RNA–Protein interactions for RNA: ENST00000635776.1

SCN1A-210, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 10,107 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-210ENST00000635776 PRNTQ86SH4 94 aa3.64□□□□□ -1.83
SCN1A-210ENST00000635776 FXYD5Q96DB9 178 aa3.64□□□□□ -1.83
SCN1A-210ENST00000635776 MRPL53Q96EL3 112 aaKnown RBP3.64□□□□□ -1.83
SCN1A-210ENST00000635776 PRDM13Q9H4Q3 707 aa3.64□□□□□ -1.83
SCN1A-210ENST00000635776 CBLN1P23435 193 aa3.64□□□□□ -1.83
SCN1A-210ENST00000635776 ATP5J2P56134 94 aa3.64□□□□□ -1.83
SCN1A-210ENST00000635776 Q86TA4 180 aa3.64□□□□□ -1.83
SCN1A-210ENST00000635776 F2Z2F3 143 aa3.64□□□□□ -1.83
SCN1A-210ENST00000635776 OR2J3O76001 311 aa3.64□□□□□ -1.83
SCN1A-210ENST00000635776 AMBPP02760 352 aa3.64□□□□□ -1.83
SCN1A-210ENST00000635776 CRYGBP07316 175 aa3.64□□□□□ -1.83
SCN1A-210ENST00000635776 RPL15P61313 204 aaKnown RBP3.64□□□□□ -1.83
SCN1A-210ENST00000635776 BATFQ16520 125 aa3.64□□□□□ -1.83
SCN1A-210ENST00000635776 ECSCRQ19T08 205 aa3.64□□□□□ -1.83
SCN1A-210ENST00000635776 RNASEKQ6P5S7 137 aaKnown RBP3.64□□□□□ -1.83
SCN1A-210ENST00000635776 OTOGLQ3ZCN5 2332 aa3.64□□□□□ -1.83
SCN1A-210ENST00000635776 FABP5P3A8MUU1 101 aa3.64□□□□□ -1.83
SCN1A-210ENST00000635776 I3L2K1 104 aa3.64□□□□□ -1.83
SCN1A-210ENST00000635776 SLC17A3O00476 420 aa3.64□□□□□ -1.83
SCN1A-210ENST00000635776 PLAUP00749 431 aa3.64□□□□□ -1.83
SCN1A-210ENST00000635776 PSG3Q16557 428 aa3.64□□□□□ -1.83
SCN1A-210ENST00000635776 NEU1Q99519 415 aa3.64□□□□□ -1.83
SCN1A-210ENST00000635776 PMCHL2Q9BQD1 86 aa3.64□□□□□ -1.83
SCN1A-210ENST00000635776 NDUFAF3Q9BU61 184 aa3.64□□□□□ -1.83
SCN1A-210ENST00000635776 DERL1Q9BUN8 251 aa3.64□□□□□ -1.83
SCN1A-210ENST00000635776 SOD3P08294 240 aa3.64□□□□□ -1.83
SCN1A-210ENST00000635776 Q8N7P7 452 aa3.64□□□□□ -1.83
SCN1A-210ENST00000635776 TBX15Q96SF7 602 aa3.64□□□□□ -1.83
SCN1A-210ENST00000635776 SPTA1P02549 2419 aa3.63□□□□□ -1.83
SCN1A-210ENST00000635776 LY6LH3BQJ8 138 aa3.63□□□□□ -1.83
SCN1A-210ENST00000635776 HSPB9Q9BQS6 159 aa3.63□□□□□ -1.83
SCN1A-210ENST00000635776 LENEPQ9Y5L5 61 aa3.63□□□□□ -1.83
SCN1A-210ENST00000635776 HIGD1CA8MV81 97 aa3.63□□□□□ -1.83
SCN1A-210ENST00000635776 DIRC3C9JPN6 131 aa3.63□□□□□ -1.83
SCN1A-210ENST00000635776 OVOL1O14753 267 aa3.63□□□□□ -1.83
SCN1A-210ENST00000635776 MYOD1P15172 320 aa3.63□□□□□ -1.83
SCN1A-210ENST00000635776 ADMP35318 185 aa3.63□□□□□ -1.83
SCN1A-210ENST00000635776 CDKN1AP38936 164 aa3.63□□□□□ -1.83
SCN1A-210ENST00000635776 FAM167A-AS1Q96KT0 104 aa3.63□□□□□ -1.83
SCN1A-210ENST00000635776 UQCR10Q9UDW1 63 aa3.63□□□□□ -1.83
SCN1A-210ENST00000635776 EP300Q09472 2414 aaPredicted RBP3.63□□□□□ -1.83
SCN1A-210ENST00000635776 RBAKDNA6NC62 111 aa3.63□□□□□ -1.83
SCN1A-210ENST00000635776 LYNX1G3V0Z9 82 aa3.63□□□□□ -1.83
SCN1A-210ENST00000635776 LYNX1P0DP58 116 aa3.63□□□□□ -1.83
SCN1A-210ENST00000635776 PLCE1Q9P212 2302 aa3.63□□□□□ -1.83
SCN1A-210ENST00000635776 LEPROTL1O95214 131 aa3.63□□□□□ -1.83
SCN1A-210ENST00000635776 LTAP01374 205 aa3.63□□□□□ -1.83
SCN1A-210ENST00000635776 C11orf71Q6IPW1 123 aa3.63□□□□□ -1.83
SCN1A-210ENST00000635776 IGLV11-55A0A075B6I3 123 aa3.63□□□□□ -1.83
SCN1A-210ENST00000635776 TRAV41A0A0B4J266 112 aa3.63□□□□□ -1.83
SCN1A-210ENST00000635776 ZNF324O75467 553 aaPredicted RBP3.63□□□□□ -1.83
SCN1A-210ENST00000635776 ORM1P02763 201 aa3.63□□□□□ -1.83
SCN1A-210ENST00000635776 OR10J6PQ8NGY7 276 aa3.63□□□□□ -1.83
SCN1A-210ENST00000635776 RNASE7Q9H1E1 156 aaKnown RBP3.63□□□□□ -1.83
SCN1A-210ENST00000635776 PRORYQ9H606 182 aa3.63□□□□□ -1.83
SCN1A-210ENST00000635776 TRAV5A0A0B4J249 113 aa3.63□□□□□ -1.83
SCN1A-210ENST00000635776 A0A1W2PRD5 423 aa3.63□□□□□ -1.83
SCN1A-210ENST00000635776 A0A1W2PRF3 423 aa3.63□□□□□ -1.83
SCN1A-210ENST00000635776 A0A1W2PRM7 423 aa3.63□□□□□ -1.83
SCN1A-210ENST00000635776 TMEM89A2RUT3 159 aa3.63□□□□□ -1.83
SCN1A-210ENST00000635776 TEX22C9J3V5 150 aa3.63□□□□□ -1.83
SCN1A-210ENST00000635776 HIST1H1AQ02539 215 aaPredicted RBP3.63□□□□□ -1.83
SCN1A-210ENST00000635776 PYY3Q5JQD4 70 aa3.63□□□□□ -1.83
SCN1A-210ENST00000635776 ZNF491Q8N8L2 437 aa3.63□□□□□ -1.83
SCN1A-210ENST00000635776 OR10AG1Q8NH19 301 aa3.63□□□□□ -1.83
SCN1A-210ENST00000635776 UFC1Q9Y3C8 167 aa3.63□□□□□ -1.83
SCN1A-210ENST00000635776 GP9P14770 177 aa3.63□□□□□ -1.83
SCN1A-210ENST00000635776 RHOGP84095 191 aa3.63□□□□□ -1.83
SCN1A-210ENST00000635776 SHANK1Q9Y566 2161 aa3.63□□□□□ -1.83
SCN1A-210ENST00000635776 BTF3P20290 206 aaKnown RBP3.63□□□□□ -1.83
SCN1A-210ENST00000635776 HNRNPA3P51991 378 aaKnown RBP3.63□□□□□ -1.83
SCN1A-210ENST00000635776 CACNG7P62955 275 aa3.63□□□□□ -1.83
SCN1A-210ENST00000635776 FAM103A1Q9BTL3 118 aaKnown RBP3.63□□□□□ -1.83
SCN1A-210ENST00000635776 TPPP3Q9BW30 176 aa3.63□□□□□ -1.83
SCN1A-210ENST00000635776 IGF2BP2-AS1Q96M15 143 aa3.62□□□□□ -1.83
SCN1A-210ENST00000635776 AP1S3Q96PC3 154 aa3.62□□□□□ -1.83
SCN1A-210ENST00000635776 TMEM70Q9BUB7 260 aa3.62□□□□□ -1.83
SCN1A-210ENST00000635776 AP5S1Q9NUS5 200 aa3.62□□□□□ -1.83
SCN1A-210ENST00000635776 WI2-2373I1.2A0A1W2PRP0 233 aa3.62□□□□□ -1.83
SCN1A-210ENST00000635776 SPINK4O60575 86 aa3.62□□□□□ -1.83
SCN1A-210ENST00000635776 SERF1AO75920 110 aa3.62□□□□□ -1.83
SCN1A-210ENST00000635776 TMEM136Q6ZRR5 245 aa3.62□□□□□ -1.83
SCN1A-210ENST00000635776 SIRPDQ9H106 197 aa3.62□□□□□ -1.83
SCN1A-210ENST00000635776 DNAH12Q6ZR08 3092 aa3.62□□□□□ -1.83
SCN1A-210ENST00000635776 PCNX3Q9H6A9 2034 aa3.62□□□□□ -1.83
SCN1A-210ENST00000635776 CADP27708 2225 aa3.62□□□□□ -1.83
SCN1A-210ENST00000635776 IGHV3-21A0A0B4J1V1 117 aa3.62□□□□□ -1.83
SCN1A-210ENST00000635776 IGHV1-69DA0A0B4J2H0 117 aa3.62□□□□□ -1.83
SCN1A-210ENST00000635776 IGHV1-69P01742 117 aa3.62□□□□□ -1.83
SCN1A-210ENST00000635776 GPX1P07203 203 aa3.62□□□□□ -1.83
SCN1A-210ENST00000635776 S100A4P26447 101 aaKnown RBP3.62□□□□□ -1.83
SCN1A-210ENST00000635776 POLR3KQ9Y2Y1 108 aaPredicted RBP3.62□□□□□ -1.83
SCN1A-210ENST00000635776 PTPRZ1P23471 2315 aaPredicted RBP3.62□□□□□ -1.83
SCN1A-210ENST00000635776 TRGV3P03979 118 aa3.62□□□□□ -1.83
SCN1A-210ENST00000635776 TSPOP30536 169 aa3.62□□□□□ -1.83
SCN1A-210ENST00000635776 C22orf34Q6ZV56 151 aa3.62□□□□□ -1.83
SCN1A-210ENST00000635776 GSX1Q9H4S2 264 aaPredicted RBP3.62□□□□□ -1.83
SCN1A-210ENST00000635776 IGKV1OR2-108A0A075B7D4 117 aa3.62□□□□□ -1.83
SCN1A-210ENST00000635776 PGPEP1LA6NFU8 196 aa3.62□□□□□ -1.83
SCN1A-210ENST00000635776 A8MWP6 167 aa3.62□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms