RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 COQ8AQ8NI60 647 aa9.95□□□□□ -0.82
CLN3-249ENST00000636685 ENKURQ8TC29 256 aa9.95□□□□□ -0.82
CLN3-249ENST00000636685 RXFP4Q8TDU9 374 aa9.95□□□□□ -0.82
CLN3-249ENST00000636685 C15orf40Q8WUR7 153 aa9.95□□□□□ -0.82
CLN3-249ENST00000636685 TRAV30A0A087WSZ9 112 aa9.94□□□□□ -0.82
CLN3-249ENST00000636685 A0A0J9YX75 114 aa9.94□□□□□ -0.82
CLN3-249ENST00000636685 IL4P05112 153 aa9.94□□□□□ -0.82
CLN3-249ENST00000636685 IGLC1P0CG04 106 aa9.94□□□□□ -0.82
CLN3-249ENST00000636685 ID1P41134 155 aa9.94□□□□□ -0.82
CLN3-249ENST00000636685 PAX9P55771 341 aa9.94□□□□□ -0.82
CLN3-249ENST00000636685 SCAND1P57086 179 aa9.94□□□□□ -0.82
CLN3-249ENST00000636685 SPATA31B1PQ5VZV4 182 aa9.94□□□□□ -0.82
CLN3-249ENST00000636685 EBLN2Q6P2I7 272 aa9.94□□□□□ -0.82
CLN3-249ENST00000636685 SLC35G3Q8N808 338 aa9.94□□□□□ -0.82
CLN3-249ENST00000636685 ZBTB8BQ8NAP8 495 aaPredicted RBP9.94□□□□□ -0.82
CLN3-249ENST00000636685 OR1S2Q8NGQ3 325 aa9.94□□□□□ -0.82
CLN3-249ENST00000636685 DEFB104AQ8WTQ1 72 aa9.94□□□□□ -0.82
CLN3-249ENST00000636685 ABHD1Q96SE0 405 aa9.94□□□□□ -0.82
CLN3-249ENST00000636685 LINC00854A0A1B0GVQ3 168 aa9.93□□□□□ -0.82
CLN3-249ENST00000636685 FAM240BA0A1B0GVZ2 78 aa9.93□□□□□ -0.82
CLN3-249ENST00000636685 CENPXA8MT69 81 aa9.93□□□□□ -0.82
CLN3-249ENST00000636685 SOCS3O14543 225 aa9.93□□□□□ -0.82
CLN3-249ENST00000636685 CTDSPLO15194 276 aa9.93□□□□□ -0.82
CLN3-249ENST00000636685 LYRM1O43325 122 aa9.93□□□□□ -0.82
CLN3-249ENST00000636685 SCGNO76038 276 aa9.93□□□□□ -0.82
CLN3-249ENST00000636685 HLA-DMAP28067 261 aa9.93□□□□□ -0.82
CLN3-249ENST00000636685 PSMB3P49720 205 aa9.93□□□□□ -0.82
CLN3-249ENST00000636685 SUB1P53999 127 aaKnown RBP eCLIP9.93□□□□□ -0.82
CLN3-249ENST00000636685 UBE2NLQ5JXB2 153 aa9.93□□□□□ -0.82
CLN3-249ENST00000636685 AMTNQ6UX39 209 aa9.93□□□□□ -0.82
CLN3-249ENST00000636685 OR5AP2Q8NGF4 316 aa9.93□□□□□ -0.82
CLN3-249ENST00000636685 MRGPRFQ96AM1 343 aa9.93□□□□□ -0.82
CLN3-249ENST00000636685 TMEM70Q9BUB7 260 aa9.93□□□□□ -0.82
CLN3-249ENST00000636685 KLK11Q9UBX7 282 aa9.93□□□□□ -0.82
CLN3-249ENST00000636685 LRP2P98164 4655 aa9.92□□□□□ -0.82
CLN3-249ENST00000636685 TRAV18A0A075B6X5 111 aa9.92□□□□□ -0.82
CLN3-249ENST00000636685 GPR31O00270 319 aa9.92□□□□□ -0.82
CLN3-249ENST00000636685 CRXO43186 299 aaPredicted RBP9.92□□□□□ -0.82
CLN3-249ENST00000636685 GSTZ1O43708 216 aaPredicted RBP9.92□□□□□ -0.82
CLN3-249ENST00000636685 CCNKO75909 580 aa9.92□□□□□ -0.82
CLN3-249ENST00000636685 PLA2G1BP04054 148 aaKnown RBP9.92□□□□□ -0.82
CLN3-249ENST00000636685 TSPOP30536 169 aa9.92□□□□□ -0.82
CLN3-249ENST00000636685 YPEL3P61236 119 aaPredicted RBP9.92□□□□□ -0.82
CLN3-249ENST00000636685 PHLDA2Q53GA4 152 aa9.92□□□□□ -0.82
CLN3-249ENST00000636685 CMTM1Q8IZ96 169 aa9.92□□□□□ -0.82
CLN3-249ENST00000636685 GPR146Q96CH1 333 aa9.92□□□□□ -0.82
CLN3-249ENST00000636685 S100A16Q96FQ6 103 aaKnown RBP9.92□□□□□ -0.82
CLN3-249ENST00000636685 ZNF2Q9BSG1 426 aaPredicted RBP9.92□□□□□ -0.82
CLN3-249ENST00000636685 FXYD6Q9H0Q3 95 aa9.92□□□□□ -0.82
CLN3-249ENST00000636685 EHFQ9NZC4 300 aa9.92□□□□□ -0.82
CLN3-249ENST00000636685 MEIS3P1A6NDR6 274 aa9.91□□□□□ -0.82
CLN3-249ENST00000636685 INS-IGF2F8WCM5 200 aa9.91□□□□□ -0.82
CLN3-249ENST00000636685 M0R2Z0 102 aa9.91□□□□□ -0.82
CLN3-249ENST00000636685 INSP01308 110 aa9.91□□□□□ -0.82
CLN3-249ENST00000636685 M6PRP20645 277 aa9.91□□□□□ -0.82
CLN3-249ENST00000636685 OR10J1P30954 320 aa9.91□□□□□ -0.82
CLN3-249ENST00000636685 RND2P52198 227 aa9.91□□□□□ -0.82
CLN3-249ENST00000636685 SPINK13Q1W4C9 94 aa9.91□□□□□ -0.82
CLN3-249ENST00000636685 OR5H6Q8NGV6 325 aa9.91□□□□□ -0.82
CLN3-249ENST00000636685 OR6F1Q8NGZ6 308 aa9.91□□□□□ -0.82
CLN3-249ENST00000636685 A8MTW9 85 aa9.9□□□□□ -0.82
CLN3-249ENST00000636685 SIVA1O15304 175 aa9.9□□□□□ -0.82
CLN3-249ENST00000636685 HOXA5P20719 270 aa9.9□□□□□ -0.82
CLN3-249ENST00000636685 MRPS10P82664 201 aaKnown RBP9.9□□□□□ -0.82
CLN3-249ENST00000636685 PRSS54Q6PEW0 395 aa9.9□□□□□ -0.82
CLN3-249ENST00000636685 DHRS11Q6UWP2 260 aa9.9□□□□□ -0.82
CLN3-249ENST00000636685 C20orf173Q96LM9 149 aa9.9□□□□□ -0.82
CLN3-249ENST00000636685 MARVELD1Q9BSK0 173 aa9.9□□□□□ -0.82
CLN3-249ENST00000636685 FAM30AQ9NZY2 134 aa9.9□□□□□ -0.82
CLN3-249ENST00000636685 DOK5Q9P104 306 aa9.9□□□□□ -0.82
CLN3-249ENST00000636685 PAIP2BQ9ULR5 123 aaKnown RBP9.9□□□□□ -0.82
CLN3-249ENST00000636685 PKHD1L1Q86WI1 4243 aa9.9□□□□□ -0.83
CLN3-249ENST00000636685 P0C879 139 aa9.89□□□□□ -0.83
CLN3-249ENST00000636685 TBC1D26Q86UD7 250 aa9.89□□□□□ -0.83
CLN3-249ENST00000636685 BAP18Q8IXM2 172 aa9.89□□□□□ -0.83
CLN3-249ENST00000636685 TOMM5Q8N4H5 51 aa9.89□□□□□ -0.83
CLN3-249ENST00000636685 OR51G1Q8NGK1 321 aa9.89□□□□□ -0.83
CLN3-249ENST00000636685 RNF125Q96EQ8 232 aa9.89□□□□□ -0.83
CLN3-249ENST00000636685 NOP10Q9NPE3 64 aaKnown RBP9.89□□□□□ -0.83
CLN3-249ENST00000636685 FAM212BQ9NTI7 297 aaPredicted RBP9.89□□□□□ -0.83
CLN3-249ENST00000636685 COPZ2Q9P299 210 aa9.89□□□□□ -0.83
CLN3-249ENST00000636685 A0A0B4J293 547 aa9.88□□□□□ -0.83
CLN3-249ENST00000636685 NAP1L6A6NFF2 107 aa9.88□□□□□ -0.83
CLN3-249ENST00000636685 INMT-MINDY4F8WBC2 141 aa9.88□□□□□ -0.83
CLN3-249ENST00000636685 RD3LP0DJH9 198 aa9.88□□□□□ -0.83
CLN3-249ENST00000636685 AP3S2P59780 193 aa9.88□□□□□ -0.83
CLN3-249ENST00000636685 NFE4Q86UQ8 179 aa9.88□□□□□ -0.83
CLN3-249ENST00000636685 LINC00528Q8N1L1 170 aa9.88□□□□□ -0.83
CLN3-249ENST00000636685 OR11H7Q8NGC8 314 aa9.88□□□□□ -0.83
CLN3-249ENST00000636685 RPRMQ9NS64 109 aa9.88□□□□□ -0.83
CLN3-249ENST00000636685 TIMM8BQ9Y5J9 83 aaPredicted RBP9.88□□□□□ -0.83
CLN3-249ENST00000636685 TRAV12-2A0A075B6T6 113 aa9.87□□□□□ -0.83
CLN3-249ENST00000636685 IGLV5-52A0A0A0MRZ9 124 aa9.87□□□□□ -0.83
CLN3-249ENST00000636685 ISLRO14498 428 aa9.87□□□□□ -0.83
CLN3-249ENST00000636685 NXPH3O95157 252 aa9.87□□□□□ -0.83
CLN3-249ENST00000636685 TOMM40O96008 361 aa9.87□□□□□ -0.83
CLN3-249ENST00000636685 IGKV1-5P01602 117 aa9.87□□□□□ -0.83
CLN3-249ENST00000636685 PMP2P02689 132 aa9.87□□□□□ -0.83
CLN3-249ENST00000636685 HTN1P15515 57 aa9.87□□□□□ -0.83
CLN3-249ENST00000636685 B2MP61769 119 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms