RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, human

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHKBP1-223	ENST00000600552	FAM78B	Q5VT40	261 aa		12.59	□□□□□ -0.39
SHKBP1-223	ENST00000600552	ZNF705A	Q6ZN79	300 aa	Predicted RBP	12.59	□□□□□ -0.39
SHKBP1-223	ENST00000600552	C16orf92	Q96LL3	132 aa		12.59	□□□□□ -0.39
SHKBP1-223	ENST00000600552	RFNG	Q9Y644	331 aa		12.59	□□□□□ -0.39
SHKBP1-223	ENST00000600552	HECTD4	Q9Y4D8	3996 aa		12.59	□□□□□ -0.39
SHKBP1-223	ENST00000600552	HERC2	O95714	4834 aa		12.58	□□□□□ -0.4
SHKBP1-223	ENST00000600552	WRB	O00258	174 aa		12.58	□□□□□ -0.4
SHKBP1-223	ENST00000600552	HOXB5	P09067	269 aa		12.58	□□□□□ -0.4
SHKBP1-223	ENST00000600552	ATP5I	P56385	69 aa	Predicted RBP	12.58	□□□□□ -0.4
SHKBP1-223	ENST00000600552	PSG9	Q00887	426 aa		12.58	□□□□□ -0.4
SHKBP1-223	ENST00000600552	TOMM5	Q8N4H5	51 aa		12.58	□□□□□ -0.4
SHKBP1-223	ENST00000600552	RSG1	Q9BU20	258 aa		12.58	□□□□□ -0.4
SHKBP1-223	ENST00000600552	SLIRP	Q9GZT3	109 aa	Known RBP	12.58	□□□□□ -0.4
SHKBP1-223	ENST00000600552	GOLT1B	Q9Y3E0	138 aa		12.58	□□□□□ -0.4
SHKBP1-223	ENST00000600552	IGLV2-18	A0A075B6J9	118 aa		12.57	□□□□□ -0.4
SHKBP1-223	ENST00000600552	ZNF705F	A8MVS1	300 aa	Predicted RBP	12.57	□□□□□ -0.4
SHKBP1-223	ENST00000600552	MED6	O75586	246 aa		12.57	□□□□□ -0.4
SHKBP1-223	ENST00000600552	ZNF705D	P0CH99	300 aa	Predicted RBP	12.57	□□□□□ -0.4
SHKBP1-223	ENST00000600552	ZNF705B	P0CI00	300 aa	Predicted RBP	12.57	□□□□□ -0.4
SHKBP1-223	ENST00000600552	ORM2	P19652	201 aa		12.57	□□□□□ -0.4
SHKBP1-223	ENST00000600552	GATA2	P23769	480 aa	Predicted RBP	12.57	□□□□□ -0.4
SHKBP1-223	ENST00000600552	C1orf194	Q5T5A4	169 aa		12.57	□□□□□ -0.4
SHKBP1-223	ENST00000600552	FAM222A	Q5U5X8	452 aa		12.57	□□□□□ -0.4
SHKBP1-223	ENST00000600552	C20orf173	Q96LM9	149 aa		12.57	□□□□□ -0.4
SHKBP1-223	ENST00000600552	NEU1	Q99519	415 aa		12.57	□□□□□ -0.4
SHKBP1-223	ENST00000600552	TRGV9	Q99603	122 aa		12.57	□□□□□ -0.4
SHKBP1-223	ENST00000600552	TMEM208	Q9BTX3	173 aa		12.57	□□□□□ -0.4
SHKBP1-223	ENST00000600552	TMEM189	A5PLL7	270 aa		12.56	□□□□□ -0.4
SHKBP1-223	ENST00000600552	SMIM9	A6NGZ8	99 aa		12.56	□□□□□ -0.4
SHKBP1-223	ENST00000600552		H3BMQ9	156 aa		12.56	□□□□□ -0.4
SHKBP1-223	ENST00000600552	ISLR	O14498	428 aa		12.56	□□□□□ -0.4
SHKBP1-223	ENST00000600552	SOCS3	O14543	225 aa		12.56	□□□□□ -0.4
SHKBP1-223	ENST00000600552	PITX3	O75364	302 aa		12.56	□□□□□ -0.4
SHKBP1-223	ENST00000600552	IFNA21	P01568	189 aa		12.56	□□□□□ -0.4
SHKBP1-223	ENST00000600552	HBE1	P02100	147 aa		12.56	□□□□□ -0.4
SHKBP1-223	ENST00000600552	GALR1	P47211	349 aa		12.56	□□□□□ -0.4
SHKBP1-223	ENST00000600552	FGL1	Q08830	312 aa		12.56	□□□□□ -0.4
SHKBP1-223	ENST00000600552	SPANXN5	Q5MJ07	72 aa		12.56	□□□□□ -0.4
SHKBP1-223	ENST00000600552	ZNF709	Q8N972	641 aa		12.56	□□□□□ -0.4
SHKBP1-223	ENST00000600552	SOST	Q9BQB4	213 aa		12.56	□□□□□ -0.4
SHKBP1-223	ENST00000600552	NIPSNAP3B	Q9BS92	247 aa		12.56	□□□□□ -0.4
SHKBP1-223	ENST00000600552	SLC25A32	Q9H2D1	315 aa		12.56	□□□□□ -0.4
SHKBP1-223	ENST00000600552	RPRM	Q9NS64	109 aa		12.56	□□□□□ -0.4
SHKBP1-223	ENST00000600552	IGKV1OR2-108	A0A075B7D4	117 aa		12.55	□□□□□ -0.4
SHKBP1-223	ENST00000600552	LOC102723971	A0A1B0GUV8	181 aa		12.55	□□□□□ -0.4
SHKBP1-223	ENST00000600552	SMCO3	A2RU48	225 aa		12.55	□□□□□ -0.4
SHKBP1-223	ENST00000600552		H3BP45	60 aa		12.55	□□□□□ -0.4
SHKBP1-223	ENST00000600552	AP3S2	P59780	193 aa		12.55	□□□□□ -0.4
SHKBP1-223	ENST00000600552	RPP30	P78346	268 aa	Known RBP	12.55	□□□□□ -0.4
SHKBP1-223	ENST00000600552	AKR1C1	Q04828	323 aa		12.55	□□□□□ -0.4
SHKBP1-223	ENST00000600552	TMEM128	Q5BJH2	165 aa		12.55	□□□□□ -0.4
SHKBP1-223	ENST00000600552	GGNBP1	Q5YKI7	109 aa		12.55	□□□□□ -0.4
SHKBP1-223	ENST00000600552	IGFL4	Q6B9Z1	124 aa		12.55	□□□□□ -0.4
SHKBP1-223	ENST00000600552	LINC00336	Q6ZUF6	198 aa		12.55	□□□□□ -0.4
SHKBP1-223	ENST00000600552	OR1B1	Q8NGR6	318 aa		12.55	□□□□□ -0.4
SHKBP1-223	ENST00000600552	BCL7B	Q9BQE9	202 aa		12.55	□□□□□ -0.4
SHKBP1-223	ENST00000600552	DOK5	Q9P104	306 aa		12.55	□□□□□ -0.4
SHKBP1-223	ENST00000600552	DKK2	Q9UBU2	259 aa		12.55	□□□□□ -0.4
SHKBP1-223	ENST00000600552	PIGBOS1	A0A0B4J2F0	54 aa		12.54	□□□□□ -0.4
SHKBP1-223	ENST00000600552		A0A0J9YX75	114 aa		12.54	□□□□□ -0.4
SHKBP1-223	ENST00000600552	DUXB	A0A1W2PPF3	345 aa		12.54	□□□□□ -0.4
SHKBP1-223	ENST00000600552	CCDC160	A6NGH7	325 aa		12.54	□□□□□ -0.4
SHKBP1-223	ENST00000600552	PRSS29P	A6NIE9	313 aa		12.54	□□□□□ -0.4
SHKBP1-223	ENST00000600552	SYNGR2	O43760	224 aa		12.54	□□□□□ -0.4
SHKBP1-223	ENST00000600552	PPP1R1A	Q13522	171 aa		12.54	□□□□□ -0.4
SHKBP1-223	ENST00000600552	ZNF79	Q15937	498 aa		12.54	□□□□□ -0.4
SHKBP1-223	ENST00000600552	C1orf158	Q8N1D5	194 aa		12.54	□□□□□ -0.4
SHKBP1-223	ENST00000600552	THAP8	Q8NA92	274 aa		12.54	□□□□□ -0.4
SHKBP1-223	ENST00000600552	BPIFC	Q8NFQ6	507 aa		12.54	□□□□□ -0.4
SHKBP1-223	ENST00000600552	YTHDF2	Q9Y5A9	579 aa	Known RBP	12.54	□□□□□ -0.4
SHKBP1-223	ENST00000600552	ZNF98	A6NK75	572 aa		12.53	□□□□□ -0.4
SHKBP1-223	ENST00000600552	SFT2D2	O95562	160 aa		12.53	□□□□□ -0.4
SHKBP1-223	ENST00000600552	PRM2	P04554	102 aa		12.53	□□□□□ -0.4
SHKBP1-223	ENST00000600552	RRN3P1	Q2M238	152 aa		12.53	□□□□□ -0.4
SHKBP1-223	ENST00000600552	SPATA31B1P	Q5VZV4	182 aa		12.53	□□□□□ -0.4
SHKBP1-223	ENST00000600552	TMEM182	Q6ZP80	229 aa	Predicted RBP	12.53	□□□□□ -0.4
SHKBP1-223	ENST00000600552	CIB3	Q96Q77	187 aa	Predicted RBP	12.53	□□□□□ -0.4
SHKBP1-223	ENST00000600552	TMEM147	Q9BVK8	224 aa		12.53	□□□□□ -0.4
SHKBP1-223	ENST00000600552	PRB4	P10163	310 aa	Predicted RBP	12.52	□□□□□ -0.41
SHKBP1-223	ENST00000600552	MEOX2	P50222	304 aa		12.52	□□□□□ -0.41
SHKBP1-223	ENST00000600552	PAX9	P55771	341 aa		12.52	□□□□□ -0.41
SHKBP1-223	ENST00000600552	DAD1	P61803	113 aa		12.52	□□□□□ -0.41
SHKBP1-223	ENST00000600552	TRIM63	Q969Q1	353 aa		12.52	□□□□□ -0.41
SHKBP1-223	ENST00000600552	STRAP	Q9Y3F4	350 aa	Known RBP	12.52	□□□□□ -0.41
SHKBP1-223	ENST00000600552	TMED3	Q9Y3Q3	217 aa		12.52	□□□□□ -0.41
SHKBP1-223	ENST00000600552	ZNF705G	A8MUZ8	300 aa	Predicted RBP	12.51	□□□□□ -0.41
SHKBP1-223	ENST00000600552	RTL8C	O15255	209 aa		12.51	□□□□□ -0.41
SHKBP1-223	ENST00000600552	CFD	P00746	253 aa	Predicted RBP	12.51	□□□□□ -0.41
SHKBP1-223	ENST00000600552	UNQ5830/PRO19650/PRO19816	Q6UY13	95 aa		12.51	□□□□□ -0.41
SHKBP1-223	ENST00000600552	RNF182	Q8N6D2	247 aa		12.51	□□□□□ -0.41
SHKBP1-223	ENST00000600552	CLUHP3	Q96NS8	147 aa		12.51	□□□□□ -0.41
SHKBP1-223	ENST00000600552	KIAA1109	Q2LD37	5005 aa		12.51	□□□□□ -0.41
SHKBP1-223	ENST00000600552	DNAH17	Q9UFH2	4485 aa		12.51	□□□□□ -0.41
SHKBP1-223	ENST00000600552	TEX48	A0A1B0GUV7	120 aa		12.5	□□□□□ -0.41
SHKBP1-223	ENST00000600552		M0R2Z0	102 aa		12.5	□□□□□ -0.41
SHKBP1-223	ENST00000600552	SLC25A6	P12236	298 aa		12.5	□□□□□ -0.41
SHKBP1-223	ENST00000600552	S100A5	P33763	92 aa		12.5	□□□□□ -0.41
SHKBP1-223	ENST00000600552	SPINK13	Q1W4C9	94 aa		12.5	□□□□□ -0.41
SHKBP1-223	ENST00000600552	SAMD13	Q5VXD3	122 aa		12.5	□□□□□ -0.41
SHKBP1-223	ENST00000600552	TMEM88	Q6PEY1	159 aa		12.5	□□□□□ -0.41

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