RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 TRAV5A0A0B4J249 113 aa14.5□□□□□ -0.09
CLN3-263ENST00000637871 A0A1W2PPQ1 181 aa14.5□□□□□ -0.09
CLN3-263ENST00000637871 K7EIM0 57 aa14.5□□□□□ -0.09
CLN3-263ENST00000637871 GCGP01275 180 aa14.5□□□□□ -0.09
CLN3-263ENST00000637871 RD3LP0DJH9 198 aa14.5□□□□□ -0.09
CLN3-263ENST00000637871 NDUFA6P56556 154 aa14.5□□□□□ -0.09
CLN3-263ENST00000637871 YPEL3P61236 119 aaPredicted RBP14.5□□□□□ -0.09
CLN3-263ENST00000637871 NECAP1Q8NC96 275 aa14.5□□□□□ -0.09
CLN3-263ENST00000637871 ELOVL1Q9BW60 279 aa14.5□□□□□ -0.09
CLN3-263ENST00000637871 IL36BQ9NZH7 164 aa14.5□□□□□ -0.09
CLN3-263ENST00000637871 PITPNC1Q9UKF7 332 aa14.5□□□□□ -0.09
CLN3-263ENST00000637871 NCBP2LA6PVI3 153 aaKnown RBP14.49□□□□□ -0.09
CLN3-263ENST00000637871 ISLRO14498 428 aa14.49□□□□□ -0.09
CLN3-263ENST00000637871 PHOX2AO14813 284 aa14.49□□□□□ -0.09
CLN3-263ENST00000637871 IGHV3-48P01763 117 aa14.49□□□□□ -0.09
CLN3-263ENST00000637871 HLA-DRB1P01911 266 aa14.49□□□□□ -0.09
CLN3-263ENST00000637871 TRGC1P0CF51 173 aa14.49□□□□□ -0.09
CLN3-263ENST00000637871 MEOX2P50222 304 aa14.49□□□□□ -0.09
CLN3-263ENST00000637871 MFAP4P55083 255 aa14.49□□□□□ -0.09
CLN3-263ENST00000637871 KLK9Q2XQG4 91 aa14.49□□□□□ -0.09
CLN3-263ENST00000637871 COX19Q49B96 90 aa14.49□□□□□ -0.09
CLN3-263ENST00000637871 CENPWQ5EE01 88 aa14.49□□□□□ -0.09
CLN3-263ENST00000637871 MORN5Q5VZ52 161 aa14.49□□□□□ -0.09
CLN3-263ENST00000637871 SGMS2Q8NHU3 365 aa14.49□□□□□ -0.09
CLN3-263ENST00000637871 TXN2Q99757 166 aa14.49□□□□□ -0.09
CLN3-263ENST00000637871 CHRDL1Q9BU40 450 aa14.49□□□□□ -0.09
CLN3-263ENST00000637871 KLK9Q9UKQ9 250 aa14.49□□□□□ -0.09
CLN3-263ENST00000637871 ZNF98A6NK75 572 aa14.48□□□□□ -0.09
CLN3-263ENST00000637871 TOMM40O96008 361 aa14.48□□□□□ -0.09
CLN3-263ENST00000637871 TGFAP01135 160 aa14.48□□□□□ -0.09
CLN3-263ENST00000637871 MSMBP08118 114 aa14.48□□□□□ -0.09
CLN3-263ENST00000637871 NBEAP1P0C6P0 100 aa14.48□□□□□ -0.09
CLN3-263ENST00000637871 PSG1P11464 419 aa14.48□□□□□ -0.09
CLN3-263ENST00000637871 MYCNOSP40205 109 aa14.48□□□□□ -0.09
CLN3-263ENST00000637871 PAX8Q06710 450 aa14.48□□□□□ -0.09
CLN3-263ENST00000637871 Q71RC1 249 aaPredicted RBP14.48□□□□□ -0.09
CLN3-263ENST00000637871 LINC01356Q8N9X3 169 aa14.48□□□□□ -0.09
CLN3-263ENST00000637871 FRZBQ92765 325 aa14.48□□□□□ -0.09
CLN3-263ENST00000637871 RBM14Q96PK6 669 aaKnown RBP14.48□□□□□ -0.09
CLN3-263ENST00000637871 GSX1Q9H4S2 264 aaPredicted RBP14.48□□□□□ -0.09
CLN3-263ENST00000637871 MRPL27Q9P0M9 148 aaKnown RBP14.48□□□□□ -0.09
CLN3-263ENST00000637871 IGLV11-55A0A075B6I3 123 aa14.48□□□□□ -0.09
CLN3-263ENST00000637871 ZNF329Q86UD4 541 aa14.48□□□□□ -0.09
CLN3-263ENST00000637871 WNK2Q9Y3S1 2297 aa14.47□□□□□ -0.09
CLN3-263ENST00000637871 A0A1W2PRD5 423 aa14.47□□□□□ -0.09
CLN3-263ENST00000637871 A0A1W2PRF3 423 aa14.47□□□□□ -0.09
CLN3-263ENST00000637871 A0A1W2PRM7 423 aa14.47□□□□□ -0.09
CLN3-263ENST00000637871 B4DSR2 109 aa14.47□□□□□ -0.09
CLN3-263ENST00000637871 PEX7O00628 323 aa14.47□□□□□ -0.09
CLN3-263ENST00000637871 NPFFO15130 113 aa14.47□□□□□ -0.09
CLN3-263ENST00000637871 APELAP0DMC3 54 aa14.47□□□□□ -0.09
CLN3-263ENST00000637871 FCGR2BP31994 310 aaPredicted RBP14.47□□□□□ -0.09
CLN3-263ENST00000637871 ERVFC1-1P60608 527 aa14.47□□□□□ -0.09
CLN3-263ENST00000637871 CYB5R2Q6BCY4 276 aa14.47□□□□□ -0.09
CLN3-263ENST00000637871 DYNAPQ8N1N2 210 aa14.47□□□□□ -0.09
CLN3-263ENST00000637871 HIF1ANQ9NWT6 349 aa14.47□□□□□ -0.09
CLN3-263ENST00000637871 A0A0U1RQK1 487 aa14.46□□□□□ -0.09
CLN3-263ENST00000637871 ZNF320A2RRD8 509 aa14.46□□□□□ -0.09
CLN3-263ENST00000637871 K7EN84 100 aa14.46□□□□□ -0.09
CLN3-263ENST00000637871 LY6G6DO95868 133 aa14.46□□□□□ -0.09
CLN3-263ENST00000637871 IGKV1-17P01599 117 aa14.46□□□□□ -0.09
CLN3-263ENST00000637871 PYYP10082 97 aa14.46□□□□□ -0.09
CLN3-263ENST00000637871 HIST1H1EP10412 219 aaKnown RBP14.46□□□□□ -0.09
CLN3-263ENST00000637871 COA6Q5JTJ3 125 aaKnown RBP14.46□□□□□ -0.09
CLN3-263ENST00000637871 ACTL10Q5JWF8 245 aa14.46□□□□□ -0.09
CLN3-263ENST00000637871 Q8N9W7 124 aa14.46□□□□□ -0.09
CLN3-263ENST00000637871 C5orf17Q8NAS9 161 aa14.46□□□□□ -0.09
CLN3-263ENST00000637871 IGF2BP2-AS1Q96M15 143 aa14.46□□□□□ -0.09
CLN3-263ENST00000637871 C12orf57Q99622 126 aa14.46□□□□□ -0.09
CLN3-263ENST00000637871 EPDR1Q9UM22 224 aa14.46□□□□□ -0.09
CLN3-263ENST00000637871 ANK3Q12955 4377 aaKnown RBP14.46□□□□□ -0.09
CLN3-263ENST00000637871 PGPEP1LA6NFU8 196 aa14.45□□□□□ -0.1
CLN3-263ENST00000637871 GP9P14770 177 aa14.45□□□□□ -0.1
CLN3-263ENST00000637871 S100A2P29034 98 aa14.45□□□□□ -0.1
CLN3-263ENST00000637871 LYZP61626 148 aa14.45□□□□□ -0.1
CLN3-263ENST00000637871 TMEM183BQ1AE95 376 aa14.45□□□□□ -0.1
CLN3-263ENST00000637871 RPEL1Q2QD12 228 aa14.45□□□□□ -0.1
CLN3-263ENST00000637871 FAM231DQ6ZW35 169 aa14.45□□□□□ -0.1
CLN3-263ENST00000637871 LYPD1Q8N2G4 141 aa14.45□□□□□ -0.1
CLN3-263ENST00000637871 SLC25A39Q9BZJ4 359 aaPredicted RBP14.45□□□□□ -0.1
CLN3-263ENST00000637871 KLF12Q9Y4X4 402 aa14.45□□□□□ -0.1
CLN3-263ENST00000637871 TEP1Q99973 2627 aaKnown RBP14.45□□□□□ -0.1
CLN3-263ENST00000637871 TRBV9A0A0B4J1U6 114 aa14.44□□□□□ -0.1
CLN3-263ENST00000637871 GNG7O60262 68 aa14.44□□□□□ -0.1
CLN3-263ENST00000637871 SAA4P35542 130 aa14.44□□□□□ -0.1
CLN3-263ENST00000637871 VN1R17PQ8TDU5 208 aa14.44□□□□□ -0.1
CLN3-263ENST00000637871 FANCD2OSQ96PS1 177 aa14.44□□□□□ -0.1
CLN3-263ENST00000637871 SHANK2-AS3Q9BTD1 123 aa14.44□□□□□ -0.1
CLN3-263ENST00000637871 OTORQ9NRC9 128 aa14.44□□□□□ -0.1
CLN3-263ENST00000637871 AURKAIP1Q9NWT8 199 aaPredicted RBP14.44□□□□□ -0.1
CLN3-263ENST00000637871 GAR1Q9NY12 217 aaKnown RBP14.44□□□□□ -0.1
CLN3-263ENST00000637871 WI2-2373I1.2A0A1W2PRP0 233 aa14.44□□□□□ -0.1
CLN3-263ENST00000637871 CD24P25063 80 aa14.44□□□□□ -0.1
CLN3-263ENST00000637871 ASPHD1Q5U4P2 390 aa14.44□□□□□ -0.1
CLN3-263ENST00000637871 RUSC1-AS1Q66K80 236 aa14.44□□□□□ -0.1
CLN3-263ENST00000637871 BPIFA4PQ86YQ2 179 aa14.44□□□□□ -0.1
CLN3-263ENST00000637871 AJUBAQ96IF1 538 aa14.44□□□□□ -0.1
CLN3-263ENST00000637871 V9GYV3 84 aa14.44□□□□□ -0.1
CLN3-263ENST00000637871 SONP18583 2426 aaKnown RBP14.43□□□□□ -0.1
CLN3-263ENST00000637871 IGHV3-21A0A0B4J1V1 117 aa14.43□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms