RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 ZNF714Q96N38 554 aa12.34□□□□□ -0.43
UPF1-204ENST00000596842 LHBP01229 141 aa12.34□□□□□ -0.43
UPF1-204ENST00000596842 SPACA3Q8IXA5 215 aa12.34□□□□□ -0.43
UPF1-204ENST00000596842 DAZAP1Q96EP5 407 aaKnown RBP12.34□□□□□ -0.43
UPF1-204ENST00000596842 RITA1Q96K30 269 aa12.34□□□□□ -0.43
UPF1-204ENST00000596842 C7orf71A4D174 169 aa12.34□□□□□ -0.43
UPF1-204ENST00000596842 C2orf83Q53S99 150 aa12.34□□□□□ -0.43
UPF1-204ENST00000596842 RUSC1-AS1Q66K80 236 aa12.33□□□□□ -0.44
UPF1-204ENST00000596842 LYPD2Q6UXB3 125 aa12.33□□□□□ -0.44
UPF1-204ENST00000596842 CHODLQ9H9P2 273 aa12.33□□□□□ -0.44
UPF1-204ENST00000596842 TNFRSF19Q9NS68 423 aa12.33□□□□□ -0.44
UPF1-204ENST00000596842 CEACAM3P40198 252 aa12.33□□□□□ -0.44
UPF1-204ENST00000596842 GDF5OSQ5U4N7 250 aa12.33□□□□□ -0.44
UPF1-204ENST00000596842 ZNF436-AS1Q8NC38 126 aaPredicted RBP12.33□□□□□ -0.44
UPF1-204ENST00000596842 FAM167A-AS1Q96KT0 104 aa12.33□□□□□ -0.44
UPF1-204ENST00000596842 F11RQ9Y624 299 aaKnown RBP12.33□□□□□ -0.44
UPF1-204ENST00000596842 LRBAP50851 2863 aa12.33□□□□□ -0.44
UPF1-204ENST00000596842 OR4C46A6NHA9 309 aa12.33□□□□□ -0.44
UPF1-204ENST00000596842 FAM87AP0C7U9 286 aa12.33□□□□□ -0.44
UPF1-204ENST00000596842 CD40P25942 277 aa12.33□□□□□ -0.44
UPF1-204ENST00000596842 OR10J3Q5JRS4 329 aa12.33□□□□□ -0.44
UPF1-204ENST00000596842 MTURNQ8N3F0 131 aa12.33□□□□□ -0.44
UPF1-204ENST00000596842 PEF1Q9UBV8 284 aaKnown RBP12.33□□□□□ -0.44
UPF1-204ENST00000596842 LY96Q9Y6Y9 160 aa12.33□□□□□ -0.44
UPF1-204ENST00000596842 S4R3C0 116 aa12.33□□□□□ -0.44
UPF1-204ENST00000596842 ARHGAP32A7KAX9 2087 aa12.32□□□□□ -0.44
UPF1-204ENST00000596842 K7EM74 188 aa12.32□□□□□ -0.44
UPF1-204ENST00000596842 LYZP61626 148 aa12.32□□□□□ -0.44
UPF1-204ENST00000596842 PATE2Q6UY27 113 aa12.32□□□□□ -0.44
UPF1-204ENST00000596842 PERPQ96FX8 193 aa12.32□□□□□ -0.44
UPF1-204ENST00000596842 ZNF257Q9Y2Q1 563 aa12.32□□□□□ -0.44
UPF1-204ENST00000596842 H0YJW9 148 aa12.32□□□□□ -0.44
UPF1-204ENST00000596842 J3QR89 54 aa12.32□□□□□ -0.44
UPF1-204ENST00000596842 RAB9AP51151 201 aa12.32□□□□□ -0.44
UPF1-204ENST00000596842 PLGLAQ15195 96 aa12.32□□□□□ -0.44
UPF1-204ENST00000596842 PLA2G2CQ5R387 149 aa12.32□□□□□ -0.44
UPF1-204ENST00000596842 C12orf54Q6X4T0 127 aa12.32□□□□□ -0.44
UPF1-204ENST00000596842 FER1L6-AS1Q8NA97 138 aa12.32□□□□□ -0.44
UPF1-204ENST00000596842 IGFBPL1Q8WX77 278 aa12.32□□□□□ -0.44
UPF1-204ENST00000596842 AZU1P20160 251 aa12.32□□□□□ -0.44
UPF1-204ENST00000596842 TMEM177Q53S58 311 aa12.32□□□□□ -0.44
UPF1-204ENST00000596842 TMEM200BQ69YZ2 307 aa12.32□□□□□ -0.44
UPF1-204ENST00000596842 BPIFA4PQ86YQ2 179 aa12.32□□□□□ -0.44
UPF1-204ENST00000596842 IGF2BP2-AS1Q96M15 143 aa12.32□□□□□ -0.44
UPF1-204ENST00000596842 FAM215AQ9Y5M1 114 aa12.32□□□□□ -0.44
UPF1-204ENST00000596842 DSCAML1Q8TD84 2053 aa12.32□□□□□ -0.44
UPF1-204ENST00000596842 SMIM27A0A1W2PRY6 76 aa12.31□□□□□ -0.44
UPF1-204ENST00000596842 SUB1P53999 127 aaKnown RBP eCLIP12.31□□□□□ -0.449e-7■■■□□ 17.7
UPF1-204ENST00000596842 ZNF329Q86UD4 541 aa12.31□□□□□ -0.44
UPF1-204ENST00000596842 Q8N976 141 aa12.31□□□□□ -0.44
UPF1-204ENST00000596842 SIGMAR1Q99720 223 aa12.31□□□□□ -0.44
UPF1-204ENST00000596842 CNTFRP26992 372 aa12.31□□□□□ -0.44
UPF1-204ENST00000596842 PAX2Q02962 417 aa12.31□□□□□ -0.44
UPF1-204ENST00000596842 OR4C13Q8NGP0 309 aa12.31□□□□□ -0.44
UPF1-204ENST00000596842 OR1L4Q8NGR5 311 aa12.31□□□□□ -0.44
UPF1-204ENST00000596842 DYNLRB1Q9NP97 96 aa12.31□□□□□ -0.44
UPF1-204ENST00000596842 K7EP13 123 aa12.31□□□□□ -0.44
UPF1-204ENST00000596842 CHEK1O14757 476 aa12.31□□□□□ -0.44
UPF1-204ENST00000596842 COX7A1P24310 79 aa12.31□□□□□ -0.44
UPF1-204ENST00000596842 CR1LQ2VPA4 569 aa12.31□□□□□ -0.44
UPF1-204ENST00000596842 EBLN2Q6P2I7 272 aa12.31□□□□□ -0.44
UPF1-204ENST00000596842 NDUFA4L2Q9NRX3 87 aa12.31□□□□□ -0.44
UPF1-204ENST00000596842 ZZEF1O43149 2961 aa12.31□□□□□ -0.44
UPF1-204ENST00000596842 RBP4P02753 201 aa12.3□□□□□ -0.44
UPF1-204ENST00000596842 HIST1H1EP10412 219 aaKnown RBP12.3□□□□□ -0.44
UPF1-204ENST00000596842 HTR1DP28221 377 aa12.3□□□□□ -0.44
UPF1-204ENST00000596842 CFHR2P36980 270 aa12.3□□□□□ -0.44
UPF1-204ENST00000596842 STXBP6Q8NFX7 210 aa12.3□□□□□ -0.44
UPF1-204ENST00000596842 SVEP1Q4LDE5 3571 aa12.3□□□□□ -0.44
UPF1-204ENST00000596842 IGHV1-69-2A0A0G2JMI3 117 aa12.3□□□□□ -0.44
UPF1-204ENST00000596842 NDUFB3O43676 98 aa12.3□□□□□ -0.44
UPF1-204ENST00000596842 P01737 135 aa12.3□□□□□ -0.44
UPF1-204ENST00000596842 NBEAP1P0C6P0 100 aa12.3□□□□□ -0.44
UPF1-204ENST00000596842 ESDP10768 282 aa12.3□□□□□ -0.44
UPF1-204ENST00000596842 IGLL1P15814 213 aa12.3□□□□□ -0.44
UPF1-204ENST00000596842 LINC00173Q6ZV60 143 aa12.3□□□□□ -0.44
UPF1-204ENST00000596842 OSR1Q8TAX0 266 aaPredicted RBP12.3□□□□□ -0.44
UPF1-204ENST00000596842 RALYQ9UKM9 306 aaKnown RBP12.3□□□□□ -0.44
UPF1-204ENST00000596842 RAI1Q7Z5J4 1906 aaPredicted RBP12.3□□□□□ -0.44
UPF1-204ENST00000596842 TRAV26-1A0A087WT03 109 aa12.3□□□□□ -0.44
UPF1-204ENST00000596842 LYNX1G3V0Z9 82 aa12.3□□□□□ -0.44
UPF1-204ENST00000596842 LYNX1P0DP58 116 aa12.3□□□□□ -0.44
UPF1-204ENST00000596842 TNFRSF1AP19438 455 aa12.3□□□□□ -0.44
UPF1-204ENST00000596842 PRNTQ86SH4 94 aa12.3□□□□□ -0.44
UPF1-204ENST00000596842 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.29□□□□□ -0.44
UPF1-204ENST00000596842 FAM181BA6NEQ2 426 aa12.29□□□□□ -0.44
UPF1-204ENST00000596842 A0A1W2PPI3 338 aa12.29□□□□□ -0.44
UPF1-204ENST00000596842 TCRBV4S1A1TA0A5B7 111 aa12.29□□□□□ -0.44
UPF1-204ENST00000596842 MRPL32Q9BYC8 188 aaKnown RBP12.29□□□□□ -0.44
UPF1-204ENST00000596842 LINC00312Q9Y6C7 94 aa12.29□□□□□ -0.44
UPF1-204ENST00000596842 COL27A1Q8IZC6 1860 aaPredicted RBP12.29□□□□□ -0.44
UPF1-204ENST00000596842 PPIAL4EA0A075B759 164 aa12.29□□□□□ -0.44
UPF1-204ENST00000596842 TRAV9-2A0A087WT02 112 aa12.29□□□□□ -0.44
UPF1-204ENST00000596842 PPIAL4FP0DN26 164 aa12.29□□□□□ -0.44
UPF1-204ENST00000596842 LINC00322Q6ZN03 302 aaPredicted RBP12.29□□□□□ -0.44
UPF1-204ENST00000596842 SPCS1Q9Y6A9 102 aa12.29□□□□□ -0.44
UPF1-204ENST00000596842 COL8A1P27658 744 aa12.28□□□□□ -0.44
UPF1-204ENST00000596842 VMA21Q3ZAQ7 101 aa12.28□□□□□ -0.44
UPF1-204ENST00000596842 Q71RC1 249 aaPredicted RBP12.28□□□□□ -0.44
UPF1-204ENST00000596842 EXOC3-AS1Q8N2X6 119 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms