RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 HOXB5P09067 269 aa7.06□□□□□ -1.28
VRK3-216ENST00000599342 S100A7P31151 101 aa7.06□□□□□ -1.28
VRK3-216ENST00000599342 GALR1P47211 349 aa7.06□□□□□ -1.28
VRK3-216ENST00000599342 INPP1P49441 399 aa7.06□□□□□ -1.28
VRK3-216ENST00000599342 MEOX2P50222 304 aa7.06□□□□□ -1.28
VRK3-216ENST00000599342 FXYD7P58549 80 aa7.06□□□□□ -1.28
VRK3-216ENST00000599342 AKR1C1Q04828 323 aa7.06□□□□□ -1.28
VRK3-216ENST00000599342 PPP1R1AQ13522 171 aa7.06□□□□□ -1.28
VRK3-216ENST00000599342 GDF5OSQ5U4N7 250 aa7.06□□□□□ -1.28
VRK3-216ENST00000599342 SPATA31B1PQ5VZV4 182 aa7.06□□□□□ -1.28
VRK3-216ENST00000599342 GGNBP1Q5YKI7 109 aa7.06□□□□□ -1.28
VRK3-216ENST00000599342 EBLN2Q6P2I7 272 aa7.06□□□□□ -1.28
VRK3-216ENST00000599342 ZNF767PQ75MW2 155 aa7.06□□□□□ -1.28
VRK3-216ENST00000599342 OR4B1Q8NGF8 309 aa7.06□□□□□ -1.28
VRK3-216ENST00000599342 MAGT1Q9H0U3 335 aa7.06□□□□□ -1.28
VRK3-216ENST00000599342 SMIM9A6NGZ8 99 aa7.05□□□□□ -1.28
VRK3-216ENST00000599342 ISLRO14498 428 aa7.05□□□□□ -1.28
VRK3-216ENST00000599342 SOCS3O14543 225 aa7.05□□□□□ -1.28
VRK3-216ENST00000599342 AMBPP02760 352 aa7.05□□□□□ -1.28
VRK3-216ENST00000599342 SPART-AS1P0CW21 52 aa7.05□□□□□ -1.28
VRK3-216ENST00000599342 EMP1P54849 157 aa7.05□□□□□ -1.28
VRK3-216ENST00000599342 DEFB1P60022 68 aa7.05□□□□□ -1.28
VRK3-216ENST00000599342 ZNF79Q15937 498 aa7.05□□□□□ -1.28
VRK3-216ENST00000599342 C12orf74Q32Q52 190 aa7.05□□□□□ -1.28
VRK3-216ENST00000599342 SPANXN5Q5MJ07 72 aa7.05□□□□□ -1.28
VRK3-216ENST00000599342 SPANXN2Q5MJ10 180 aa7.05□□□□□ -1.28
VRK3-216ENST00000599342 ZNF705AQ6ZN79 300 aaPredicted RBP7.05□□□□□ -1.28
VRK3-216ENST00000599342 THAP8Q8NA92 274 aa7.05□□□□□ -1.28
VRK3-216ENST00000599342 BPIFCQ8NFQ6 507 aa7.05□□□□□ -1.28
VRK3-216ENST00000599342 C16orf92Q96LL3 132 aa7.05□□□□□ -1.28
VRK3-216ENST00000599342 NEU1Q99519 415 aa7.05□□□□□ -1.28
VRK3-216ENST00000599342 NDUFAF3Q9BU61 184 aa7.05□□□□□ -1.28
VRK3-216ENST00000599342 SLC25A22Q9H936 323 aa7.05□□□□□ -1.28
VRK3-216ENST00000599342 RPRMQ9NS64 109 aa7.05□□□□□ -1.28
VRK3-216ENST00000599342 IGKV1OR2-108A0A075B7D4 117 aa7.04□□□□□ -1.28
VRK3-216ENST00000599342 TEX48A0A1B0GUV7 120 aa7.04□□□□□ -1.28
VRK3-216ENST00000599342 ZNF705FA8MVS1 300 aaPredicted RBP7.04□□□□□ -1.28
VRK3-216ENST00000599342 H3BP45 60 aa7.04□□□□□ -1.28
VRK3-216ENST00000599342 ZNF705DP0CH99 300 aaPredicted RBP7.04□□□□□ -1.28
VRK3-216ENST00000599342 ZNF705BP0CI00 300 aaPredicted RBP7.04□□□□□ -1.28
VRK3-216ENST00000599342 P0DMU3 169 aa7.04□□□□□ -1.28
VRK3-216ENST00000599342 FAM231AP0DMU4 169 aa7.04□□□□□ -1.28
VRK3-216ENST00000599342 FAM231CP0DMU5 169 aa7.04□□□□□ -1.28
VRK3-216ENST00000599342 ORM2P19652 201 aa7.04□□□□□ -1.28
VRK3-216ENST00000599342 UBE2MP61081 183 aaKnown RBP7.04□□□□□ -1.28
VRK3-216ENST00000599342 PSG9Q00887 426 aa7.04□□□□□ -1.28
VRK3-216ENST00000599342 ZNF709Q8N972 641 aa7.04□□□□□ -1.28
VRK3-216ENST00000599342 CLUHP3Q96NS8 147 aa7.04□□□□□ -1.28
VRK3-216ENST00000599342 C7orf50Q9BRJ6 194 aaKnown RBP7.04□□□□□ -1.28
VRK3-216ENST00000599342 TMEM147Q9BVK8 224 aa7.04□□□□□ -1.28
VRK3-216ENST00000599342 SLC35B3Q9H1N7 401 aa7.04□□□□□ -1.28
VRK3-216ENST00000599342 SLC25A32Q9H2D1 315 aa7.04□□□□□ -1.28
VRK3-216ENST00000599342 SLC45A2Q9UMX9 530 aa7.04□□□□□ -1.28
VRK3-216ENST00000599342 GOLT1BQ9Y3E0 138 aa7.04□□□□□ -1.28
VRK3-216ENST00000599342 STRAPQ9Y3F4 350 aaKnown RBP7.04□□□□□ -1.28
VRK3-216ENST00000599342 RFNGQ9Y644 331 aa7.04□□□□□ -1.28
VRK3-216ENST00000599342 SMCO3A2RU48 225 aa7.03□□□□□ -1.28
VRK3-216ENST00000599342 ZNF98A6NK75 572 aa7.03□□□□□ -1.28
VRK3-216ENST00000599342 PRSS46E5RG02 174 aa7.03□□□□□ -1.28
VRK3-216ENST00000599342 F6UB75 175 aa7.03□□□□□ -1.28
VRK3-216ENST00000599342 HBE1P02100 147 aa7.03□□□□□ -1.28
VRK3-216ENST00000599342 PAX9P55771 341 aa7.03□□□□□ -1.28
VRK3-216ENST00000599342 FAM78BQ5VT40 261 aa7.03□□□□□ -1.28
VRK3-216ENST00000599342 TRIQKQ629K1 86 aa7.03□□□□□ -1.28
VRK3-216ENST00000599342 ACOT7LQ6ZUV0 252 aa7.03□□□□□ -1.28
VRK3-216ENST00000599342 CCDC190Q86UF4 302 aa7.03□□□□□ -1.28
VRK3-216ENST00000599342 OR1B1Q8NGR6 318 aa7.03□□□□□ -1.28
VRK3-216ENST00000599342 GPR82Q96P67 336 aa7.03□□□□□ -1.28
VRK3-216ENST00000599342 DOK5Q9P104 306 aa7.03□□□□□ -1.28
VRK3-216ENST00000599342 FRAS1Q86XX4 4008 aa7.03□□□□□ -1.28
VRK3-216ENST00000599342 A0A0J9YX75 114 aa7.02□□□□□ -1.29
VRK3-216ENST00000599342 NAP1L6A6NFF2 107 aa7.02□□□□□ -1.29
VRK3-216ENST00000599342 IFNA21P01568 189 aa7.02□□□□□ -1.29
VRK3-216ENST00000599342 GATA2P23769 480 aaPredicted RBP7.02□□□□□ -1.29
VRK3-216ENST00000599342 RAP2BP61225 183 aa7.02□□□□□ -1.29
VRK3-216ENST00000599342 GSG1LQ6UXU4 331 aa7.02□□□□□ -1.29
VRK3-216ENST00000599342 OR4D5Q8NGN0 318 aa7.02□□□□□ -1.29
VRK3-216ENST00000599342 NIPSNAP3BQ9BS92 247 aa7.02□□□□□ -1.29
VRK3-216ENST00000599342 TMEM208Q9BTX3 173 aa7.02□□□□□ -1.29
VRK3-216ENST00000599342 RSG1Q9BU20 258 aa7.02□□□□□ -1.29
VRK3-216ENST00000599342 SRRQ9GZT4 340 aa7.02□□□□□ -1.29
VRK3-216ENST00000599342 PSENENQ9NZ42 101 aa7.02□□□□□ -1.29
VRK3-216ENST00000599342 VPS13DQ5THJ4 4388 aa7.01□□□□□ -1.29
VRK3-216ENST00000599342 C9orf170A2RU37 121 aa7.01□□□□□ -1.29
VRK3-216ENST00000599342 SSSCA1O60232 199 aa7.01□□□□□ -1.29
VRK3-216ENST00000599342 ADAP1O75689 374 aa7.01□□□□□ -1.29
VRK3-216ENST00000599342 NDUFB6O95139 128 aa7.01□□□□□ -1.29
VRK3-216ENST00000599342 IL5P05113 134 aa7.01□□□□□ -1.29
VRK3-216ENST00000599342 POLR2GP62487 172 aaKnown RBP eCLIP7.01□□□□□ -1.29
VRK3-216ENST00000599342 ID3Q02535 119 aa7.01□□□□□ -1.29
VRK3-216ENST00000599342 FGL1Q08830 312 aa7.01□□□□□ -1.29
VRK3-216ENST00000599342 RRN3P1Q2M238 152 aa7.01□□□□□ -1.29
VRK3-216ENST00000599342 FAM222AQ5U5X8 452 aa7.01□□□□□ -1.29
VRK3-216ENST00000599342 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa7.01□□□□□ -1.29
VRK3-216ENST00000599342 CYP2G1PQ6ZSU1 146 aa7.01□□□□□ -1.29
VRK3-216ENST00000599342 LINC00336Q6ZUF6 198 aa7.01□□□□□ -1.29
VRK3-216ENST00000599342 TMEM144Q7Z5S9 345 aa7.01□□□□□ -1.29
VRK3-216ENST00000599342 S100A7AQ86SG5 101 aa7.01□□□□□ -1.29
VRK3-216ENST00000599342 UBE2DNLQ8IWF7 75 aa7.01□□□□□ -1.29
VRK3-216ENST00000599342 POM121L12Q8N7R1 296 aa7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms