RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 NUP210LQ5VU65 1888 aa7.97□□□□□ -1.13
LIG3-216ENST00000593099 TXNDC17Q9BRA2 123 aa7.97□□□□□ -1.13
LIG3-216ENST00000593099 TMEM204Q9BSN7 226 aa7.97□□□□□ -1.13
LIG3-216ENST00000593099 FGF23Q9GZV9 251 aaPredicted RBP7.97□□□□□ -1.13
LIG3-216ENST00000593099 LAMTOR2Q9Y2Q5 125 aa7.97□□□□□ -1.13
LIG3-216ENST00000593099 V9GYY9 64 aa7.97□□□□□ -1.13
LIG3-216ENST00000593099 C15orf65H3BRN8 121 aa7.97□□□□□ -1.13
LIG3-216ENST00000593099 CXCL2P19875 107 aa7.97□□□□□ -1.13
LIG3-216ENST00000593099 PAX8Q06710 450 aa7.97□□□□□ -1.13
LIG3-216ENST00000593099 LINC00305Q7Z4B0 112 aa7.97□□□□□ -1.13
LIG3-216ENST00000593099 RARRES2Q99969 163 aa7.97□□□□□ -1.13
LIG3-216ENST00000593099 IGHV3-66A0A0C4DH42 116 aa7.97□□□□□ -1.13
LIG3-216ENST00000593099 MMP23AO75900 390 aa7.97□□□□□ -1.13
LIG3-216ENST00000593099 GCSHP23434 173 aa7.97□□□□□ -1.13
LIG3-216ENST00000593099 ZNF880Q6PDB4 577 aa7.97□□□□□ -1.13
LIG3-216ENST00000593099 C22orf34Q6ZV56 151 aa7.97□□□□□ -1.13
LIG3-216ENST00000593099 LIME1Q9H400 295 aa7.97□□□□□ -1.13
LIG3-216ENST00000593099 NCOA6Q14686 2063 aaPredicted RBP7.97□□□□□ -1.13
LIG3-216ENST00000593099 PGPEP1LA6NFU8 196 aa7.96□□□□□ -1.13
LIG3-216ENST00000593099 CGB1A6NKQ9 187 aa7.96□□□□□ -1.13
LIG3-216ENST00000593099 IGKV1-16P04430 117 aa7.96□□□□□ -1.13
LIG3-216ENST00000593099 ESDP10768 282 aa7.96□□□□□ -1.13
LIG3-216ENST00000593099 PIP4P2Q8N4L2 257 aa7.96□□□□□ -1.13
LIG3-216ENST00000593099 C5orf30Q96GV9 206 aa7.96□□□□□ -1.13
LIG3-216ENST00000593099 TRGC2P03986 189 aa7.96□□□□□ -1.14
LIG3-216ENST00000593099 AMY1AP04745 511 aa7.96□□□□□ -1.14
LIG3-216ENST00000593099 LINC00205P59089 165 aa7.96□□□□□ -1.14
LIG3-216ENST00000593099 C16orf54Q6UWD8 224 aa7.96□□□□□ -1.14
LIG3-216ENST00000593099 ZNF833PQ6ZTB9 187 aa7.96□□□□□ -1.14
LIG3-216ENST00000593099 KLHL30-AS1Q8NEE0 82 aa7.96□□□□□ -1.14
LIG3-216ENST00000593099 OR5A1Q8NGJ0 315 aa7.96□□□□□ -1.14
LIG3-216ENST00000593099 MIEN1Q9BRT3 115 aa7.96□□□□□ -1.14
LIG3-216ENST00000593099 TRAV14DV4A0A0A6YYC5 116 aa7.96□□□□□ -1.14
LIG3-216ENST00000593099 COX6CP09669 75 aa7.96□□□□□ -1.14
LIG3-216ENST00000593099 DEFB112Q30KQ8 113 aa7.96□□□□□ -1.14
LIG3-216ENST00000593099 PRNTQ86SH4 94 aa7.96□□□□□ -1.14
LIG3-216ENST00000593099 GBGT1Q8N5D6 347 aa7.96□□□□□ -1.14
LIG3-216ENST00000593099 OR5AN1Q8NGI8 311 aa7.96□□□□□ -1.14
LIG3-216ENST00000593099 IGHV3OR16-12A0A075B7B8 117 aa7.96□□□□□ -1.14
LIG3-216ENST00000593099 IGKV1-5P01602 117 aa7.96□□□□□ -1.14
LIG3-216ENST00000593099 P01737 135 aa7.96□□□□□ -1.14
LIG3-216ENST00000593099 UBE2V1Q13404 147 aa7.96□□□□□ -1.14
LIG3-216ENST00000593099 SPSB3Q6PJ21 355 aa7.96□□□□□ -1.14
LIG3-216ENST00000593099 SRSF8Q9BRL6 282 aaKnown RBP7.96□□□□□ -1.14
LIG3-216ENST00000593099 NPCDR1Q9BY65 106 aa7.96□□□□□ -1.14
LIG3-216ENST00000593099 PARLQ9H300 379 aa7.96□□□□□ -1.14
LIG3-216ENST00000593099 LOXL1Q08397 574 aaPredicted RBP7.95□□□□□ -1.14
LIG3-216ENST00000593099 C2orf83Q53S99 150 aa7.95□□□□□ -1.14
LIG3-216ENST00000593099 PCNX3Q9H6A9 2034 aa7.95□□□□□ -1.14
LIG3-216ENST00000593099 TRAV3A0A0B4J244 114 aa7.95□□□□□ -1.14
LIG3-216ENST00000593099 H3BTX0 84 aa7.95□□□□□ -1.14
LIG3-216ENST00000593099 CRXO43186 299 aaPredicted RBP7.95□□□□□ -1.14
LIG3-216ENST00000593099 HOXA3O43365 443 aaPredicted RBP7.95□□□□□ -1.14
LIG3-216ENST00000593099 ATP5LO75964 103 aa7.95□□□□□ -1.14
LIG3-216ENST00000593099 RELBQ01201 579 aa7.95□□□□□ -1.14
LIG3-216ENST00000593099 KLF17Q5JT82 389 aaPredicted RBP7.95□□□□□ -1.14
LIG3-216ENST00000593099 MRAPQ8TCY5 172 aa7.95□□□□□ -1.14
LIG3-216ENST00000593099 RNF125Q96EQ8 232 aa7.95□□□□□ -1.14
LIG3-216ENST00000593099 SPINK8P0C7L1 97 aa7.95□□□□□ -1.14
LIG3-216ENST00000593099 HERV-K104P63124 156 aa7.95□□□□□ -1.14
LIG3-216ENST00000593099 HIST1H1AQ02539 215 aaPredicted RBP7.95□□□□□ -1.14
LIG3-216ENST00000593099 PAX2Q02962 417 aa7.95□□□□□ -1.14
LIG3-216ENST00000593099 OCIAD2Q56VL3 154 aa7.95□□□□□ -1.14
LIG3-216ENST00000593099 ZNF462Q96JM2 2506 aa7.94□□□□□ -1.14
LIG3-216ENST00000593099 TRAV8-2A0A0B4J237 113 aa7.94□□□□□ -1.14
LIG3-216ENST00000593099 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP7.94□□□□□ -1.14
LIG3-216ENST00000593099 FGF16O43320 207 aa7.94□□□□□ -1.14
LIG3-216ENST00000593099 SMIM13P0DJ93 91 aa7.94□□□□□ -1.14
LIG3-216ENST00000593099 HOXB4P17483 251 aaPredicted RBP7.94□□□□□ -1.14
LIG3-216ENST00000593099 C2orf68Q2NKX9 166 aa7.94□□□□□ -1.14
LIG3-216ENST00000593099 GCSAMLQ5JQS6 135 aa7.94□□□□□ -1.14
LIG3-216ENST00000593099 C9orf153Q5TBE3 101 aa7.94□□□□□ -1.14
LIG3-216ENST00000593099 HIST2H2BCQ6DN03 193 aa7.94□□□□□ -1.14
LIG3-216ENST00000593099 LCNL1Q6ZST4 164 aa7.94□□□□□ -1.14
LIG3-216ENST00000593099 PRSS3P2Q8NHM4 247 aa7.94□□□□□ -1.14
LIG3-216ENST00000593099 NAT8Q9UHE5 227 aa7.94□□□□□ -1.14
LIG3-216ENST00000593099 F11RQ9Y624 299 aaKnown RBP7.94□□□□□ -1.14
LIG3-216ENST00000593099 SUPT4H1P63272 117 aaKnown RBP7.94□□□□□ -1.14
LIG3-216ENST00000593099 HIVEP3Q5T1R4 2406 aa7.94□□□□□ -1.14
LIG3-216ENST00000593099 FAM223BA6NKX1 122 aa7.94□□□□□ -1.14
LIG3-216ENST00000593099 NDUFC2O95298 119 aa7.94□□□□□ -1.14
LIG3-216ENST00000593099 NBEAP1P0C6P0 100 aa7.94□□□□□ -1.14
LIG3-216ENST00000593099 BCL2P10415 239 aa7.94□□□□□ -1.14
LIG3-216ENST00000593099 RRN3P1Q2M238 152 aa7.94□□□□□ -1.14
LIG3-216ENST00000593099 MST1LQ2TV78 715 aa7.94□□□□□ -1.14
LIG3-216ENST00000593099 BSXQ3C1V8 233 aa7.94□□□□□ -1.14
LIG3-216ENST00000593099 PRSS57Q6UWY2 283 aa7.94□□□□□ -1.14
LIG3-216ENST00000593099 FAM223AQ8IWN6 122 aa7.94□□□□□ -1.14
LIG3-216ENST00000593099 C8orf31Q8N9H6 132 aa7.94□□□□□ -1.14
LIG3-216ENST00000593099 C5orf17Q8NAS9 161 aa7.94□□□□□ -1.14
LIG3-216ENST00000593099 GPR82Q96P67 336 aa7.94□□□□□ -1.14
LIG3-216ENST00000593099 TRBV7-1A0A0A6YYK4 115 aa7.94□□□□□ -1.14
LIG3-216ENST00000593099 SAP30O75446 220 aa7.94□□□□□ -1.14
LIG3-216ENST00000593099 ARL14EPLP0DKL9 152 aa7.94□□□□□ -1.14
LIG3-216ENST00000593099 GAGE5Q13069 117 aa7.94□□□□□ -1.14
LIG3-216ENST00000593099 GAGE6Q13070 117 aa7.94□□□□□ -1.14
LIG3-216ENST00000593099 Q5BKY6 102 aa7.94□□□□□ -1.14
LIG3-216ENST00000593099 NMSQ5H8A3 153 aa7.94□□□□□ -1.14
LIG3-216ENST00000593099 MRPL55Q7Z7F7 128 aaKnown RBP7.94□□□□□ -1.14
LIG3-216ENST00000593099 OR11H6Q8NGC7 330 aa7.94□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms