RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 C9orf170A2RU37 121 aa14.77□□□□□ -0.05
SHMT1-209ENST00000582653 H3BP45 60 aa14.77□□□□□ -0.05
SHMT1-209ENST00000582653 NKX2-1P43699 371 aaPredicted RBP14.77□□□□□ -0.05
SHMT1-209ENST00000582653 INPP1P49441 399 aa14.77□□□□□ -0.05
SHMT1-209ENST00000582653 NUTF2P61970 127 aaKnown RBP14.77□□□□□ -0.05
SHMT1-209ENST00000582653 ZNF701M0R085 212 aaPredicted RBP14.76□□□□□ -0.05
SHMT1-209ENST00000582653 HLA-DRB4P13762 266 aa14.76□□□□□ -0.05
SHMT1-209ENST00000582653 GATA2P23769 480 aaPredicted RBP14.76□□□□□ -0.05
SHMT1-209ENST00000582653 FXYD7P58549 80 aa14.76□□□□□ -0.05
SHMT1-209ENST00000582653 RPP30P78346 268 aaKnown RBP14.76□□□□□ -0.05
SHMT1-209ENST00000582653 C1orf194Q5T5A4 169 aa14.76□□□□□ -0.05
SHMT1-209ENST00000582653 TRIQKQ629K1 86 aa14.76□□□□□ -0.05
SHMT1-209ENST00000582653 TMEM182Q6ZP80 229 aaPredicted RBP14.76□□□□□ -0.05
SHMT1-209ENST00000582653 Q6ZTC4 211 aa14.76□□□□□ -0.05
SHMT1-209ENST00000582653 C1QTNF4Q9BXJ3 329 aa14.76□□□□□ -0.05
SHMT1-209ENST00000582653 HLA-DRB4X5D2U9 266 aa14.76□□□□□ -0.05
SHMT1-209ENST00000582653 TRAV10A0A0B4J240 114 aa14.75□□□□□ -0.05
SHMT1-209ENST00000582653 SOCS3O14543 225 aa14.75□□□□□ -0.05
SHMT1-209ENST00000582653 NDUFB6O95139 128 aa14.75□□□□□ -0.05
SHMT1-209ENST00000582653 ID1P41134 155 aa14.75□□□□□ -0.05
SHMT1-209ENST00000582653 POLR2GP62487 172 aaKnown RBP eCLIP14.75□□□□□ -0.05
SHMT1-209ENST00000582653 ZNF767PQ75MW2 155 aa14.75□□□□□ -0.05
SHMT1-209ENST00000582653 OR8I2Q8N0Y5 310 aa14.75□□□□□ -0.05
SHMT1-209ENST00000582653 SDHCQ99643 169 aaPredicted RBP14.75□□□□□ -0.05
SHMT1-209ENST00000582653 CELA1Q9UNI1 258 aa14.75□□□□□ -0.05
SHMT1-209ENST00000582653 NAP1L6A6NFF2 107 aa14.74□□□□□ -0.05
SHMT1-209ENST00000582653 UBE2MP61081 183 aaKnown RBP14.74□□□□□ -0.05
SHMT1-209ENST00000582653 ID3Q02535 119 aa14.74□□□□□ -0.05
SHMT1-209ENST00000582653 SAV1Q9H4B6 383 aaPredicted RBP14.74□□□□□ -0.05
SHMT1-209ENST00000582653 STRAPQ9Y3F4 350 aaKnown RBP14.74□□□□□ -0.05
SHMT1-209ENST00000582653 F6UB75 175 aa14.73□□□□□ -0.05
SHMT1-209ENST00000582653 OR4E1P0C645 316 aa14.73□□□□□ -0.05
SHMT1-209ENST00000582653 ORM2P19652 201 aa14.73□□□□□ -0.05
SHMT1-209ENST00000582653 ANXA7P20073 488 aaKnown RBP14.73□□□□□ -0.05
SHMT1-209ENST00000582653 PSMB3P49720 205 aa14.73□□□□□ -0.05
SHMT1-209ENST00000582653 COQ8AQ8NI60 647 aa14.73□□□□□ -0.05
SHMT1-209ENST00000582653 SLC25A22Q9H936 323 aa14.73□□□□□ -0.05
SHMT1-209ENST00000582653 BTCP35070 178 aa14.72□□□□□ -0.05
SHMT1-209ENST00000582653 AKR1C1Q04828 323 aa14.72□□□□□ -0.05
SHMT1-209ENST00000582653 FOXI2Q6ZQN5 318 aa14.72□□□□□ -0.05
SHMT1-209ENST00000582653 ACOT7LQ6ZUV0 252 aa14.72□□□□□ -0.05
SHMT1-209ENST00000582653 OR4B1Q8NGF8 309 aa14.72□□□□□ -0.05
SHMT1-209ENST00000582653 C17orf77Q96MU5 243 aa14.72□□□□□ -0.05
SHMT1-209ENST00000582653 SLC25A32Q9H2D1 315 aa14.72□□□□□ -0.05
SHMT1-209ENST00000582653 PSENENQ9NZ42 101 aa14.72□□□□□ -0.05
SHMT1-209ENST00000582653 DNAH6Q9C0G6 4158 aa14.71□□□□□ -0.05
SHMT1-209ENST00000582653 ZNF98A6NK75 572 aa14.71□□□□□ -0.05
SHMT1-209ENST00000582653 CFDP00746 253 aaPredicted RBP14.71□□□□□ -0.05
SHMT1-209ENST00000582653 C12orf74Q32Q52 190 aa14.71□□□□□ -0.05
SHMT1-209ENST00000582653 BPIFCQ8NFQ6 507 aa14.71□□□□□ -0.05
SHMT1-209ENST00000582653 OR4D5Q8NGN0 318 aa14.71□□□□□ -0.05
SHMT1-209ENST00000582653 C20orf173Q96LM9 149 aa14.71□□□□□ -0.05
SHMT1-209ENST00000582653 RSG1Q9BU20 258 aa14.71□□□□□ -0.05
SHMT1-209ENST00000582653 RNF126Q9BV68 326 aa14.71□□□□□ -0.05
SHMT1-209ENST00000582653 SLC35B3Q9H1N7 401 aa14.71□□□□□ -0.05
SHMT1-209ENST00000582653 IGHV4-4A0A075B6R2 117 aa14.7□□□□□ -0.06
SHMT1-209ENST00000582653 IGHV3OR16-12A0A075B7B8 117 aa14.7□□□□□ -0.06
SHMT1-209ENST00000582653 SMCO3A2RU48 225 aa14.7□□□□□ -0.06
SHMT1-209ENST00000582653 ISLRO14498 428 aa14.7□□□□□ -0.06
SHMT1-209ENST00000582653 SSSCA1O60232 199 aa14.7□□□□□ -0.06
SHMT1-209ENST00000582653 CCNKO75909 580 aa14.7□□□□□ -0.06
SHMT1-209ENST00000582653 C4orf46Q504U0 113 aa14.7□□□□□ -0.06
SHMT1-209ENST00000582653 ZNF705AQ6ZN79 300 aaPredicted RBP14.7□□□□□ -0.06
SHMT1-209ENST00000582653 ZNF709Q8N972 641 aa14.7□□□□□ -0.06
SHMT1-209ENST00000582653 OR1B1Q8NGR6 318 aa14.7□□□□□ -0.06
SHMT1-209ENST00000582653 PMS2P5A8MQ11 134 aa14.69□□□□□ -0.06
SHMT1-209ENST00000582653 IFNA21P01568 189 aa14.69□□□□□ -0.06
SHMT1-209ENST00000582653 PAX9P55771 341 aa14.69□□□□□ -0.06
SHMT1-209ENST00000582653 TMEM144Q7Z5S9 345 aa14.69□□□□□ -0.06
SHMT1-209ENST00000582653 C16orf92Q96LL3 132 aa14.69□□□□□ -0.06
SHMT1-209ENST00000582653 NEU1Q99519 415 aa14.69□□□□□ -0.06
SHMT1-209ENST00000582653 DOK5Q9P104 306 aa14.69□□□□□ -0.06
SHMT1-209ENST00000582653 ZNF705FA8MVS1 300 aaPredicted RBP14.68□□□□□ -0.06
SHMT1-209ENST00000582653 ZNF705DP0CH99 300 aaPredicted RBP14.68□□□□□ -0.06
SHMT1-209ENST00000582653 ZNF705BP0CI00 300 aaPredicted RBP14.68□□□□□ -0.06
SHMT1-209ENST00000582653 IL7P13232 177 aa14.68□□□□□ -0.06
SHMT1-209ENST00000582653 GALR1P47211 349 aa14.68□□□□□ -0.06
SHMT1-209ENST00000582653 EMP1P54849 157 aa14.68□□□□□ -0.06
SHMT1-209ENST00000582653 FAM78BQ5VT40 261 aa14.68□□□□□ -0.06
SHMT1-209ENST00000582653 IGFL4Q6B9Z1 124 aa14.68□□□□□ -0.06
SHMT1-209ENST00000582653 EBLN2Q6P2I7 272 aa14.68□□□□□ -0.06
SHMT1-209ENST00000582653 SMIM8Q96KF7 97 aa14.68□□□□□ -0.06
SHMT1-209ENST00000582653 CLUHP3Q96NS8 147 aa14.68□□□□□ -0.06
SHMT1-209ENST00000582653 TMEM147Q9BVK8 224 aa14.68□□□□□ -0.06
SHMT1-209ENST00000582653 SCRT1Q9BWW7 348 aa14.68□□□□□ -0.06
SHMT1-209ENST00000582653 SLC45A2Q9UMX9 530 aa14.68□□□□□ -0.06
SHMT1-209ENST00000582653 DEFB131BA0A096LNP1 70 aa14.67□□□□□ -0.06
SHMT1-209ENST00000582653 A0A0J9YX75 114 aa14.67□□□□□ -0.06
SHMT1-209ENST00000582653 SMIM9A6NGZ8 99 aa14.67□□□□□ -0.06
SHMT1-209ENST00000582653 CENPXA8MT69 81 aa14.67□□□□□ -0.06
SHMT1-209ENST00000582653 SCGB1D2O95969 90 aa14.67□□□□□ -0.06
SHMT1-209ENST00000582653 RRAS2P62070 204 aaPredicted RBP14.67□□□□□ -0.06
SHMT1-209ENST00000582653 PSG9Q00887 426 aa14.67□□□□□ -0.06
SHMT1-209ENST00000582653 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa14.67□□□□□ -0.06
SHMT1-209ENST00000582653 CYP2G1PQ6ZSU1 146 aa14.67□□□□□ -0.06
SHMT1-209ENST00000582653 RPRMQ9NS64 109 aa14.67□□□□□ -0.06
SHMT1-209ENST00000582653 IL5P05113 134 aa14.66□□□□□ -0.06
SHMT1-209ENST00000582653 METTL15P1P0C7V9 234 aa14.66□□□□□ -0.06
SHMT1-209ENST00000582653 MEOX2P50222 304 aa14.66□□□□□ -0.06
SHMT1-209ENST00000582653 IAH1Q2TAA2 248 aaPredicted RBP14.66□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms