RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 ZNF664Q8N3J9 261 aa8.01□□□□□ -1.13
VPS53-220ENST00000576149 FAM168AQ92567 244 aa8.01□□□□□ -1.13
VPS53-220ENST00000576149 MBD6Q96DN6 1003 aa8.01□□□□□ -1.13
VPS53-220ENST00000576149 RELNP78509 3460 aa8.01□□□□□ -1.13
VPS53-220ENST00000576149 ANKHD1Q8IWZ3 2542 aaKnown RBP8□□□□□ -1.13
VPS53-220ENST00000576149 LOC105371242A0A075B767 164 aa8□□□□□ -1.13
VPS53-220ENST00000576149 IZUMO1RA6ND01 250 aa8□□□□□ -1.13
VPS53-220ENST00000576149 SERF1AO75920 110 aa8□□□□□ -1.13
VPS53-220ENST00000576149 CA1P00915 261 aaPredicted RBP8□□□□□ -1.13
VPS53-220ENST00000576149 SLC25A5P05141 298 aaKnown RBP8□□□□□ -1.13
VPS53-220ENST00000576149 PAFAH1B2P68402 229 aa8□□□□□ -1.13
VPS53-220ENST00000576149 SLC35B1P78383 322 aa8□□□□□ -1.13
VPS53-220ENST00000576149 ZNF48Q96MX3 618 aaPredicted RBP8□□□□□ -1.13
VPS53-220ENST00000576149 SSBP3Q9BWW4 388 aaPredicted RBP8□□□□□ -1.13
VPS53-220ENST00000576149 C7orf69Q9H7B7 122 aa8□□□□□ -1.13
VPS53-220ENST00000576149 NAT8BQ9UHF3 227 aa8□□□□□ -1.13
VPS53-220ENST00000576149 HIGD1AQ9Y241 93 aa8□□□□□ -1.13
VPS53-220ENST00000576149 ODF3BA8MYP8 253 aa8□□□□□ -1.13
VPS53-220ENST00000576149 NBR2O15453 112 aa8□□□□□ -1.13
VPS53-220ENST00000576149 CNIH1O95406 144 aa8□□□□□ -1.13
VPS53-220ENST00000576149 AMY1AP04745 511 aa8□□□□□ -1.13
VPS53-220ENST00000576149 PRTN3P24158 256 aa8□□□□□ -1.13
VPS53-220ENST00000576149 CEACAM3P40198 252 aa8□□□□□ -1.13
VPS53-220ENST00000576149 UBE2G1P62253 170 aa8□□□□□ -1.13
VPS53-220ENST00000576149 NUDT10Q8NFP7 164 aa8□□□□□ -1.13
VPS53-220ENST00000576149 NPBQ8NG41 125 aa8□□□□□ -1.13
VPS53-220ENST00000576149 SMIM12Q96EX1 92 aa8□□□□□ -1.13
VPS53-220ENST00000576149 NUDT11Q96G61 164 aa8□□□□□ -1.13
VPS53-220ENST00000576149 C14orf144Q96I85 54 aa8□□□□□ -1.13
VPS53-220ENST00000576149 MS4A10Q96PG2 267 aa8□□□□□ -1.13
VPS53-220ENST00000576149 HILPDAQ9Y5L2 63 aa8□□□□□ -1.13
VPS53-220ENST00000576149 TCAPO15273 167 aa7.99□□□□□ -1.13
VPS53-220ENST00000576149 NDUFA3O95167 84 aa7.99□□□□□ -1.13
VPS53-220ENST00000576149 TPPP2P59282 170 aa7.99□□□□□ -1.13
VPS53-220ENST00000576149 KLRD1Q13241 179 aa7.99□□□□□ -1.13
VPS53-220ENST00000576149 ASPHD1Q5U4P2 390 aa7.99□□□□□ -1.13
VPS53-220ENST00000576149 LEMD1Q68G75 181 aa7.99□□□□□ -1.13
VPS53-220ENST00000576149 MRPL54Q6P161 138 aaKnown RBP7.99□□□□□ -1.13
VPS53-220ENST00000576149 S100A7AQ86SG5 101 aa7.99□□□□□ -1.13
VPS53-220ENST00000576149 BAGE3Q86Y29 109 aa7.99□□□□□ -1.13
VPS53-220ENST00000576149 C5orf17Q8NAS9 161 aa7.99□□□□□ -1.13
VPS53-220ENST00000576149 GRAMD2BQ96HH9 432 aa7.99□□□□□ -1.13
VPS53-220ENST00000576149 A8MWP6 167 aa7.99□□□□□ -1.13
VPS53-220ENST00000576149 F2Z2F3 143 aa7.99□□□□□ -1.13
VPS53-220ENST00000576149 K7EIM0 57 aa7.99□□□□□ -1.13
VPS53-220ENST00000576149 BRI3O95415 125 aa7.99□□□□□ -1.13
VPS53-220ENST00000576149 IGKV1-17P01599 117 aa7.99□□□□□ -1.13
VPS53-220ENST00000576149 HLA-DQA1P01909 254 aa7.99□□□□□ -1.13
VPS53-220ENST00000576149 LYZP61626 148 aa7.99□□□□□ -1.13
VPS53-220ENST00000576149 UNQ6494/PRO21346Q6UXR6 183 aa7.99□□□□□ -1.13
VPS53-220ENST00000576149 REC114Q7Z4M0 266 aa7.99□□□□□ -1.13
VPS53-220ENST00000576149 DTX2Q86UW9 622 aa7.99□□□□□ -1.13
VPS53-220ENST00000576149 NOL4LQ96MY1 436 aaPredicted RBP7.99□□□□□ -1.13
VPS53-220ENST00000576149 GPR82Q96P67 336 aa7.99□□□□□ -1.13
VPS53-220ENST00000576149 RASL11BQ9BPW5 248 aa7.99□□□□□ -1.13
VPS53-220ENST00000576149 ATG101Q9BSB4 218 aa7.99□□□□□ -1.13
VPS53-220ENST00000576149 CHRDL1Q9BU40 450 aa7.99□□□□□ -1.13
VPS53-220ENST00000576149 GNB4Q9HAV0 340 aa7.99□□□□□ -1.13
VPS53-220ENST00000576149 OR10J3Q5JRS4 329 aa7.98□□□□□ -1.13
VPS53-220ENST00000576149 RASL11AQ6T310 242 aa7.98□□□□□ -1.13
VPS53-220ENST00000576149 RNASE8Q8TDE3 154 aaKnown RBP7.98□□□□□ -1.13
VPS53-220ENST00000576149 WIPF2Q8TF74 440 aaPredicted RBP7.98□□□□□ -1.13
VPS53-220ENST00000576149 MLST8Q9BVC4 326 aa7.98□□□□□ -1.13
VPS53-220ENST00000576149 TPPP3Q9BW30 176 aa7.98□□□□□ -1.13
VPS53-220ENST00000576149 SLC25A39Q9BZJ4 359 aaPredicted RBP7.98□□□□□ -1.13
VPS53-220ENST00000576149 Q9H3A6 140 aa7.98□□□□□ -1.13
VPS53-220ENST00000576149 MRPL27Q9P0M9 148 aaKnown RBP7.98□□□□□ -1.13
VPS53-220ENST00000576149 TMEM14CQ9P0S9 112 aa7.98□□□□□ -1.13
VPS53-220ENST00000576149 SPTA1P02549 2419 aa7.98□□□□□ -1.13
VPS53-220ENST00000576149 TOMM40O96008 361 aa7.98□□□□□ -1.13
VPS53-220ENST00000576149 TCRAP04437 139 aa7.98□□□□□ -1.13
VPS53-220ENST00000576149 HIST1H1EP10412 219 aaKnown RBP7.98□□□□□ -1.13
VPS53-220ENST00000576149 CD24P25063 80 aa7.98□□□□□ -1.13
VPS53-220ENST00000576149 PRR27Q6MZM9 219 aa7.98□□□□□ -1.13
VPS53-220ENST00000576149 NUP35Q8NFH5 326 aa7.98□□□□□ -1.13
VPS53-220ENST00000576149 FMC1Q96HJ9 113 aa7.98□□□□□ -1.13
VPS53-220ENST00000576149 SGK494Q96LW2 274 aa7.98□□□□□ -1.13
VPS53-220ENST00000576149 ZNF331Q9NQX6 463 aaPredicted RBP7.98□□□□□ -1.13
VPS53-220ENST00000576149 NAGKQ9UJ70 344 aa7.98□□□□□ -1.13
VPS53-220ENST00000576149 ABCA4P78363 2273 aa7.97□□□□□ -1.13
VPS53-220ENST00000576149 H3BTX0 84 aa7.97□□□□□ -1.13
VPS53-220ENST00000576149 BMPR1BO00238 502 aa7.97□□□□□ -1.13
VPS53-220ENST00000576149 LTAP01374 205 aa7.97□□□□□ -1.13
VPS53-220ENST00000576149 ARL3P36405 182 aa7.97□□□□□ -1.13
VPS53-220ENST00000576149 GPR6P46095 362 aaPredicted RBP7.97□□□□□ -1.13
VPS53-220ENST00000576149 USF2Q15853 346 aaPredicted RBP7.97□□□□□ -1.13
VPS53-220ENST00000576149 KIAA1644Q3SXP7 199 aa7.97□□□□□ -1.13
VPS53-220ENST00000576149 FBLN7Q53RD9 439 aa7.97□□□□□ -1.13
VPS53-220ENST00000576149 Q6ZWC4 215 aa7.97□□□□□ -1.13
VPS53-220ENST00000576149 TSKUQ8WUA8 353 aa7.97□□□□□ -1.13
VPS53-220ENST00000576149 IGFBPL1Q8WX77 278 aa7.97□□□□□ -1.13
VPS53-220ENST00000576149 ZNF586Q9NXT0 402 aa7.97□□□□□ -1.13
VPS53-220ENST00000576149 C5orf64Q2M2E5 130 aa7.97□□□□□ -1.13
VPS53-220ENST00000576149 DAZAP1Q96EP5 407 aaKnown RBP7.97□□□□□ -1.13
VPS53-220ENST00000576149 FAM103A1Q9BTL3 118 aaKnown RBP7.97□□□□□ -1.13
VPS53-220ENST00000576149 OTORQ9NRC9 128 aa7.97□□□□□ -1.13
VPS53-220ENST00000576149 IGF2RP11717 2491 aa7.96□□□□□ -1.13
VPS53-220ENST00000576149 TPRP12270 2363 aaKnown RBP7.96□□□□□ -1.13
VPS53-220ENST00000576149 A0A1W2PRD5 423 aa7.96□□□□□ -1.14
VPS53-220ENST00000576149 A0A1W2PRF3 423 aa7.96□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms