RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 YTHDF2Q9Y5A9 579 aaKnown RBP13.75□□□□□ -0.21
CLN3-262ENST00000637699 V9GYH0 126 aa13.75□□□□□ -0.21
CLN3-262ENST00000637699 LOC102723971A0A1B0GUV8 181 aa13.74□□□□□ -0.21
CLN3-262ENST00000637699 HBE1P02100 147 aa13.74□□□□□ -0.21
CLN3-262ENST00000637699 OXA1LQ15070 435 aa13.74□□□□□ -0.21
CLN3-262ENST00000637699 TMEM268Q5VZI3 342 aa13.74□□□□□ -0.21
CLN3-262ENST00000637699 C1orf158Q8N1D5 194 aa13.74□□□□□ -0.21
CLN3-262ENST00000637699 TRIM63Q969Q1 353 aa13.74□□□□□ -0.21
CLN3-262ENST00000637699 TMEM56-RWDD3S4R434 201 aa13.74□□□□□ -0.21
CLN3-262ENST00000637699 C16orf90A8MZG2 172 aa13.73□□□□□ -0.21
CLN3-262ENST00000637699 F6UB75 175 aa13.73□□□□□ -0.21
CLN3-262ENST00000637699 DAD1P61803 113 aa13.73□□□□□ -0.21
CLN3-262ENST00000637699 PSG9Q00887 426 aa13.73□□□□□ -0.21
CLN3-262ENST00000637699 TNP2Q05952 138 aa13.73□□□□□ -0.21
CLN3-262ENST00000637699 KLF9Q13886 244 aaPredicted RBP13.73□□□□□ -0.21
CLN3-262ENST00000637699 ZNF79Q15937 498 aa13.73□□□□□ -0.21
CLN3-262ENST00000637699 PYDC2Q56P42 97 aa13.73□□□□□ -0.21
CLN3-262ENST00000637699 NOXA1Q86UR1 476 aa13.73□□□□□ -0.21
CLN3-262ENST00000637699 CLUHP3Q96NS8 147 aa13.73□□□□□ -0.21
CLN3-262ENST00000637699 PFDN2Q9UHV9 154 aa13.73□□□□□ -0.21
CLN3-262ENST00000637699 TMED3Q9Y3Q3 217 aa13.73□□□□□ -0.21
CLN3-262ENST00000637699 NUP62P37198 522 aaPredicted RBP13.72□□□□□ -0.21
CLN3-262ENST00000637699 PSMB3P49720 205 aa13.72□□□□□ -0.21
CLN3-262ENST00000637699 SUPT4H1P63272 117 aaKnown RBP13.72□□□□□ -0.21
CLN3-262ENST00000637699 RRN3P1Q2M238 152 aa13.72□□□□□ -0.21
CLN3-262ENST00000637699 AKR1C4P17516 323 aa13.71□□□□□ -0.21
CLN3-262ENST00000637699 NMSQ5H8A3 153 aa13.71□□□□□ -0.21
CLN3-262ENST00000637699 FAM78BQ5VT40 261 aa13.71□□□□□ -0.21
CLN3-262ENST00000637699 EBLN2Q6P2I7 272 aa13.71□□□□□ -0.21
CLN3-262ENST00000637699 CCDC190Q86UF4 302 aa13.71□□□□□ -0.21
CLN3-262ENST00000637699 SCGB3A2Q96PL1 93 aa13.71□□□□□ -0.21
CLN3-262ENST00000637699 KCNIP3Q9Y2W7 256 aa13.71□□□□□ -0.21
CLN3-262ENST00000637699 ZFP92A6NM28 416 aa13.7□□□□□ -0.22
CLN3-262ENST00000637699 SOCS3O14543 225 aa13.7□□□□□ -0.22
CLN3-262ENST00000637699 S100A5P33763 92 aa13.7□□□□□ -0.22
CLN3-262ENST00000637699 ZNF90Q03938 601 aa13.7□□□□□ -0.22
CLN3-262ENST00000637699 SPATA31B1PQ5VZV4 182 aa13.7□□□□□ -0.22
CLN3-262ENST00000637699 OR8G2PQ6IF36 304 aa13.7□□□□□ -0.22
CLN3-262ENST00000637699 MAPKAPK5-AS1Q8N8E1 139 aa13.7□□□□□ -0.22
CLN3-262ENST00000637699 ATG101Q9BSB4 218 aa13.7□□□□□ -0.22
CLN3-262ENST00000637699 MAGT1Q9H0U3 335 aa13.7□□□□□ -0.22
CLN3-262ENST00000637699 SULT1A3P0DMM9 295 aa13.69□□□□□ -0.22
CLN3-262ENST00000637699 SULT1A4P0DMN0 295 aa13.69□□□□□ -0.22
CLN3-262ENST00000637699 LYZP61626 148 aa13.69□□□□□ -0.22
CLN3-262ENST00000637699 TOMM5Q8N4H5 51 aa13.69□□□□□ -0.22
CLN3-262ENST00000637699 C15orf53Q8NAA6 179 aa13.69□□□□□ -0.22
CLN3-262ENST00000637699 IL22RA2Q969J5 263 aa13.69□□□□□ -0.22
CLN3-262ENST00000637699 TMEM208Q9BTX3 173 aa13.69□□□□□ -0.22
CLN3-262ENST00000637699 A0A0J9YX75 114 aa13.68□□□□□ -0.22
CLN3-262ENST00000637699 ZNF701M0R085 212 aaPredicted RBP13.68□□□□□ -0.22
CLN3-262ENST00000637699 CDK2AP2O75956 126 aa13.68□□□□□ -0.22
CLN3-262ENST00000637699 PAX9P55771 341 aa13.68□□□□□ -0.22
CLN3-262ENST00000637699 FAM3BP58499 235 aaPredicted RBP13.68□□□□□ -0.22
CLN3-262ENST00000637699 C1orf194Q5T5A4 169 aa13.68□□□□□ -0.22
CLN3-262ENST00000637699 LYZL2Q7Z4W2 148 aa13.68□□□□□ -0.22
CLN3-262ENST00000637699 LGI3Q8N145 548 aa13.68□□□□□ -0.22
CLN3-262ENST00000637699 PPP1R14BQ96C90 147 aa13.68□□□□□ -0.22
CLN3-262ENST00000637699 U3KQ87 197 aa13.68□□□□□ -0.22
CLN3-262ENST00000637699 APOBP04114 4563 aaKnown RBP13.68□□□□□ -0.22
CLN3-262ENST00000637699 IGKV1D-37A0A075B6S9 117 aa13.67□□□□□ -0.22
CLN3-262ENST00000637699 ISLRO14498 428 aa13.67□□□□□ -0.22
CLN3-262ENST00000637699 PRM2P04554 102 aa13.67□□□□□ -0.22
CLN3-262ENST00000637699 FAUP35544 74 aaKnown RBP13.67□□□□□ -0.22
CLN3-262ENST00000637699 OR2F1Q13607 317 aa13.67□□□□□ -0.22
CLN3-262ENST00000637699 GAMTQ14353 236 aa13.67□□□□□ -0.22
CLN3-262ENST00000637699 OR8I2Q8N0Y5 310 aa13.67□□□□□ -0.22
CLN3-262ENST00000637699 DTD1Q8TEA8 209 aa13.67□□□□□ -0.22
CLN3-262ENST00000637699 CACFD1Q9UGQ2 172 aa13.67□□□□□ -0.22
CLN3-262ENST00000637699 AP3S2P59780 193 aa13.66□□□□□ -0.22
CLN3-262ENST00000637699 TMED4Q7Z7H5 227 aa13.66□□□□□ -0.22
CLN3-262ENST00000637699 C16orf92Q96LL3 132 aa13.66□□□□□ -0.22
CLN3-262ENST00000637699 C20orf173Q96LM9 149 aa13.66□□□□□ -0.22
CLN3-262ENST00000637699 RBKSQ9H477 322 aa13.66□□□□□ -0.22
CLN3-262ENST00000637699 RPRMQ9NS64 109 aa13.66□□□□□ -0.22
CLN3-262ENST00000637699 A0A0B4J2A0 478 aa13.65□□□□□ -0.22
CLN3-262ENST00000637699 NBDYA0A0U1RRE5 68 aa13.65□□□□□ -0.22
CLN3-262ENST00000637699 ZNF705GA8MUZ8 300 aaPredicted RBP13.65□□□□□ -0.22
CLN3-262ENST00000637699 SNRPGP15A8MWD9 76 aa13.65□□□□□ -0.22
CLN3-262ENST00000637699 C6orf223Q8N319 242 aa13.65□□□□□ -0.22
CLN3-262ENST00000637699 SLC35E1Q96K37 410 aa13.65□□□□□ -0.22
CLN3-262ENST00000637699 IGF2BP2-AS1Q96M15 143 aa13.65□□□□□ -0.22
CLN3-262ENST00000637699 DOK5Q9P104 306 aa13.65□□□□□ -0.22
CLN3-262ENST00000637699 SHPKQ9UHJ6 478 aa13.65□□□□□ -0.22
CLN3-262ENST00000637699 NUDT3O95989 172 aa13.64□□□□□ -0.23
CLN3-262ENST00000637699 FABP1P07148 127 aa13.64□□□□□ -0.23
CLN3-262ENST00000637699 DEFB130BP0DP73 79 aa13.64□□□□□ -0.23
CLN3-262ENST00000637699 DEFB130AP0DP74 79 aa13.64□□□□□ -0.23
CLN3-262ENST00000637699 GPX4P36969 197 aaPredicted RBP13.64□□□□□ -0.23
CLN3-262ENST00000637699 CCR6P51684 374 aa13.64□□□□□ -0.23
CLN3-262ENST00000637699 SMCO1Q147U7 214 aa13.64□□□□□ -0.23
CLN3-262ENST00000637699 SPANXN2Q5MJ10 180 aa13.64□□□□□ -0.23
CLN3-262ENST00000637699 ZNRF2Q8NHG8 242 aa13.64□□□□□ -0.23
CLN3-262ENST00000637699 SRRQ9GZT4 340 aa13.64□□□□□ -0.23
CLN3-262ENST00000637699 HSPB7Q9UBY9 170 aa13.64□□□□□ -0.23
CLN3-262ENST00000637699 DNAH5Q8TE73 4624 aa13.63□□□□□ -0.23
CLN3-262ENST00000637699 ANXA3P12429 323 aa13.63□□□□□ -0.23
CLN3-262ENST00000637699 TMEM128Q5BJH2 165 aa13.63□□□□□ -0.23
CLN3-262ENST00000637699 AMTNQ6UX39 209 aa13.63□□□□□ -0.23
CLN3-262ENST00000637699 SLC25A21Q9BQT8 299 aaPredicted RBP13.63□□□□□ -0.23
CLN3-262ENST00000637699 LYRM9A8MSI8 78 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms