2-228ENST00000639659 TMEM229BQ8NBD8 167 aa10.55□□□□□ -0.72
SYNE2-228ENST00000639659 IGF2BP2-AS1Q96M15 143 aa10.55□□□□□ -0.72
SYNE2-228ENST00000639659 CLUHP3Q96NS8 147 aa10.55□□□□□ -0.72
SYNE2-228ENST00000639659 RTBDNQ9BSG5 229 aaPredicted RBP10.55□□□□□ -0.72
SYNE2-228ENST00000639659 RBKSQ9H477 322 aa10.55□□□□□ -0.72
SYNE2-228ENST00000639659 FGL1Q08830 312 aa10.54□□□□□ -0.72
SYNE2-228ENST00000639659 GAMTQ14353 236 aa10.54□□□□□ -0.72
SYNE2-228ENST00000639659 C1orf194Q5T5A4 169 aa10.54□□□□□ -0.72
SYNE2-228ENST00000639659 BAP18Q8IXM2 172 aa10.54□□□□□ -0.72
SYNE2-228ENST00000639659 OR4C16Q8NGL9 310 aa10.54□□□□□ -0.72
SYNE2-228ENST00000639659 FUNDC2Q9BWH2 189 aa10.54□□□□□ -0.72
SYNE2-228ENST00000639659 U3KQ87 197 aa10.54□□□□□ -0.72
SYNE2-228ENST00000639659 IGKV1D-37A0A075B6S9 117 aa10.53□□□□□ -0.72
SYNE2-228ENST00000639659 A0A087WXM4 84 aa10.53□□□□□ -0.72
SYNE2-228ENST00000639659 CRYM-AS1A6NIL9 109 aa10.53□□□□□ -0.72
SYNE2-228ENST00000639659 LYRM9A8MSI8 78 aa10.53□□□□□ -0.72
SYNE2-228ENST00000639659 SNRPGP15A8MWD9 76 aa10.53□□□□□ -0.72
SYNE2-228ENST00000639659 DISC1C4P0D8 188 aa10.53□□□□□ -0.72
SYNE2-228ENST00000639659 HTN1P15515 57 aa10.53□□□□□ -0.72
SYNE2-228ENST00000639659 GALR1P47211 349 aa10.53□□□□□ -0.72
SYNE2-228ENST00000639659 IGFL4Q6B9Z1 124 aa10.53□□□□□ -0.72
SYNE2-228ENST00000639659 RSG1Q9BU20 258 aa10.53□□□□□ -0.72
SYNE2-228ENST00000639659 SLC25A32Q9H2D1 315 aa10.53□□□□□ -0.72
SYNE2-228ENST00000639659 LINC00588Q9Y4M8 146 aa10.53□□□□□ -0.72
SYNE2-228ENST00000639659 TRAV12-2A0A075B6T6 113 aa10.52□□□□□ -0.73
SYNE2-228ENST00000639659 ATP5G1P05496 136 aa10.52□□□□□ -0.73
SYNE2-228ENST00000639659 ATP5G3P48201 142 aa10.52□□□□□ -0.73
SYNE2-228ENST00000639659 ALDH3B2P48448 385 aa10.52□□□□□ -0.73
SYNE2-228ENST00000639659 MEOX2P50222 304 aa10.52□□□□□ -0.73
SYNE2-228ENST00000639659 CNN1P51911 297 aaKnown RBP10.52□□□□□ -0.73
SYNE2-228ENST00000639659 DLK1P80370 383 aa10.52□□□□□ -0.73
SYNE2-228ENST00000639659 OR1S1Q8NH92 325 aa10.52□□□□□ -0.73
SYNE2-228ENST00000639659 AP3S1Q92572 193 aa10.52□□□□□ -0.73
SYNE2-228ENST00000639659 PRB4P10163 310 aaPredicted RBP10.51□□□□□ -0.73
SYNE2-228ENST00000639659 IAPPP10997 89 aa10.51□□□□□ -0.73
SYNE2-228ENST00000639659 ZNF182P17025 639 aaPredicted RBP10.51□□□□□ -0.73
SYNE2-228ENST00000639659 SMCO1Q147U7 214 aa10.51□□□□□ -0.73
SYNE2-228ENST00000639659 SAMD13Q5VXD3 122 aa10.51□□□□□ -0.73
SYNE2-228ENST00000639659 AMTNQ6UX39 209 aa10.51□□□□□ -0.73
SYNE2-228ENST00000639659 SSX7Q7RTT5 188 aa10.51□□□□□ -0.73
SYNE2-228ENST00000639659 RNF182Q8N6D2 247 aa10.51□□□□□ -0.73
SYNE2-228ENST00000639659 OR11H7Q8NGC8 314 aa10.51□□□□□ -0.73
SYNE2-228ENST00000639659 RNF141Q8WVD5 230 aa10.51□□□□□ -0.73
SYNE2-228ENST00000639659 SLC25A39Q9BZJ4 359 aaPredicted RBP10.51□□□□□ -0.73
SYNE2-228ENST00000639659 APOBP04114 4563 aaKnown RBP10.5□□□□□ -0.73
SYNE2-228ENST00000639659 DUSP14O95147 198 aaKnown RBP10.5□□□□□ -0.73
SYNE2-228ENST00000639659 ORM2P19652 201 aa10.5□□□□□ -0.73
SYNE2-228ENST00000639659 AZU1P20160 251 aa10.5□□□□□ -0.73
SYNE2-228ENST00000639659 GPX4P36969 197 aaPredicted RBP10.5□□□□□ -0.73
SYNE2-228ENST00000639659 CCR6P51684 374 aa10.5□□□□□ -0.73
SYNE2-228ENST00000639659 ZNF738Q8NE65 137 aa10.5□□□□□ -0.73
SYNE2-228ENST00000639659 UHRF2Q96PU4 802 aa10.5□□□□□ -0.73
SYNE2-228ENST00000639659 LINC01587Q99440 93 aa10.5□□□□□ -0.73
SYNE2-228ENST00000639659 PPP1R14DQ9NXH3 145 aa10.5□□□□□ -0.73
SYNE2-228ENST00000639659 HSPB7Q9UBY9 170 aa10.5□□□□□ -0.73
SYNE2-228ENST00000639659 CACFD1Q9UGQ2 172 aa10.5□□□□□ -0.73
SYNE2-228ENST00000639659 KCNIP3Q9Y2W7 256 aa10.5□□□□□ -0.73
SYNE2-228ENST00000639659 TMEM56-RWDD3S4R434 201 aa10.5□□□□□ -0.73
SYNE2-228ENST00000639659 RGS5O15539 181 aa10.49□□□□□ -0.73
SYNE2-228ENST00000639659 CRXO43186 299 aaPredicted RBP10.49□□□□□ -0.73
SYNE2-228ENST00000639659 RAB11AP62491 216 aa10.49□□□□□ -0.73
SYNE2-228ENST00000639659 RHOBP62745 196 aa10.49□□□□□ -0.73
SYNE2-228ENST00000639659 SURF2Q15527 256 aaPredicted RBP10.49□□□□□ -0.73
SYNE2-228ENST00000639659 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa10.49□□□□□ -0.73
SYNE2-228ENST00000639659 LYZL2Q7Z4W2 148 aa10.49□□□□□ -0.73
SYNE2-228ENST00000639659 C15orf40Q8WUR7 153 aa10.49□□□□□ -0.73
SYNE2-228ENST00000639659 IL22RA2Q969J5 263 aa10.49□□□□□ -0.73
SYNE2-228ENST00000639659 TRGV9Q99603 122 aa10.49□□□□□ -0.73
SYNE2-228ENST00000639659 GPR132Q9UNW8 380 aa10.49□□□□□ -0.73
SYNE2-228ENST00000639659 ZNF98A6NK75 572 aa10.48□□□□□ -0.73
SYNE2-228ENST00000639659 BOLA2-SMG1P6H3BVE0 249 aa10.48□□□□□ -0.73
SYNE2-228ENST00000639659 AKAIN1P0CW23 69 aa10.48□□□□□ -0.73
SYNE2-228ENST00000639659 AKR1C4P17516 323 aa10.48□□□□□ -0.73
SYNE2-228ENST00000639659 GATA2P23769 480 aaPredicted RBP10.48□□□□□ -0.73
SYNE2-228ENST00000639659 KRTAP10-2P60368 255 aa10.48□□□□□ -0.73
SYNE2-228ENST00000639659 HIST1H1AQ02539 215 aaPredicted RBP10.48□□□□□ -0.73
SYNE2-228ENST00000639659 OR5I1Q13606 314 aa10.48□□□□□ -0.73
SYNE2-228ENST00000639659 GPR141Q7Z602 305 aa10.48□□□□□ -0.73
SYNE2-228ENST00000639659 CLVS1Q8IUQ0 354 aaPredicted RBP10.48□□□□□ -0.73
SYNE2-228ENST00000639659 OR51S1Q8NGJ8 323 aa10.48□□□□□ -0.73
SYNE2-228ENST00000639659 OR1B1Q8NGR6 318 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms