RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 LYNX1P0DP58 116 aa11.68□□□□□ -0.54
VPS35-210ENST00000568784 NHLH1Q02575 133 aa11.68□□□□□ -0.54
VPS35-210ENST00000568784 IGFBPL1Q8WX77 278 aa11.68□□□□□ -0.54
VPS35-210ENST00000568784 ANKRD11Q6UB99 2663 aaPredicted RBP11.68□□□□□ -0.54
VPS35-210ENST00000568784 IGHV3OR16-8A0A075B7F1 116 aa11.68□□□□□ -0.54
VPS35-210ENST00000568784 LINC00322Q6ZN03 302 aaPredicted RBP11.68□□□□□ -0.54
VPS35-210ENST00000568784 MUC15Q8N387 334 aa11.68□□□□□ -0.54
VPS35-210ENST00000568784 FXYD5Q96DB9 178 aa11.68□□□□□ -0.54
VPS35-210ENST00000568784 MRPL27Q9P0M9 148 aaKnown RBP11.68□□□□□ -0.54
VPS35-210ENST00000568784 HIGD1AQ9Y241 93 aa11.68□□□□□ -0.54
VPS35-210ENST00000568784 COX11Q9Y6N1 276 aa11.68□□□□□ -0.54
VPS35-210ENST00000568784 CFAP47Q6ZTR5 3102 aa11.67□□□□□ -0.54
VPS35-210ENST00000568784 IGHV3-35A0A0C4DH35 117 aa11.67□□□□□ -0.54
VPS35-210ENST00000568784 CGB3P0DN86 165 aa11.67□□□□□ -0.54
VPS35-210ENST00000568784 CGB7P0DN87 165 aa11.67□□□□□ -0.54
VPS35-210ENST00000568784 TMEM11P17152 192 aa11.67□□□□□ -0.54
VPS35-210ENST00000568784 SEM1Q6ZVN7 128 aa11.67□□□□□ -0.54
VPS35-210ENST00000568784 VSTM5A8MXK1 200 aa11.67□□□□□ -0.54
VPS35-210ENST00000568784 C5orf17Q8NAS9 161 aa11.67□□□□□ -0.54
VPS35-210ENST00000568784 STXBP6Q8NFX7 210 aa11.67□□□□□ -0.54
VPS35-210ENST00000568784 RASL11BQ9BPW5 248 aa11.67□□□□□ -0.54
VPS35-210ENST00000568784 LDLRAD2Q5SZI1 272 aa11.66□□□□□ -0.54
VPS35-210ENST00000568784 TMUB1Q9BVT8 246 aa11.66□□□□□ -0.54
VPS35-210ENST00000568784 LHBP01229 141 aa11.66□□□□□ -0.54
VPS35-210ENST00000568784 APOHP02749 345 aaPredicted RBP11.66□□□□□ -0.54
VPS35-210ENST00000568784 CT45A10P0DMU9 189 aa11.66□□□□□ -0.54
VPS35-210ENST00000568784 UBE2V1Q13404 147 aa11.66□□□□□ -0.54
VPS35-210ENST00000568784 ADGRG4Q8IZF6 3080 aa11.66□□□□□ -0.54
VPS35-210ENST00000568784 ARHGAP32A7KAX9 2087 aa11.66□□□□□ -0.54
VPS35-210ENST00000568784 CEACAM8P31997 349 aaPredicted RBP11.66□□□□□ -0.54
VPS35-210ENST00000568784 OR2T8A6NH00 312 aa11.65□□□□□ -0.54
VPS35-210ENST00000568784 SYS1-DBNDD2H3BUS1 97 aa11.65□□□□□ -0.54
VPS35-210ENST00000568784 TM4SF5O14894 197 aa11.65□□□□□ -0.54
VPS35-210ENST00000568784 CFHR2P36980 270 aa11.65□□□□□ -0.54
VPS35-210ENST00000568784 C1orf185Q5T7R7 199 aa11.65□□□□□ -0.54
VPS35-210ENST00000568784 MRPL52Q86TS9 123 aaKnown RBP11.65□□□□□ -0.54
VPS35-210ENST00000568784 RPEQ96AT9 228 aa11.65□□□□□ -0.54
VPS35-210ENST00000568784 VWC2LB2RUY7 222 aa11.65□□□□□ -0.54
VPS35-210ENST00000568784 POU2AF1Q16633 256 aa11.65□□□□□ -0.54
VPS35-210ENST00000568784 FAM162BQ5T6X4 162 aa11.65□□□□□ -0.54
VPS35-210ENST00000568784 RUSC1-AS1Q66K80 236 aa11.65□□□□□ -0.54
VPS35-210ENST00000568784 RBPMS2Q6ZRY4 209 aaKnown RBP11.65□□□□□ -0.54
VPS35-210ENST00000568784 SPATA12Q7Z6I5 190 aa11.65□□□□□ -0.54
VPS35-210ENST00000568784 IGHV1-24A0A0C4DH33 117 aa11.65□□□□□ -0.54
VPS35-210ENST00000568784 BSPH1Q075Z2 132 aa11.65□□□□□ -0.54
VPS35-210ENST00000568784 RAB37Q96AX2 223 aa11.65□□□□□ -0.54
VPS35-210ENST00000568784 C22orf46C9J442 243 aa11.64□□□□□ -0.55
VPS35-210ENST00000568784 FNDC10F2Z333 226 aa11.64□□□□□ -0.55
VPS35-210ENST00000568784 KLK10O43240 276 aa11.64□□□□□ -0.55
VPS35-210ENST00000568784 TCRAP04437 139 aa11.64□□□□□ -0.55
VPS35-210ENST00000568784 AMMECR1LQ6DCA0 310 aa11.64□□□□□ -0.55
VPS35-210ENST00000568784 CREBBPQ92793 2442 aa11.64□□□□□ -0.55
VPS35-210ENST00000568784 ARF6P62330 175 aa11.64□□□□□ -0.55
VPS35-210ENST00000568784 AP5S1Q9NUS5 200 aa11.64□□□□□ -0.55
VPS35-210ENST00000568784 ATRXP46100 2492 aa11.64□□□□□ -0.55
VPS35-210ENST00000568784 C17orf100A8MU93 164 aa11.64□□□□□ -0.55
VPS35-210ENST00000568784 M0R3E3 92 aa11.64□□□□□ -0.55
VPS35-210ENST00000568784 PSG1P11464 419 aa11.64□□□□□ -0.55
VPS35-210ENST00000568784 RELQ04864 619 aaPredicted RBP11.64□□□□□ -0.55
VPS35-210ENST00000568784 TM4SF20Q53R12 229 aa11.64□□□□□ -0.55
VPS35-210ENST00000568784 KLF17Q5JT82 389 aaPredicted RBP11.64□□□□□ -0.55
VPS35-210ENST00000568784 OR4F17Q8NGA8 305 aa11.64□□□□□ -0.55
VPS35-210ENST00000568784 TMEM167AQ8TBQ9 72 aa11.64□□□□□ -0.55
VPS35-210ENST00000568784 ORAOV1Q8WV07 137 aa11.64□□□□□ -0.55
VPS35-210ENST00000568784 HILPDAQ9Y5L2 63 aa11.64□□□□□ -0.55
VPS35-210ENST00000568784 C16orf97H3BN30 126 aa11.64□□□□□ -0.55
VPS35-210ENST00000568784 FCGR2BP31994 310 aaPredicted RBP11.64□□□□□ -0.55
VPS35-210ENST00000568784 Q71RC1 249 aaPredicted RBP11.64□□□□□ -0.55
VPS35-210ENST00000568784 TEX45Q8NA69 505 aa11.64□□□□□ -0.55
VPS35-210ENST00000568784 GTSF1Q8WW33 167 aa11.64□□□□□ -0.55
VPS35-210ENST00000568784 TMEM186Q96B77 213 aa11.64□□□□□ -0.55
VPS35-210ENST00000568784 IGHV2-26A0A0B4J1V2 119 aa11.63□□□□□ -0.55
VPS35-210ENST00000568784 MRPS16Q9Y3D3 137 aaKnown RBP11.63□□□□□ -0.55
VPS35-210ENST00000568784 FAM215AQ9Y5M1 114 aa11.63□□□□□ -0.55
VPS35-210ENST00000568784 PRRG2O14669 202 aa11.63□□□□□ -0.55
VPS35-210ENST00000568784 ITGB1BP1O14713 200 aa11.63□□□□□ -0.55
VPS35-210ENST00000568784 ARMS2P0C7Q2 107 aa11.63□□□□□ -0.55
VPS35-210ENST00000568784 ONECUT1Q9UBC0 465 aa11.63□□□□□ -0.55
VPS35-210ENST00000568784 IGHV1-69-2A0A0G2JMI3 117 aa11.63□□□□□ -0.55
VPS35-210ENST00000568784 K7EQM0 130 aa11.63□□□□□ -0.55
VPS35-210ENST00000568784 IGHV3-23P01764 117 aa11.63□□□□□ -0.55
VPS35-210ENST00000568784 HLA-DRB1P01911 266 aa11.63□□□□□ -0.55
VPS35-210ENST00000568784 ATP5IP56385 69 aaPredicted RBP11.63□□□□□ -0.55
VPS35-210ENST00000568784 GUSBP1Q15486 140 aa11.63□□□□□ -0.55
VPS35-210ENST00000568784 CR1LQ2VPA4 569 aa11.63□□□□□ -0.55
VPS35-210ENST00000568784 BPIFA4PQ86YQ2 179 aa11.63□□□□□ -0.55
VPS35-210ENST00000568784 OR5AN1Q8NGI8 311 aa11.63□□□□□ -0.55
VPS35-210ENST00000568784 C2orf70A6NJV1 201 aa11.62□□□□□ -0.55
VPS35-210ENST00000568784 LIPFP07098 398 aa11.62□□□□□ -0.55
VPS35-210ENST00000568784 C17orf77Q96MU5 243 aa11.62□□□□□ -0.55
VPS35-210ENST00000568784 HSPB8Q9UJY1 196 aa11.62□□□□□ -0.55
VPS35-210ENST00000568784 C19orf67A6NJJ6 358 aa11.62□□□□□ -0.55
VPS35-210ENST00000568784 ZNF833PQ6ZTB9 187 aa11.62□□□□□ -0.55
VPS35-210ENST00000568784 F11RQ9Y624 299 aaKnown RBP11.62□□□□□ -0.55
VPS35-210ENST00000568784 IGLV3-9A0A075B6K5 115 aa11.61□□□□□ -0.55
VPS35-210ENST00000568784 IGKV1D-37A0A075B6S9 117 aa11.61□□□□□ -0.55
VPS35-210ENST00000568784 A0A1B0GUT8 65 aa11.61□□□□□ -0.55
VPS35-210ENST00000568784 MBD3L4A6NDZ8 208 aaPredicted RBP11.61□□□□□ -0.55
VPS35-210ENST00000568784 MBD3L3A6NE82 208 aaPredicted RBP11.61□□□□□ -0.55
VPS35-210ENST00000568784 MBD3L5A6NJ08 208 aaPredicted RBP11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms