RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 C4orf26Q17RF5 130 aa2.91□□□□□ -1.94
LINC00540-201ENST00000611481 MESTQ5EB52 335 aa2.91□□□□□ -1.94
LINC00540-201ENST00000611481 DHRS4L2Q6PKH6 230 aa2.91□□□□□ -1.94
LINC00540-201ENST00000611481 FAM131AQ6UXB0 335 aa2.91□□□□□ -1.94
LINC00540-201ENST00000611481 LINC00173Q6ZV60 143 aa2.91□□□□□ -1.94
LINC00540-201ENST00000611481 MOB1BQ7L9L4 216 aa2.91□□□□□ -1.94
LINC00540-201ENST00000611481 YIPF7Q8N8F6 280 aa2.91□□□□□ -1.94
LINC00540-201ENST00000611481 OR11H7Q8NGC8 314 aa2.91□□□□□ -1.94
LINC00540-201ENST00000611481 OR4S2Q8NH73 311 aa2.91□□□□□ -1.94
LINC00540-201ENST00000611481 OR1S1Q8NH92 325 aa2.91□□□□□ -1.94
LINC00540-201ENST00000611481 TWIST2Q8WVJ9 160 aa2.91□□□□□ -1.94
LINC00540-201ENST00000611481 MAL2Q969L2 176 aa2.91□□□□□ -1.94
LINC00540-201ENST00000611481 REEP6Q96HR9 211 aa2.91□□□□□ -1.94
LINC00540-201ENST00000611481 METTL26Q96S19 204 aa2.91□□□□□ -1.94
LINC00540-201ENST00000611481 SDHCQ99643 169 aaPredicted RBP2.91□□□□□ -1.94
LINC00540-201ENST00000611481 TMEM70Q9BUB7 260 aa2.91□□□□□ -1.94
LINC00540-201ENST00000611481 MAP1LC3AQ9H492 121 aa2.91□□□□□ -1.94
LINC00540-201ENST00000611481 BCL2L10Q9HD36 194 aa2.91□□□□□ -1.94
LINC00540-201ENST00000611481 CTNNBIP1Q9NSA3 81 aaPredicted RBP2.91□□□□□ -1.94
LINC00540-201ENST00000611481 ERGIC3Q9Y282 383 aa2.91□□□□□ -1.94
LINC00540-201ENST00000611481 ORC6Q9Y5N6 252 aa2.91□□□□□ -1.94
LINC00540-201ENST00000611481 TRAV8-6A0A0B4J262 113 aa2.9□□□□□ -1.95
LINC00540-201ENST00000611481 TRAPPC13A5PLN9 417 aa2.9□□□□□ -1.95
LINC00540-201ENST00000611481 C2orf70A6NJV1 201 aa2.9□□□□□ -1.95
LINC00540-201ENST00000611481 C5orf58C9J3I9 102 aa2.9□□□□□ -1.95
LINC00540-201ENST00000611481 HLA-DRB1P01911 266 aa2.9□□□□□ -1.95
LINC00540-201ENST00000611481 CHTF8P0CG12 524 aa2.9□□□□□ -1.95
LINC00540-201ENST00000611481 ATF1P18846 271 aa2.9□□□□□ -1.95
LINC00540-201ENST00000611481 MYL12AP19105 171 aa2.9□□□□□ -1.95
LINC00540-201ENST00000611481 GABRR1P24046 479 aa2.9□□□□□ -1.95
LINC00540-201ENST00000611481 KRTAP10-4P60372 401 aaPredicted RBP2.9□□□□□ -1.95
LINC00540-201ENST00000611481 GNG3P63215 75 aa2.9□□□□□ -1.95
LINC00540-201ENST00000611481 CXCL6P80162 114 aa2.9□□□□□ -1.95
LINC00540-201ENST00000611481 ZNF816Q0VGE8 651 aaPredicted RBP2.9□□□□□ -1.95
LINC00540-201ENST00000611481 CDK5R1Q15078 307 aa2.9□□□□□ -1.95
LINC00540-201ENST00000611481 PTGES3Q15185 160 aaKnown RBP2.9□□□□□ -1.95
LINC00540-201ENST00000611481 KLHL12Q53G59 568 aa2.9□□□□□ -1.95
LINC00540-201ENST00000611481 UNQ5815/PRO19632Q6UWF5 114 aa2.9□□□□□ -1.95
LINC00540-201ENST00000611481 ZNF493Q6ZR52 646 aa2.9□□□□□ -1.95
LINC00540-201ENST00000611481 FAM231DQ6ZW35 169 aa2.9□□□□□ -1.95
LINC00540-201ENST00000611481 HSD17B13Q7Z5P4 300 aaPredicted RBP2.9□□□□□ -1.95
LINC00540-201ENST00000611481 ANGPTL5Q86XS5 388 aa2.9□□□□□ -1.95
LINC00540-201ENST00000611481 LGI3Q8N145 548 aa2.9□□□□□ -1.95
LINC00540-201ENST00000611481 TCTEX1D1Q8N7M0 179 aa2.9□□□□□ -1.95
LINC00540-201ENST00000611481 GATD1Q8NB37 220 aa2.9□□□□□ -1.95
LINC00540-201ENST00000611481 PXT1Q8NFP0 134 aa2.9□□□□□ -1.95
LINC00540-201ENST00000611481 GPR32P1Q8NGA4 272 aa2.9□□□□□ -1.95
LINC00540-201ENST00000611481 OR8B12Q8NGG6 310 aa2.9□□□□□ -1.95
LINC00540-201ENST00000611481 OR10X1Q8NGY0 326 aa2.9□□□□□ -1.95
LINC00540-201ENST00000611481 DTD1Q8TEA8 209 aa2.9□□□□□ -1.95
LINC00540-201ENST00000611481 ASB13Q8WXK3 278 aa2.9□□□□□ -1.95
LINC00540-201ENST00000611481 Q96M85 177 aa2.9□□□□□ -1.95
LINC00540-201ENST00000611481 FAM103A1Q9BTL3 118 aaKnown RBP2.9□□□□□ -1.95
LINC00540-201ENST00000611481 FAAP24Q9BTP7 215 aa2.9□□□□□ -1.95
LINC00540-201ENST00000611481 PARP12Q9H0J9 701 aaKnown RBP2.9□□□□□ -1.95
LINC00540-201ENST00000611481 CST11Q9H112 138 aa2.9□□□□□ -1.95
LINC00540-201ENST00000611481 MS4A6AQ9H2W1 248 aa2.9□□□□□ -1.95
LINC00540-201ENST00000611481 CCL28Q9NRJ3 127 aa2.9□□□□□ -1.95
LINC00540-201ENST00000611481 TRAV27A0A087WT01 109 aa2.89□□□□□ -1.95
LINC00540-201ENST00000611481 PEX7O00628 323 aa2.89□□□□□ -1.95
LINC00540-201ENST00000611481 PSPHP1O15172 72 aa2.89□□□□□ -1.95
LINC00540-201ENST00000611481 GATA2P23769 480 aaPredicted RBP2.89□□□□□ -1.95
LINC00540-201ENST00000611481 NPY1RP25929 384 aa2.89□□□□□ -1.95
LINC00540-201ENST00000611481 RPL12P30050 165 aaKnown RBP2.89□□□□□ -1.95
LINC00540-201ENST00000611481 PYCR1P32322 319 aa2.89□□□□□ -1.95
LINC00540-201ENST00000611481 S100A3P33764 101 aa2.89□□□□□ -1.95
LINC00540-201ENST00000611481 SULT1A1P50225 295 aa2.89□□□□□ -1.95
LINC00540-201ENST00000611481 SULT1A2P50226 295 aa2.89□□□□□ -1.95
LINC00540-201ENST00000611481 ZNF138P52744 262 aa2.89□□□□□ -1.95
LINC00540-201ENST00000611481 TAS2R46P59540 309 aa2.89□□□□□ -1.95
LINC00540-201ENST00000611481 HERVK_113P61574 105 aa2.89□□□□□ -1.95
LINC00540-201ENST00000611481 HBG1P69891 147 aa2.89□□□□□ -1.95
LINC00540-201ENST00000611481 HBG2P69892 147 aa2.89□□□□□ -1.95
LINC00540-201ENST00000611481 TMEM267Q0VDI3 215 aaPredicted RBP2.89□□□□□ -1.95
LINC00540-201ENST00000611481 RGNQ15493 299 aa2.89□□□□□ -1.95
LINC00540-201ENST00000611481 LTC4SQ16873 150 aa2.89□□□□□ -1.95
LINC00540-201ENST00000611481 HACD4Q5VWC8 232 aa2.89□□□□□ -1.95
LINC00540-201ENST00000611481 NIT1Q86X76 327 aa2.89□□□□□ -1.95
LINC00540-201ENST00000611481 FAM210BQ96KR6 192 aa2.89□□□□□ -1.95
LINC00540-201ENST00000611481 CEP19Q96LK0 163 aa2.89□□□□□ -1.95
LINC00540-201ENST00000611481 SLC25A39Q9BZJ4 359 aaPredicted RBP2.89□□□□□ -1.95
LINC00540-201ENST00000611481 C6orf62Q9GZU0 229 aaPredicted RBP2.89□□□□□ -1.95
LINC00540-201ENST00000611481 PSG11Q9UQ72 335 aa2.89□□□□□ -1.95
LINC00540-201ENST00000611481 NUBP2Q9Y5Y2 271 aa2.89□□□□□ -1.95
LINC00540-201ENST00000611481 A0A1B0GW64 132 aa2.88□□□□□ -1.95
LINC00540-201ENST00000611481 RBFOX3A6NFN3 312 aa2.88□□□□□ -1.95
LINC00540-201ENST00000611481 NDUFS5O43920 106 aa2.88□□□□□ -1.95
LINC00540-201ENST00000611481 SERF1AO75920 110 aa2.88□□□□□ -1.95
LINC00540-201ENST00000611481 IGLV2-23P01705 113 aa2.88□□□□□ -1.95
LINC00540-201ENST00000611481 HTN3P15516 51 aa2.88□□□□□ -1.95
LINC00540-201ENST00000611481 AKR1C4P17516 323 aa2.88□□□□□ -1.95
LINC00540-201ENST00000611481 CBLN1P23435 193 aa2.88□□□□□ -1.95
LINC00540-201ENST00000611481 RCVRNP35243 200 aa2.88□□□□□ -1.95
LINC00540-201ENST00000611481 SSTR5P35346 364 aa2.88□□□□□ -1.95
LINC00540-201ENST00000611481 RPS27P42677 84 aaKnown RBP2.88□□□□□ -1.95
LINC00540-201ENST00000611481 PSMB2P49721 201 aa2.88□□□□□ -1.95
LINC00540-201ENST00000611481 NAA20P61599 178 aa2.88□□□□□ -1.95
LINC00540-201ENST00000611481 KRR1Q13601 381 aaKnown RBP2.88□□□□□ -1.95
LINC00540-201ENST00000611481 OR2F1Q13607 317 aa2.88□□□□□ -1.95
LINC00540-201ENST00000611481 LCE1CQ5T751 118 aa2.88□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms