RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	POLQ	O75417	2590 aa		12.3	□□□□□ -0.44
DDX39A-209	ENST00000589318	CBY3	A6NI87	242 aa		12.3	□□□□□ -0.44
DDX39A-209	ENST00000589318	CEACAM3	P40198	252 aa		12.3	□□□□□ -0.44
DDX39A-209	ENST00000589318	AMT	P48728	403 aa		12.3	□□□□□ -0.44
DDX39A-209	ENST00000589318	VMA21	Q3ZAQ7	101 aa		12.3	□□□□□ -0.44
DDX39A-209	ENST00000589318	GATAD1	Q8WUU5	269 aa		12.3	□□□□□ -0.44
DDX39A-209	ENST00000589318	BORCS7	Q96B45	105 aa		12.3	□□□□□ -0.44
DDX39A-209	ENST00000589318	NDUFA4L2	Q9NRX3	87 aa		12.3	□□□□□ -0.44
DDX39A-209	ENST00000589318	NDUFB4	O95168	129 aa		12.29	□□□□□ -0.44
DDX39A-209	ENST00000589318	CD1B	P29016	333 aa		12.29	□□□□□ -0.44
DDX39A-209	ENST00000589318	PSG5	Q15238	335 aa		12.29	□□□□□ -0.44
DDX39A-209	ENST00000589318	RPEL1	Q2QD12	228 aa		12.29	□□□□□ -0.44
DDX39A-209	ENST00000589318	C10orf55	Q5SWW7	151 aa		12.29	□□□□□ -0.44
DDX39A-209	ENST00000589318	TEX45	Q8NA69	505 aa		12.29	□□□□□ -0.44
DDX39A-209	ENST00000589318	AJUBA	Q96IF1	538 aa		12.29	□□□□□ -0.44
DDX39A-209	ENST00000589318	HINT2	Q9BX68	163 aa		12.29	□□□□□ -0.44
DDX39A-209	ENST00000589318	NPCDR1	Q9BY65	106 aa		12.29	□□□□□ -0.44
DDX39A-209	ENST00000589318	CST9L	Q9H4G1	147 aa		12.29	□□□□□ -0.44
DDX39A-209	ENST00000589318	DOPEY2	Q9Y3R5	2298 aa		12.29	□□□□□ -0.44
DDX39A-209	ENST00000589318		C9JCJ5	164 aa		12.29	□□□□□ -0.44
DDX39A-209	ENST00000589318		J3QKU1	62 aa		12.29	□□□□□ -0.44
DDX39A-209	ENST00000589318	ZNF324	O75467	553 aa	Predicted RBP	12.29	□□□□□ -0.44
DDX39A-209	ENST00000589318	MINOS1	Q5TGZ0	78 aa		12.29	□□□□□ -0.44
DDX39A-209	ENST00000589318	UNQ5815/PRO19632	Q6UWF5	114 aa		12.29	□□□□□ -0.44
DDX39A-209	ENST00000589318	OR10W1	Q8NGF6	305 aa		12.29	□□□□□ -0.44
DDX39A-209	ENST00000589318	OR1L8	Q8NGR8	309 aa		12.29	□□□□□ -0.44
DDX39A-209	ENST00000589318	PLEKHA3	Q9HB20	300 aa		12.29	□□□□□ -0.44
DDX39A-209	ENST00000589318	MINOS1-NBL1	R4GNA1	71 aa		12.29	□□□□□ -0.44
DDX39A-209	ENST00000589318	NAV3	Q8IVL0	2385 aa		12.29	□□□□□ -0.44
DDX39A-209	ENST00000589318	NBPF19	A0A087WUL8	3843 aa		12.28	□□□□□ -0.44
DDX39A-209	ENST00000589318	SNURFL	B1AK76	121 aa		12.28	□□□□□ -0.44
DDX39A-209	ENST00000589318	CA2	P00918	260 aa		12.28	□□□□□ -0.44
DDX39A-209	ENST00000589318	NPY1R	P25929	384 aa		12.28	□□□□□ -0.44
DDX39A-209	ENST00000589318	UBE2E1	P51965	193 aa		12.28	□□□□□ -0.44
DDX39A-209	ENST00000589318	PAX8	Q06710	450 aa		12.28	□□□□□ -0.44
DDX39A-209	ENST00000589318	VAMP3	Q15836	100 aa		12.28	□□□□□ -0.44
DDX39A-209	ENST00000589318	RNF5	Q99942	180 aa		12.28	□□□□□ -0.44
DDX39A-209	ENST00000589318	COMMD5	Q9GZQ3	224 aa		12.28	□□□□□ -0.44
DDX39A-209	ENST00000589318	GNB4	Q9HAV0	340 aa		12.28	□□□□□ -0.44
DDX39A-209	ENST00000589318	SIGLEC9	Q9Y336	463 aa		12.28	□□□□□ -0.44
DDX39A-209	ENST00000589318	TRAV9-2	A0A087WT02	112 aa		12.27	□□□□□ -0.44
DDX39A-209	ENST00000589318	INS-IGF2	F8WCM5	200 aa		12.27	□□□□□ -0.44
DDX39A-209	ENST00000589318	HINT1	P49773	126 aa	Predicted RBP	12.27	□□□□□ -0.44
DDX39A-209	ENST00000589318	DSCR9	P59020	149 aa		12.27	□□□□□ -0.44
DDX39A-209	ENST00000589318	ENY2	Q9NPA8	101 aa		12.27	□□□□□ -0.44
DDX39A-209	ENST00000589318	ABCA12	Q86UK0	2595 aa		12.27	□□□□□ -0.44
DDX39A-209	ENST00000589318		A0A1W2PS18	150 aa		12.27	□□□□□ -0.45
DDX39A-209	ENST00000589318	OOSP1	A8MZH6	123 aa		12.27	□□□□□ -0.45
DDX39A-209	ENST00000589318	HMGB3	O15347	200 aa	Known RBP	12.27	□□□□□ -0.45
DDX39A-209	ENST00000589318	MPDU1	O75352	247 aa		12.27	□□□□□ -0.45
DDX39A-209	ENST00000589318	OR10J4	P0C629	311 aa		12.27	□□□□□ -0.45
DDX39A-209	ENST00000589318	SSBP2	P81877	361 aa	Predicted RBP	12.27	□□□□□ -0.45
DDX39A-209	ENST00000589318	NUDT11	Q96G61	164 aa		12.27	□□□□□ -0.45
DDX39A-209	ENST00000589318	FAM103A1	Q9BTL3	118 aa	Known RBP	12.27	□□□□□ -0.45
DDX39A-209	ENST00000589318	CELSR1	Q9NYQ6	3014 aa		12.26	□□□□□ -0.45
DDX39A-209	ENST00000589318		A0A096LNT2	108 aa		12.26	□□□□□ -0.45
DDX39A-209	ENST00000589318	TMEM238	C9JI98	176 aa		12.26	□□□□□ -0.45
DDX39A-209	ENST00000589318	C3orf79	P0CE67	100 aa		12.26	□□□□□ -0.45
DDX39A-209	ENST00000589318	APC	P25054	2843 aa		12.26	□□□□□ -0.45
DDX39A-209	ENST00000589318	HELZ2	Q9BYK8	2649 aa	Known RBP	12.26	□□□□□ -0.45
DDX39A-209	ENST00000589318	HLA-DQA1	P01909	254 aa		12.25	□□□□□ -0.45
DDX39A-209	ENST00000589318	RNASE2	P10153	161 aa	Known RBP	12.25	□□□□□ -0.45
DDX39A-209	ENST00000589318	CD24	P25063	80 aa		12.25	□□□□□ -0.45
DDX39A-209	ENST00000589318	IER3	P46695	156 aa		12.25	□□□□□ -0.45
DDX39A-209	ENST00000589318	WT1-AS	Q06250	92 aa		12.25	□□□□□ -0.45
DDX39A-209	ENST00000589318	MMD2	Q8IY49	270 aa		12.25	□□□□□ -0.45
DDX39A-209	ENST00000589318	FBXL15	Q9H469	300 aa		12.25	□□□□□ -0.45
DDX39A-209	ENST00000589318		A0A1W2PPV4	95 aa		12.25	□□□□□ -0.45
DDX39A-209	ENST00000589318	C2orf83	Q53S99	150 aa		12.25	□□□□□ -0.45
DDX39A-209	ENST00000589318	PRR27	Q6MZM9	219 aa		12.25	□□□□□ -0.45
DDX39A-209	ENST00000589318	CCDC144NL	Q6NUI1	221 aa		12.25	□□□□□ -0.45
DDX39A-209	ENST00000589318	PPP1R27	Q86WC6	154 aa		12.25	□□□□□ -0.45
DDX39A-209	ENST00000589318	C1orf159	Q96HA4	380 aa		12.25	□□□□□ -0.45
DDX39A-209	ENST00000589318	EAF1	Q96JC9	268 aa	Predicted RBP	12.25	□□□□□ -0.45
DDX39A-209	ENST00000589318	UHRF2	Q96PU4	802 aa		12.25	□□□□□ -0.45
DDX39A-209	ENST00000589318	WDR83OS	Q9Y284	106 aa		12.25	□□□□□ -0.45
DDX39A-209	ENST00000589318	CENPVL3	A0A0U1RRI6	287 aa		12.24	□□□□□ -0.45
DDX39A-209	ENST00000589318	NDUFA3	O95167	84 aa		12.24	□□□□□ -0.45
DDX39A-209	ENST00000589318	CXorf1	O96002	111 aa		12.24	□□□□□ -0.45
DDX39A-209	ENST00000589318	MT-CO2	P00403	227 aa		12.24	□□□□□ -0.45
DDX39A-209	ENST00000589318	MOS	P00540	346 aa		12.24	□□□□□ -0.45
DDX39A-209	ENST00000589318	SLC25A16	P16260	332 aa		12.24	□□□□□ -0.45
DDX39A-209	ENST00000589318	SAA4	P35542	130 aa		12.24	□□□□□ -0.45
DDX39A-209	ENST00000589318	ATP5G3	P48201	142 aa		12.24	□□□□□ -0.45
DDX39A-209	ENST00000589318	CX3CL1	P78423	397 aa		12.24	□□□□□ -0.45
DDX39A-209	ENST00000589318	PIP4P2	Q8N4L2	257 aa		12.24	□□□□□ -0.45
DDX39A-209	ENST00000589318	ZNF114	Q8NC26	417 aa		12.24	□□□□□ -0.45
DDX39A-209	ENST00000589318	NPB	Q8NG41	125 aa		12.24	□□□□□ -0.45
DDX39A-209	ENST00000589318	OR4F17	Q8NGA8	305 aa		12.24	□□□□□ -0.45
DDX39A-209	ENST00000589318	OCC1	Q8TAD7	63 aa		12.24	□□□□□ -0.45
DDX39A-209	ENST00000589318	C11orf52	Q96A22	123 aa		12.24	□□□□□ -0.45
DDX39A-209	ENST00000589318	PSMG3-AS1	Q96PY0	264 aa		12.24	□□□□□ -0.45
DDX39A-209	ENST00000589318	ARL2-SNX15	V9GYD0	113 aa		12.24	□□□□□ -0.45
DDX39A-209	ENST00000589318	LINC00869	P0C866	280 aa		12.23	□□□□□ -0.45
DDX39A-209	ENST00000589318	ATP5I	P56385	69 aa	Predicted RBP	12.23	□□□□□ -0.45
DDX39A-209	ENST00000589318	EBI3	Q14213	229 aa		12.23	□□□□□ -0.45
DDX39A-209	ENST00000589318	TREML4	Q6UXN2	200 aa		12.23	□□□□□ -0.45
DDX39A-209	ENST00000589318	NIT1	Q86X76	327 aa		12.23	□□□□□ -0.45
DDX39A-209	ENST00000589318		Q8N6K4	173 aa		12.23	□□□□□ -0.45
DDX39A-209	ENST00000589318	NAT8B	Q9UHF3	227 aa		12.23	□□□□□ -0.45

Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms