RNA–Protein interactions for RNA: ENST00000568239.1

SMG1-215, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 1 (best)

Gene SMG1, Length 2,978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-215ENST00000568239 CLEC3BP05452 202 aa5.53□□□□□ -1.52
SMG1-215ENST00000568239 HIST1H1BP16401 226 aaKnown RBP5.53□□□□□ -1.52
SMG1-215ENST00000568239 HNF1AP20823 631 aa5.53□□□□□ -1.52
SMG1-215ENST00000568239 FCGR2BP31994 310 aaPredicted RBP5.53□□□□□ -1.52
SMG1-215ENST00000568239 RANP62826 216 aaKnown RBP5.53□□□□□ -1.52
SMG1-215ENST00000568239 Q6ZS46 218 aa5.53□□□□□ -1.52
SMG1-215ENST00000568239 IL17RELQ6ZVW7 336 aa5.53□□□□□ -1.52
SMG1-215ENST00000568239 Q8WTZ3 238 aa5.53□□□□□ -1.52
SMG1-215ENST00000568239 RNF125Q96EQ8 232 aa5.53□□□□□ -1.52
SMG1-215ENST00000568239 SDF2L1Q9HCN8 221 aa5.53□□□□□ -1.52
SMG1-215ENST00000568239 NAT8Q9UHE5 227 aa5.53□□□□□ -1.52
SMG1-215ENST00000568239 URGCP-MRPS24S4R325 110 aa5.53□□□□□ -1.52
SMG1-215ENST00000568239 PGPEP1LA6NFU8 196 aa5.52□□□□□ -1.53
SMG1-215ENST00000568239 M0QZK8 103 aa5.52□□□□□ -1.53
SMG1-215ENST00000568239 SCGB2A1O75556 95 aa5.52□□□□□ -1.53
SMG1-215ENST00000568239 CRYBB3P26998 211 aa5.52□□□□□ -1.53
SMG1-215ENST00000568239 PNRC1Q12796 327 aaPredicted RBP5.52□□□□□ -1.53
SMG1-215ENST00000568239 CLEC19AQ6UXS0 136 aa5.52□□□□□ -1.53
SMG1-215ENST00000568239 LURAP1LQ8IV03 231 aa5.52□□□□□ -1.53
SMG1-215ENST00000568239 TMEM68Q96MH6 324 aa5.52□□□□□ -1.53
SMG1-215ENST00000568239 DUX5Q96PT3 197 aa5.52□□□□□ -1.53
SMG1-215ENST00000568239 TXNDC17Q9BRA2 123 aa5.52□□□□□ -1.53
SMG1-215ENST00000568239 SLC25A39Q9BZJ4 359 aaPredicted RBP5.52□□□□□ -1.53
SMG1-215ENST00000568239 MTORP42345 2549 aa5.52□□□□□ -1.53
SMG1-215ENST00000568239 F8W735 103 aaPredicted RBP5.52□□□□□ -1.53
SMG1-215ENST00000568239 OR2C1O95371 312 aa5.52□□□□□ -1.53
SMG1-215ENST00000568239 TOMM40O96008 361 aa5.52□□□□□ -1.53
SMG1-215ENST00000568239 TRGV3P03979 118 aa5.52□□□□□ -1.53
SMG1-215ENST00000568239 FAM24BQ8N5W8 94 aa5.52□□□□□ -1.53
SMG1-215ENST00000568239 ZNF491Q8N8L2 437 aa5.52□□□□□ -1.53
SMG1-215ENST00000568239 NECAP1Q8NC96 275 aa5.52□□□□□ -1.53
SMG1-215ENST00000568239 CHRDL1Q9BU40 450 aa5.52□□□□□ -1.53
SMG1-215ENST00000568239 RPH3ALQ9UNE2 315 aa5.52□□□□□ -1.53
SMG1-215ENST00000568239 GGTLC3B5MD39 225 aa5.52□□□□□ -1.53
SMG1-215ENST00000568239 CTSGP08311 255 aa5.52□□□□□ -1.53
SMG1-215ENST00000568239 TPPP2P59282 170 aa5.52□□□□□ -1.53
SMG1-215ENST00000568239 C4orf48Q5BLP8 95 aa5.52□□□□□ -1.53
SMG1-215ENST00000568239 STXBP6Q8NFX7 210 aa5.52□□□□□ -1.53
SMG1-215ENST00000568239 NBEAP1P0C6P0 100 aa5.51□□□□□ -1.53
SMG1-215ENST00000568239 PF4V1P10720 104 aa5.51□□□□□ -1.53
SMG1-215ENST00000568239 IER3P46695 156 aa5.51□□□□□ -1.53
SMG1-215ENST00000568239 PLP1P60201 277 aa5.51□□□□□ -1.53
SMG1-215ENST00000568239 YPEL3P61236 119 aaPredicted RBP5.51□□□□□ -1.53
SMG1-215ENST00000568239 RPL23P62829 140 aaKnown RBP5.51□□□□□ -1.53
SMG1-215ENST00000568239 ATP5G2Q06055 141 aa5.51□□□□□ -1.53
SMG1-215ENST00000568239 USF2Q15853 346 aaPredicted RBP5.51□□□□□ -1.53
SMG1-215ENST00000568239 RNF212Q495C1 297 aa5.51□□□□□ -1.53
SMG1-215ENST00000568239 LCNL1Q6ZST4 164 aa5.51□□□□□ -1.53
SMG1-215ENST00000568239 ZNF329Q86UD4 541 aa5.51□□□□□ -1.53
SMG1-215ENST00000568239 VN1R17PQ8TDU5 208 aa5.51□□□□□ -1.53
SMG1-215ENST00000568239 EEF1AKMT3Q96AZ1 226 aa5.51□□□□□ -1.53
SMG1-215ENST00000568239 FXYD5Q96DB9 178 aa5.51□□□□□ -1.53
SMG1-215ENST00000568239 A0A1W2PRE2 83 aa5.51□□□□□ -1.53
SMG1-215ENST00000568239 IGHG2P01859 326 aa5.51□□□□□ -1.53
SMG1-215ENST00000568239 ZNF600Q6ZNG1 722 aa5.51□□□□□ -1.53
SMG1-215ENST00000568239 ZNF502Q8TBZ5 544 aa5.51□□□□□ -1.53
SMG1-215ENST00000568239 MRPL27Q9P0M9 148 aaKnown RBP5.51□□□□□ -1.53
SMG1-215ENST00000568239 PDZD2O15018 2839 aa5.5□□□□□ -1.53
SMG1-215ENST00000568239 TRBV9A0A0B4J1U6 114 aa5.5□□□□□ -1.53
SMG1-215ENST00000568239 HELTA6NFD8 242 aa5.5□□□□□ -1.53
SMG1-215ENST00000568239 AP4M1O00189 453 aa5.5□□□□□ -1.53
SMG1-215ENST00000568239 HOXA3O43365 443 aaPredicted RBP5.5□□□□□ -1.53
SMG1-215ENST00000568239 IGHV3-11P01762 117 aa5.5□□□□□ -1.53
SMG1-215ENST00000568239 ADMP35318 185 aa5.5□□□□□ -1.53
SMG1-215ENST00000568239 RPL35P42766 123 aaKnown RBP5.5□□□□□ -1.53
SMG1-215ENST00000568239 ZNF343Q6P1L6 599 aa5.5□□□□□ -1.53
SMG1-215ENST00000568239 ZNF48Q96MX3 618 aaPredicted RBP5.5□□□□□ -1.53
SMG1-215ENST00000568239 ELOVL1Q9BW60 279 aa5.5□□□□□ -1.53
SMG1-215ENST00000568239 PRELID1Q9Y255 219 aa5.5□□□□□ -1.53
SMG1-215ENST00000568239 TRBV20OR9-2A0A075B6H5 130 aa5.5□□□□□ -1.53
SMG1-215ENST00000568239 PGPA6NDG6 321 aa5.5□□□□□ -1.53
SMG1-215ENST00000568239 B4DEV8 164 aa5.5□□□□□ -1.53
SMG1-215ENST00000568239 PPP5D1E7EU14 171 aa5.5□□□□□ -1.53
SMG1-215ENST00000568239 MT-ND4LP03901 98 aa5.5□□□□□ -1.53
SMG1-215ENST00000568239 IGF1P05019 195 aa5.5□□□□□ -1.53
SMG1-215ENST00000568239 SLC25A5P05141 298 aaKnown RBP5.5□□□□□ -1.53
SMG1-215ENST00000568239 PRB4P10163 310 aaPredicted RBP5.5□□□□□ -1.53
SMG1-215ENST00000568239 SRP14P37108 136 aaKnown RBP5.5□□□□□ -1.53
SMG1-215ENST00000568239 GNG5P63218 68 aa5.5□□□□□ -1.53
SMG1-215ENST00000568239 BPIFA4PQ86YQ2 179 aa5.5□□□□□ -1.53
SMG1-215ENST00000568239 SGK494Q96LW2 274 aa5.5□□□□□ -1.53
SMG1-215ENST00000568239 LINC00479Q96M42 142 aa5.5□□□□□ -1.53
SMG1-215ENST00000568239 CCDC140Q96MF4 163 aa5.5□□□□□ -1.53
SMG1-215ENST00000568239 TXN2Q99757 166 aa5.5□□□□□ -1.53
SMG1-215ENST00000568239 IGHV3OR16-13A0A075B7E8 117 aa5.49□□□□□ -1.53
SMG1-215ENST00000568239 IGHV3-74A0A0B4J1X5 117 aa5.49□□□□□ -1.53
SMG1-215ENST00000568239 WI2-2373I1.2A0A1W2PRP0 233 aa5.49□□□□□ -1.53
SMG1-215ENST00000568239 ZNF98A6NK75 572 aa5.49□□□□□ -1.53
SMG1-215ENST00000568239 GP9P14770 177 aa5.49□□□□□ -1.53
SMG1-215ENST00000568239 S100A7AQ86SG5 101 aa5.49□□□□□ -1.53
SMG1-215ENST00000568239 LINC01551Q86U37 167 aa5.49□□□□□ -1.53
SMG1-215ENST00000568239 C15orf54Q8N8G6 183 aa5.49□□□□□ -1.53
SMG1-215ENST00000568239 OR4F17Q8NGA8 305 aa5.49□□□□□ -1.53
SMG1-215ENST00000568239 OR5R1Q8NH85 324 aa5.49□□□□□ -1.53
SMG1-215ENST00000568239 SHANK2-AS3Q9BTD1 123 aa5.49□□□□□ -1.53
SMG1-215ENST00000568239 KLK15Q9H2R5 256 aa5.49□□□□□ -1.53
SMG1-215ENST00000568239 VPREB3Q9UKI3 123 aa5.49□□□□□ -1.53
SMG1-215ENST00000568239 ARL2-SNX15V9GYD0 113 aa5.49□□□□□ -1.53
SMG1-215ENST00000568239 SETD2Q9BYW2 2564 aaPredicted RBP5.49□□□□□ -1.53
SMG1-215ENST00000568239 TRBV7-1A0A0A6YYK4 115 aa5.49□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms