RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 USF2Q15853 346 aaPredicted RBP13.08□□□□□ -0.31
CLN3-252ENST00000636907 LEMD1Q68G75 181 aa13.08□□□□□ -0.31
CLN3-252ENST00000636907 FXYD5Q96DB9 178 aa13.08□□□□□ -0.31
CLN3-252ENST00000636907 TXNDC17Q9BRA2 123 aa13.08□□□□□ -0.31
CLN3-252ENST00000636907 PRSS22Q9GZN4 317 aa13.08□□□□□ -0.31
CLN3-252ENST00000636907 NPFFR1Q9GZQ6 430 aa13.08□□□□□ -0.31
CLN3-252ENST00000636907 KLK15Q9H2R5 256 aa13.08□□□□□ -0.31
CLN3-252ENST00000636907 ZNF702PQ9H963 129 aa13.08□□□□□ -0.31
CLN3-252ENST00000636907 GAR1Q9NY12 217 aaKnown RBP13.08□□□□□ -0.31
CLN3-252ENST00000636907 PUS1Q9Y606 427 aaKnown RBP eCLIP13.08□□□□□ -0.31
CLN3-252ENST00000636907 ARL2-SNX15V9GYD0 113 aa13.08□□□□□ -0.31
CLN3-252ENST00000636907 ZNF329Q86UD4 541 aa13.08□□□□□ -0.32
CLN3-252ENST00000636907 STXBP6Q8NFX7 210 aa13.08□□□□□ -0.32
CLN3-252ENST00000636907 GNB4Q9HAV0 340 aa13.08□□□□□ -0.32
CLN3-252ENST00000636907 H3BQ15 152 aa13.07□□□□□ -0.32
CLN3-252ENST00000636907 H3BRN7 92 aa13.07□□□□□ -0.32
CLN3-252ENST00000636907 PDE6DO43924 150 aa13.07□□□□□ -0.32
CLN3-252ENST00000636907 HNF1AP20823 631 aa13.07□□□□□ -0.32
CLN3-252ENST00000636907 NPPCP23582 126 aa13.07□□□□□ -0.32
CLN3-252ENST00000636907 ZNF600Q6ZNG1 722 aa13.07□□□□□ -0.32
CLN3-252ENST00000636907 LCNL1Q6ZST4 164 aa13.07□□□□□ -0.32
CLN3-252ENST00000636907 TMEM86BQ8N661 226 aa13.07□□□□□ -0.32
CLN3-252ENST00000636907 RPUSD4Q96CM3 377 aaKnown RBP13.07□□□□□ -0.32
CLN3-252ENST00000636907 SMR3AQ99954 134 aa13.07□□□□□ -0.32
CLN3-252ENST00000636907 SHANK2-AS3Q9BTD1 123 aa13.07□□□□□ -0.32
CLN3-252ENST00000636907 C20orf24Q9BUV8 137 aa13.07□□□□□ -0.32
CLN3-252ENST00000636907 MYO9AB2RTY4 2548 aa13.06□□□□□ -0.32
CLN3-252ENST00000636907 ANK3Q12955 4377 aaKnown RBP13.06□□□□□ -0.32
CLN3-252ENST00000636907 ACANP16112 2415 aa13.06□□□□□ -0.32
CLN3-252ENST00000636907 IGHV3-35A0A0C4DH35 117 aa13.06□□□□□ -0.32
CLN3-252ENST00000636907 F6UZH7 168 aa13.06□□□□□ -0.32
CLN3-252ENST00000636907 SNRPCP09234 159 aaKnown RBP13.06□□□□□ -0.32
CLN3-252ENST00000636907 GP9P14770 177 aa13.06□□□□□ -0.32
CLN3-252ENST00000636907 USMG5Q96IX5 58 aa13.06□□□□□ -0.32
CLN3-252ENST00000636907 ATP6V0BQ99437 205 aa13.06□□□□□ -0.32
CLN3-252ENST00000636907 NIPSNAP3BQ9BS92 247 aa13.06□□□□□ -0.32
CLN3-252ENST00000636907 PARLQ9H300 379 aa13.06□□□□□ -0.32
CLN3-252ENST00000636907 PPP5D1E7EU14 171 aa13.05□□□□□ -0.32
CLN3-252ENST00000636907 M0R036 132 aa13.05□□□□□ -0.32
CLN3-252ENST00000636907 RAB9AP51151 201 aa13.05□□□□□ -0.32
CLN3-252ENST00000636907 BTN1A1Q13410 526 aa13.05□□□□□ -0.32
CLN3-252ENST00000636907 ZNF674Q2M3X9 581 aa13.05□□□□□ -0.32
CLN3-252ENST00000636907 AWAT1Q58HT5 328 aa13.05□□□□□ -0.32
CLN3-252ENST00000636907 SONP18583 2426 aaKnown RBP13.05□□□□□ -0.32
CLN3-252ENST00000636907 A0A1W2PRE2 83 aa13.05□□□□□ -0.32
CLN3-252ENST00000636907 ZNF727A8MUV8 499 aa13.05□□□□□ -0.32
CLN3-252ENST00000636907 IGHG4P01861 327 aa13.05□□□□□ -0.32
CLN3-252ENST00000636907 C10orf99Q6UWK7 81 aa13.05□□□□□ -0.32
CLN3-252ENST00000636907 TOMM20LQ6UXN7 152 aa13.05□□□□□ -0.32
CLN3-252ENST00000636907 SMIM7Q9BQ49 75 aa13.05□□□□□ -0.32
CLN3-252ENST00000636907 ZFAND3Q9H8U3 227 aa13.05□□□□□ -0.32
CLN3-252ENST00000636907 SCO2A0A1W2PP80 73 aa13.04□□□□□ -0.32
CLN3-252ENST00000636907 DNAJC9-AS1A6NH13 148 aa13.04□□□□□ -0.32
CLN3-252ENST00000636907 GGTLC3B5MD39 225 aa13.04□□□□□ -0.32
CLN3-252ENST00000636907 IGHV3-11P01762 117 aa13.04□□□□□ -0.32
CLN3-252ENST00000636907 PSMB8P28062 276 aa13.04□□□□□ -0.32
CLN3-252ENST00000636907 ZNF343Q6P1L6 599 aa13.04□□□□□ -0.32
CLN3-252ENST00000636907 TVP23CQ96ET8 276 aa13.04□□□□□ -0.32
CLN3-252ENST00000636907 TMEM14CQ9P0S9 112 aa13.04□□□□□ -0.32
CLN3-252ENST00000636907 IGHV3OR16-8A0A075B7F1 116 aa13.03□□□□□ -0.32
CLN3-252ENST00000636907 ZNF98A6NK75 572 aa13.03□□□□□ -0.32
CLN3-252ENST00000636907 NDUFB4O95168 129 aa13.03□□□□□ -0.32
CLN3-252ENST00000636907 TRBV12-3P01733 135 aa13.03□□□□□ -0.32
CLN3-252ENST00000636907 Q8N2B8 174 aa13.03□□□□□ -0.32
CLN3-252ENST00000636907 BLNKQ8WV28 456 aa13.03□□□□□ -0.32
CLN3-252ENST00000636907 TMEM160Q9NX00 188 aa13.03□□□□□ -0.32
CLN3-252ENST00000636907 RABAC1Q9UI14 185 aa13.03□□□□□ -0.32
CLN3-252ENST00000636907 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP13.02□□□□□ -0.32
CLN3-252ENST00000636907 A0A0G2JLM5 398 aa13.02□□□□□ -0.32
CLN3-252ENST00000636907 NBEAP1P0C6P0 100 aa13.02□□□□□ -0.32
CLN3-252ENST00000636907 ARL3P36405 182 aa13.02□□□□□ -0.32
CLN3-252ENST00000636907 SUMO1P63165 101 aaKnown RBP13.02□□□□□ -0.32
CLN3-252ENST00000636907 FAM74A3Q4VXF1 159 aa13.02□□□□□ -0.32
CLN3-252ENST00000636907 S100A7AQ86SG5 101 aa13.02□□□□□ -0.32
CLN3-252ENST00000636907 DERL1Q9BUN8 251 aa13.02□□□□□ -0.32
CLN3-252ENST00000636907 ESM1Q9NQ30 184 aa13.02□□□□□ -0.32
CLN3-252ENST00000636907 TMEM89A2RUT3 159 aa13.02□□□□□ -0.33
CLN3-252ENST00000636907 C7orf77A4D0Y5 90 aa13.02□□□□□ -0.33
CLN3-252ENST00000636907 H3BTX0 84 aa13.02□□□□□ -0.33
CLN3-252ENST00000636907 DNASE2O00115 360 aaPredicted RBP13.02□□□□□ -0.33
CLN3-252ENST00000636907 BMPR1BO00238 502 aa13.02□□□□□ -0.33
CLN3-252ENST00000636907 LY6G6DO95868 133 aa13.02□□□□□ -0.33
CLN3-252ENST00000636907 AKR1C3P42330 323 aa13.02□□□□□ -0.33
CLN3-252ENST00000636907 RELQ04864 619 aaPredicted RBP13.02□□□□□ -0.33
CLN3-252ENST00000636907 BPIFA4PQ86YQ2 179 aa13.02□□□□□ -0.33
CLN3-252ENST00000636907 C11orf52Q96A22 123 aa13.02□□□□□ -0.33
CLN3-252ENST00000636907 SDF2L1Q9HCN8 221 aa13.02□□□□□ -0.33
CLN3-252ENST00000636907 RPS10P5Q9NQ39 176 aa13.02□□□□□ -0.33
CLN3-252ENST00000636907 MRPS12O15235 138 aaKnown RBP13.01□□□□□ -0.33
CLN3-252ENST00000636907 TMEM88Q6PEY1 159 aa13.01□□□□□ -0.33
CLN3-252ENST00000636907 OR4X2Q8NGF9 303 aa13.01□□□□□ -0.33
CLN3-252ENST00000636907 ELOVL1Q9BW60 279 aa13.01□□□□□ -0.33
CLN3-252ENST00000636907 NAT8Q9UHE5 227 aa13.01□□□□□ -0.33
CLN3-252ENST00000636907 NOTCH2Q04721 2471 aa13.01□□□□□ -0.33
CLN3-252ENST00000636907 OTOGQ6ZRI0 2925 aa13□□□□□ -0.33
CLN3-252ENST00000636907 CLPSL1A2RUU4 121 aa13□□□□□ -0.33
CLN3-252ENST00000636907 HIST1H1EP10412 219 aaKnown RBP13□□□□□ -0.33
CLN3-252ENST00000636907 CRYBB3P26998 211 aa13□□□□□ -0.33
CLN3-252ENST00000636907 RANP62826 216 aaKnown RBP13□□□□□ -0.33
CLN3-252ENST00000636907 SLC35B1P78383 322 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms