RNA–Protein interactions for RNA: ENST00000568443.2

CLN3-232, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 969 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-232ENST00000568443 FLVCR2Q9UPI3 526 aa16.26■□□□□ 0.19
CLN3-232ENST00000568443 KMT2AQ03164 3969 aa16.25■□□□□ 0.19
CLN3-232ENST00000568443 ELOA3CA0A087WX78 387 aaPredicted RBP16.25■□□□□ 0.19
CLN3-232ENST00000568443 CENPXA8MT69 81 aa16.25■□□□□ 0.19
CLN3-232ENST00000568443 H3BP45 60 aa16.25■□□□□ 0.19
CLN3-232ENST00000568443 IFNA21P01568 189 aa16.25■□□□□ 0.19
CLN3-232ENST00000568443 PSMB3P49720 205 aa16.25■□□□□ 0.19
CLN3-232ENST00000568443 ID3Q02535 119 aa16.25■□□□□ 0.19
CLN3-232ENST00000568443 IGLL5B9A064 214 aa16.24■□□□□ 0.19
CLN3-232ENST00000568443 IGKV3-20P01619 116 aa16.24■□□□□ 0.19
CLN3-232ENST00000568443 OR4E1P0C645 316 aa16.24■□□□□ 0.19
CLN3-232ENST00000568443 DEFB1P60022 68 aa16.24■□□□□ 0.19
CLN3-232ENST00000568443 AKR1C1Q04828 323 aa16.24■□□□□ 0.19
CLN3-232ENST00000568443 GDF5OSQ5U4N7 250 aa16.24■□□□□ 0.19
CLN3-232ENST00000568443 FOXI2Q6ZQN5 318 aa16.24■□□□□ 0.19
CLN3-232ENST00000568443 RPP25LQ8N5L8 163 aaKnown RBP16.24■□□□□ 0.19
CLN3-232ENST00000568443 BPIFCQ8NFQ6 507 aa16.24■□□□□ 0.19
CLN3-232ENST00000568443 POLR2GP62487 172 aaKnown RBP eCLIP16.23■□□□□ 0.19
CLN3-232ENST00000568443 C4orf46Q504U0 113 aa16.23■□□□□ 0.19
CLN3-232ENST00000568443 SAV1Q9H4B6 383 aaPredicted RBP16.23■□□□□ 0.19
CLN3-232ENST00000568443 SLC45A2Q9UMX9 530 aa16.23■□□□□ 0.19
CLN3-232ENST00000568443 ISLRO14498 428 aa16.22■□□□□ 0.19
CLN3-232ENST00000568443 SOCS3O14543 225 aa16.22■□□□□ 0.19
CLN3-232ENST00000568443 DEDDO75618 318 aa16.22■□□□□ 0.19
CLN3-232ENST00000568443 ORM2P19652 201 aa16.22■□□□□ 0.19
CLN3-232ENST00000568443 GATA2P23769 480 aaPredicted RBP16.22■□□□□ 0.19
CLN3-232ENST00000568443 GALR1P47211 349 aa16.22■□□□□ 0.19
CLN3-232ENST00000568443 SAMD13Q5VXD3 122 aa16.22■□□□□ 0.19
CLN3-232ENST00000568443 ACOT7LQ6ZUV0 252 aa16.22■□□□□ 0.19
CLN3-232ENST00000568443 SDHCQ99643 169 aaPredicted RBP16.22■□□□□ 0.19
CLN3-232ENST00000568443 SLC25A22Q9H936 323 aa16.22■□□□□ 0.19
CLN3-232ENST00000568443 PSENENQ9NZ42 101 aa16.22■□□□□ 0.19
CLN3-232ENST00000568443 TRAV10A0A0B4J240 114 aa16.21■□□□□ 0.19
CLN3-232ENST00000568443 SMCO3A2RU48 225 aa16.21■□□□□ 0.19
CLN3-232ENST00000568443 ZNF98A6NK75 572 aa16.21■□□□□ 0.19
CLN3-232ENST00000568443 ANXA7P20073 488 aaKnown RBP16.21■□□□□ 0.19
CLN3-232ENST00000568443 S100A7P31151 101 aa16.21■□□□□ 0.19
CLN3-232ENST00000568443 MEOX2P50222 304 aa16.21■□□□□ 0.19
CLN3-232ENST00000568443 SPATA31B1PQ5VZV4 182 aa16.21■□□□□ 0.19
CLN3-232ENST00000568443 EBLN2Q6P2I7 272 aa16.21■□□□□ 0.19
CLN3-232ENST00000568443 GSG1LQ6UXU4 331 aa16.21■□□□□ 0.19
CLN3-232ENST00000568443 Q6ZTC4 211 aa16.21■□□□□ 0.19
CLN3-232ENST00000568443 OR4B1Q8NGF8 309 aa16.21■□□□□ 0.19
CLN3-232ENST00000568443 C16orf92Q96LL3 132 aa16.21■□□□□ 0.19
CLN3-232ENST00000568443 C7orf50Q9BRJ6 194 aaKnown RBP16.21■□□□□ 0.19
CLN3-232ENST00000568443 RSG1Q9BU20 258 aa16.21■□□□□ 0.19
CLN3-232ENST00000568443 TMEM147Q9BVK8 224 aa16.21■□□□□ 0.19
CLN3-232ENST00000568443 SSSCA1O60232 199 aa16.2■□□□□ 0.18
CLN3-232ENST00000568443 FXYD7P58549 80 aa16.2■□□□□ 0.18
CLN3-232ENST00000568443 TMEM182Q6ZP80 229 aaPredicted RBP16.2■□□□□ 0.18
CLN3-232ENST00000568443 TMEM144Q7Z5S9 345 aa16.2■□□□□ 0.18
CLN3-232ENST00000568443 OR4D5Q8NGN0 318 aa16.2■□□□□ 0.18
CLN3-232ENST00000568443 OR1B1Q8NGR6 318 aa16.2■□□□□ 0.18
CLN3-232ENST00000568443 CLUHP3Q96NS8 147 aa16.2■□□□□ 0.18
CLN3-232ENST00000568443 SLC25A32Q9H2D1 315 aa16.2■□□□□ 0.18
CLN3-232ENST00000568443 APLNQ9ULZ1 77 aa16.2■□□□□ 0.18
CLN3-232ENST00000568443 IL7P13232 177 aa16.19■□□□□ 0.18
CLN3-232ENST00000568443 SMIM8Q96KF7 97 aa16.19■□□□□ 0.18
CLN3-232ENST00000568443 GPR82Q96P67 336 aa16.19■□□□□ 0.18
CLN3-232ENST00000568443 RPRMQ9NS64 109 aa16.19■□□□□ 0.18
CLN3-232ENST00000568443 CELA1Q9UNI1 258 aa16.19■□□□□ 0.18
CLN3-232ENST00000568443 IL5P05113 134 aa16.18■□□□□ 0.18
CLN3-232ENST00000568443 BTCP35070 178 aa16.18■□□□□ 0.18
CLN3-232ENST00000568443 CNPY1Q3B7I2 92 aa16.18■□□□□ 0.18
CLN3-232ENST00000568443 ZNF705AQ6ZN79 300 aaPredicted RBP16.18■□□□□ 0.18
CLN3-232ENST00000568443 NEU1Q99519 415 aa16.18■□□□□ 0.18
CLN3-232ENST00000568443 IGHV3OR16-12A0A075B7B8 117 aa16.17■□□□□ 0.18
CLN3-232ENST00000568443 F6UB75 175 aa16.17■□□□□ 0.18
CLN3-232ENST00000568443 PAX9P55771 341 aa16.17■□□□□ 0.18
CLN3-232ENST00000568443 PSG9Q00887 426 aa16.17■□□□□ 0.18
CLN3-232ENST00000568443 IAH1Q2TAA2 248 aaPredicted RBP16.17■□□□□ 0.18
CLN3-232ENST00000568443 C12orf74Q32Q52 190 aa16.17■□□□□ 0.18
CLN3-232ENST00000568443 FAM78BQ5VT40 261 aa16.17■□□□□ 0.18
CLN3-232ENST00000568443 CYP2G1PQ6ZSU1 146 aa16.17■□□□□ 0.18
CLN3-232ENST00000568443 VPS13DQ5THJ4 4388 aa16.17■□□□□ 0.18
CLN3-232ENST00000568443 A0A0J9YX75 114 aa16.16■□□□□ 0.18
CLN3-232ENST00000568443 SMIM9A6NGZ8 99 aa16.16■□□□□ 0.18
CLN3-232ENST00000568443 ZNF705FA8MVS1 300 aaPredicted RBP16.16■□□□□ 0.18
CLN3-232ENST00000568443 SCGB1D2O95969 90 aa16.16■□□□□ 0.18
CLN3-232ENST00000568443 ZNF705DP0CH99 300 aaPredicted RBP16.16■□□□□ 0.18
CLN3-232ENST00000568443 ZNF705BP0CI00 300 aaPredicted RBP16.16■□□□□ 0.18
CLN3-232ENST00000568443 ZNF767PQ75MW2 155 aa16.16■□□□□ 0.18
CLN3-232ENST00000568443 ZNF709Q8N972 641 aa16.16■□□□□ 0.18
CLN3-232ENST00000568443 SLC35B3Q9H1N7 401 aa16.16■□□□□ 0.18
CLN3-232ENST00000568443 GSKIPQ9P0R6 139 aa16.16■□□□□ 0.18
CLN3-232ENST00000568443 DOK5Q9P104 306 aa16.16■□□□□ 0.18
CLN3-232ENST00000568443 TMEM189A5PLL7 270 aa16.15■□□□□ 0.18
CLN3-232ENST00000568443 PMS2P5A8MQ11 134 aa16.15■□□□□ 0.18
CLN3-232ENST00000568443 RAP2BP61225 183 aa16.15■□□□□ 0.18
CLN3-232ENST00000568443 RRAS2P62070 204 aaPredicted RBP16.15■□□□□ 0.18
CLN3-232ENST00000568443 MITD1Q8WV92 249 aa16.15■□□□□ 0.18
CLN3-232ENST00000568443 C20orf173Q96LM9 149 aa16.15■□□□□ 0.18
CLN3-232ENST00000568443 FRAS1Q86XX4 4008 aa16.14■□□□□ 0.17
CLN3-232ENST00000568443 IGHV4-4A0A075B6R2 117 aa16.14■□□□□ 0.17
CLN3-232ENST00000568443 DEFB131BA0A096LNP1 70 aa16.14■□□□□ 0.17
CLN3-232ENST00000568443 HYPMO75409 117 aa16.14■□□□□ 0.17
CLN3-232ENST00000568443 METTL15P1P0C7V9 234 aa16.14■□□□□ 0.17
CLN3-232ENST00000568443 EMP1P54849 157 aa16.14■□□□□ 0.17
CLN3-232ENST00000568443 SELENOTP62341 195 aa16.14■□□□□ 0.17
CLN3-232ENST00000568443 DLK1P80370 383 aa16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms