RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 OR10P1Q8NGE3 313 aa7.7□□□□□ -1.18
LIG3-212ENST00000590181 OR1B1Q8NGR6 318 aa7.7□□□□□ -1.18
LIG3-212ENST00000590181 OR11H2Q8NH07 326 aa7.7□□□□□ -1.18
LIG3-212ENST00000590181 PPP1R14BQ96C90 147 aa7.7□□□□□ -1.18
LIG3-212ENST00000590181 PSENENQ9NZ42 101 aa7.7□□□□□ -1.18
LIG3-212ENST00000590181 IGHV3-66A0A0C4DH42 116 aa7.69□□□□□ -1.18
LIG3-212ENST00000590181 PLA2G10O15496 165 aa7.69□□□□□ -1.18
LIG3-212ENST00000590181 IAPPP10997 89 aa7.69□□□□□ -1.18
LIG3-212ENST00000590181 PVALBP20472 110 aaPredicted RBP7.69□□□□□ -1.18
LIG3-212ENST00000590181 PLP1P60201 277 aa7.69□□□□□ -1.18
LIG3-212ENST00000590181 AKR1C1Q04828 323 aa7.69□□□□□ -1.18
LIG3-212ENST00000590181 IAH1Q2TAA2 248 aaPredicted RBP7.69□□□□□ -1.18
LIG3-212ENST00000590181 PBDC1Q9BVG4 233 aa7.69□□□□□ -1.18
LIG3-212ENST00000590181 MAGT1Q9H0U3 335 aa7.69□□□□□ -1.18
LIG3-212ENST00000590181 C20orf85Q9H1P6 137 aa7.69□□□□□ -1.18
LIG3-212ENST00000590181 MGAT4CQ9UBM8 478 aa7.69□□□□□ -1.18
LIG3-212ENST00000590181 PAIP2BQ9ULR5 123 aaKnown RBP7.69□□□□□ -1.18
LIG3-212ENST00000590181 AGRNO00468 2067 aa7.69□□□□□ -1.18
LIG3-212ENST00000590181 DNAH6Q9C0G6 4158 aa7.69□□□□□ -1.18
LIG3-212ENST00000590181 A0A0J9YWU9 116 aa7.68□□□□□ -1.18
LIG3-212ENST00000590181 FAM240BA0A1B0GVZ2 78 aa7.68□□□□□ -1.18
LIG3-212ENST00000590181 SMIM9A6NGZ8 99 aa7.68□□□□□ -1.18
LIG3-212ENST00000590181 C11orf94C9JXX5 98 aa7.68□□□□□ -1.18
LIG3-212ENST00000590181 DEDDO75618 318 aa7.68□□□□□ -1.18
LIG3-212ENST00000590181 ADAP1O75689 374 aa7.68□□□□□ -1.18
LIG3-212ENST00000590181 ZNF688P0C7X2 276 aa7.68□□□□□ -1.18
LIG3-212ENST00000590181 ANXA7P20073 488 aaKnown RBP7.68□□□□□ -1.18
LIG3-212ENST00000590181 RAP2BP61225 183 aa7.68□□□□□ -1.18
LIG3-212ENST00000590181 LYZP61626 148 aa7.68□□□□□ -1.18
LIG3-212ENST00000590181 POLR2GP62487 172 aaKnown RBP eCLIP7.68□□□□□ -1.18
LIG3-212ENST00000590181 ZNF90Q03938 601 aa7.68□□□□□ -1.18
LIG3-212ENST00000590181 RAB31Q13636 194 aa7.68□□□□□ -1.18
LIG3-212ENST00000590181 PSMG4Q5JS54 123 aa7.68□□□□□ -1.18
LIG3-212ENST00000590181 CEMP1Q6PRD7 247 aaPredicted RBP7.68□□□□□ -1.18
LIG3-212ENST00000590181 TEPPQ6URK8 271 aa7.68□□□□□ -1.18
LIG3-212ENST00000590181 TMEM14EPQ6UXP3 125 aa7.68□□□□□ -1.18
LIG3-212ENST00000590181 FOXI2Q6ZQN5 318 aa7.68□□□□□ -1.18
LIG3-212ENST00000590181 ZNF431Q8TF32 576 aaPredicted RBP7.68□□□□□ -1.18
LIG3-212ENST00000590181 TMEM147Q9BVK8 224 aa7.68□□□□□ -1.18
LIG3-212ENST00000590181 WDR12Q9GZL7 423 aaKnown RBP7.68□□□□□ -1.18
LIG3-212ENST00000590181 BATF3Q9NR55 127 aa7.68□□□□□ -1.18
LIG3-212ENST00000590181 FLVCR2Q9UPI3 526 aa7.68□□□□□ -1.18
LIG3-212ENST00000590181 KIAA1109Q2LD37 5005 aa7.68□□□□□ -1.18
LIG3-212ENST00000590181 IGKV1OR2-108A0A075B7D4 117 aa7.67□□□□□ -1.18
LIG3-212ENST00000590181 TMEM189A5PLL7 270 aa7.67□□□□□ -1.18
LIG3-212ENST00000590181 CXorf65A6NEN9 183 aa7.67□□□□□ -1.18
LIG3-212ENST00000590181 ZNF705EA8MWA4 302 aaPredicted RBP7.67□□□□□ -1.18
LIG3-212ENST00000590181 HYPMO75409 117 aa7.67□□□□□ -1.18
LIG3-212ENST00000590181 IL5P05113 134 aa7.67□□□□□ -1.18
LIG3-212ENST00000590181 HLA-DRB4P13762 266 aa7.67□□□□□ -1.18
LIG3-212ENST00000590181 RPL7P18124 248 aaKnown RBP7.67□□□□□ -1.18
LIG3-212ENST00000590181 ASAH1Q13510 395 aa7.67□□□□□ -1.18
LIG3-212ENST00000590181 PMS2P11Q13670 270 aa7.67□□□□□ -1.18
LIG3-212ENST00000590181 ACTL10Q5JWF8 245 aa7.67□□□□□ -1.18
LIG3-212ENST00000590181 LEMD1Q68G75 181 aa7.67□□□□□ -1.18
LIG3-212ENST00000590181 EBLN2Q6P2I7 272 aa7.67□□□□□ -1.18
LIG3-212ENST00000590181 ZBTB8BQ8NAP8 495 aaPredicted RBP7.67□□□□□ -1.18
LIG3-212ENST00000590181 C11orf45Q8TAV5 145 aa7.67□□□□□ -1.18
LIG3-212ENST00000590181 NEU1Q99519 415 aa7.67□□□□□ -1.18
LIG3-212ENST00000590181 GPN1Q9HCN4 374 aaPredicted RBP7.67□□□□□ -1.18
LIG3-212ENST00000590181 RPRMQ9NS64 109 aa7.67□□□□□ -1.18
LIG3-212ENST00000590181 NUDT15Q9NV35 164 aa7.67□□□□□ -1.18
LIG3-212ENST00000590181 CLEC5AQ9NY25 188 aa7.67□□□□□ -1.18
LIG3-212ENST00000590181 GSKIPQ9P0R6 139 aa7.67□□□□□ -1.18
LIG3-212ENST00000590181 HLA-DRB4X5D2U9 266 aa7.67□□□□□ -1.18
LIG3-212ENST00000590181 ELOA3CA0A087WX78 387 aaPredicted RBP7.66□□□□□ -1.18
LIG3-212ENST00000590181 TEX48A0A1B0GUV7 120 aa7.66□□□□□ -1.18
LIG3-212ENST00000590181 LINC00854A0A1B0GVQ3 168 aa7.66□□□□□ -1.18
LIG3-212ENST00000590181 ZNF98A6NK75 572 aa7.66□□□□□ -1.18
LIG3-212ENST00000590181 H3BMM0 161 aa7.66□□□□□ -1.18
LIG3-212ENST00000590181 L7N2F9 121 aa7.66□□□□□ -1.18
LIG3-212ENST00000590181 SSSCA1O60232 199 aa7.66□□□□□ -1.18
LIG3-212ENST00000590181 AMBPP02760 352 aa7.66□□□□□ -1.18
LIG3-212ENST00000590181 H2AFB2P0C5Z0 115 aa7.66□□□□□ -1.18
LIG3-212ENST00000590181 PAX9P55771 341 aa7.66□□□□□ -1.18
LIG3-212ENST00000590181 B2MP61769 119 aa7.66□□□□□ -1.18
LIG3-212ENST00000590181 VAMP2P63027 116 aa7.66□□□□□ -1.18
LIG3-212ENST00000590181 CYCSP99999 105 aaKnown RBP7.66□□□□□ -1.18
LIG3-212ENST00000590181 CYP2G1PQ6ZSU1 146 aa7.66□□□□□ -1.18
LIG3-212ENST00000590181 ZNF546Q86UE3 836 aa7.66□□□□□ -1.18
LIG3-212ENST00000590181 C12orf45Q8N5I9 185 aaPredicted RBP7.66□□□□□ -1.18
LIG3-212ENST00000590181 FAM24BQ8N5W8 94 aa7.66□□□□□ -1.18
LIG3-212ENST00000590181 C2orf50Q96LR7 162 aa7.66□□□□□ -1.18
LIG3-212ENST00000590181 SAV1Q9H4B6 383 aaPredicted RBP7.66□□□□□ -1.18
LIG3-212ENST00000590181 C7orf66A4D0T2 115 aa7.65□□□□□ -1.18
LIG3-212ENST00000590181 A6NHS1 94 aa7.65□□□□□ -1.18
LIG3-212ENST00000590181 PMS2P5A8MQ11 134 aa7.65□□□□□ -1.18
LIG3-212ENST00000590181 PRAF2O60831 178 aa7.65□□□□□ -1.18
LIG3-212ENST00000590181 DUSP14O95147 198 aaKnown RBP7.65□□□□□ -1.18
LIG3-212ENST00000590181 MBPP02686 304 aaPredicted RBP7.65□□□□□ -1.18
LIG3-212ENST00000590181 S100A11P31949 105 aa7.65□□□□□ -1.18
LIG3-212ENST00000590181 HBG1P69891 147 aa7.65□□□□□ -1.18
LIG3-212ENST00000590181 HBG2P69892 147 aa7.65□□□□□ -1.18
LIG3-212ENST00000590181 GSG1LQ6UXU4 331 aa7.65□□□□□ -1.18
LIG3-212ENST00000590181 ACOT7LQ6ZUV0 252 aa7.65□□□□□ -1.18
LIG3-212ENST00000590181 CSNK1G2-AS1Q8NCQ2 148 aa7.65□□□□□ -1.18
LIG3-212ENST00000590181 CHAC2Q8WUX2 184 aa7.65□□□□□ -1.18
LIG3-212ENST00000590181 SHANK2-AS3Q9BTD1 123 aa7.65□□□□□ -1.18
LIG3-212ENST00000590181 PTTG2Q9NZH5 202 aa7.65□□□□□ -1.18
LIG3-212ENST00000590181 TBC1D24Q9ULP9 559 aa7.65□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms