RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 JTBO76095 146 aa13.69□□□□□ -0.22
CLN3-227ENST00000567495 NUTF2P61970 127 aaKnown RBP13.69□□□□□ -0.22
CLN3-227ENST00000567495 SELENOTP62341 195 aa13.69□□□□□ -0.22
CLN3-227ENST00000567495 S100A7AQ86SG5 101 aa13.69□□□□□ -0.22
CLN3-227ENST00000567495 PTTG2Q9NZH5 202 aa13.69□□□□□ -0.22
CLN3-227ENST00000567495 CXorf65A6NEN9 183 aa13.68□□□□□ -0.22
CLN3-227ENST00000567495 PMS2P5A8MQ11 134 aa13.68□□□□□ -0.22
CLN3-227ENST00000567495 MBPP02686 304 aaPredicted RBP13.68□□□□□ -0.22
CLN3-227ENST00000567495 GALR1P47211 349 aa13.68□□□□□ -0.22
CLN3-227ENST00000567495 PSMB3P49720 205 aa13.68□□□□□ -0.22
CLN3-227ENST00000567495 MEOX2P50222 304 aa13.68□□□□□ -0.22
CLN3-227ENST00000567495 C12orf45Q8N5I9 185 aaPredicted RBP13.68□□□□□ -0.22
CLN3-227ENST00000567495 GPR82Q96P67 336 aa13.68□□□□□ -0.22
CLN3-227ENST00000567495 TMEM147Q9BVK8 224 aa13.68□□□□□ -0.22
CLN3-227ENST00000567495 GGACTQ9BVM4 153 aa13.68□□□□□ -0.22
CLN3-227ENST00000567495 C11orf68Q9H3H3 251 aaKnown RBP13.68□□□□□ -0.22
CLN3-227ENST00000567495 NPVFQ9HCQ7 196 aa13.68□□□□□ -0.22
CLN3-227ENST00000567495 MGAT4CQ9UBM8 478 aa13.68□□□□□ -0.22
CLN3-227ENST00000567495 RCL1Q9Y2P8 373 aaKnown RBP13.68□□□□□ -0.22
CLN3-227ENST00000567495 NUPR2A6NF83 97 aa13.67□□□□□ -0.22
CLN3-227ENST00000567495 FAM25EA8MYX2 175 aa13.67□□□□□ -0.22
CLN3-227ENST00000567495 IL5P05113 134 aa13.67□□□□□ -0.22
CLN3-227ENST00000567495 METTL15P1P0C7V9 234 aa13.67□□□□□ -0.22
CLN3-227ENST00000567495 ORM2P19652 201 aa13.67□□□□□ -0.22
CLN3-227ENST00000567495 SEC22CQ9BRL7 303 aa13.67□□□□□ -0.22
CLN3-227ENST00000567495 C1QTNF4Q9BXJ3 329 aa13.67□□□□□ -0.22
CLN3-227ENST00000567495 TBC1D24Q9ULP9 559 aa13.67□□□□□ -0.22
CLN3-227ENST00000567495 RYR3Q15413 4870 aa13.66□□□□□ -0.22
CLN3-227ENST00000567495 C7orf66A4D0T2 115 aa13.66□□□□□ -0.22
CLN3-227ENST00000567495 C5orf51A6NDU8 294 aa13.66□□□□□ -0.22
CLN3-227ENST00000567495 K7EPK0 472 aa13.66□□□□□ -0.22
CLN3-227ENST00000567495 L7N2F9 121 aa13.66□□□□□ -0.22
CLN3-227ENST00000567495 ISLRO14498 428 aa13.66□□□□□ -0.22
CLN3-227ENST00000567495 UPK1BO75841 260 aa13.66□□□□□ -0.22
CLN3-227ENST00000567495 GIG44P09565 113 aaPredicted RBP13.66□□□□□ -0.22
CLN3-227ENST00000567495 VAMP2P63027 116 aa13.66□□□□□ -0.22
CLN3-227ENST00000567495 SPATA31B1PQ5VZV4 182 aa13.66□□□□□ -0.22
CLN3-227ENST00000567495 CYP2G1PQ6ZSU1 146 aa13.66□□□□□ -0.22
CLN3-227ENST00000567495 MFFQ9GZY8 342 aa13.66□□□□□ -0.22
CLN3-227ENST00000567495 RNF24Q9Y225 148 aa13.66□□□□□ -0.22
CLN3-227ENST00000567495 CSMD3Q7Z407 3707 aa13.65□□□□□ -0.22
CLN3-227ENST00000567495 ZNF98A6NK75 572 aa13.65□□□□□ -0.22
CLN3-227ENST00000567495 H3BMM0 161 aa13.65□□□□□ -0.22
CLN3-227ENST00000567495 DEDDO75618 318 aa13.65□□□□□ -0.22
CLN3-227ENST00000567495 HLA-DRB4P13762 266 aa13.65□□□□□ -0.22
CLN3-227ENST00000567495 PLP1P60201 277 aa13.65□□□□□ -0.22
CLN3-227ENST00000567495 RAP2BP61225 183 aa13.65□□□□□ -0.22
CLN3-227ENST00000567495 TEPPQ6URK8 271 aa13.65□□□□□ -0.22
CLN3-227ENST00000567495 OR1B1Q8NGR6 318 aa13.65□□□□□ -0.22
CLN3-227ENST00000567495 C2orf50Q96LR7 162 aa13.65□□□□□ -0.22
CLN3-227ENST00000567495 LINC00052Q96N35 136 aa13.65□□□□□ -0.22
CLN3-227ENST00000567495 HLA-DRB4X5D2U9 266 aa13.65□□□□□ -0.22
CLN3-227ENST00000567495 STARD9Q9P2P6 4700 aa13.65□□□□□ -0.22
CLN3-227ENST00000567495 SOCS3O14543 225 aa13.64□□□□□ -0.23
CLN3-227ENST00000567495 CCSO14618 274 aa13.64□□□□□ -0.23
CLN3-227ENST00000567495 HYPMO75409 117 aa13.64□□□□□ -0.23
CLN3-227ENST00000567495 PVALBP20472 110 aaPredicted RBP13.64□□□□□ -0.23
CLN3-227ENST00000567495 GATA2P23769 480 aaPredicted RBP13.64□□□□□ -0.23
CLN3-227ENST00000567495 RRAS2P62070 204 aaPredicted RBP13.64□□□□□ -0.23
CLN3-227ENST00000567495 EWSR1Q01844 656 aaKnown RBP eCLIP13.64□□□□□ -0.23
CLN3-227ENST00000567495 CEMP1Q6PRD7 247 aaPredicted RBP13.64□□□□□ -0.23
CLN3-227ENST00000567495 GSG1LQ6UXU4 331 aa13.64□□□□□ -0.23
CLN3-227ENST00000567495 TMEM182Q6ZP80 229 aaPredicted RBP13.64□□□□□ -0.23
CLN3-227ENST00000567495 FOXI2Q6ZQN5 318 aa13.64□□□□□ -0.23
CLN3-227ENST00000567495 ENKURQ8TC29 256 aa13.64□□□□□ -0.23
CLN3-227ENST00000567495 CLUHP3Q96NS8 147 aa13.64□□□□□ -0.23
CLN3-227ENST00000567495 SLC25A22Q9H936 323 aa13.64□□□□□ -0.23
CLN3-227ENST00000567495 GPN1Q9HCN4 374 aaPredicted RBP13.64□□□□□ -0.23
CLN3-227ENST00000567495 KLK5Q9Y337 293 aaPredicted RBP13.64□□□□□ -0.23
CLN3-227ENST00000567495 LINC00869P0C866 280 aa13.63□□□□□ -0.23
CLN3-227ENST00000567495 PMS2P11Q13670 270 aa13.63□□□□□ -0.23
CLN3-227ENST00000567495 PXDC1Q5TGL8 231 aa13.63□□□□□ -0.23
CLN3-227ENST00000567495 RSG1Q9BU20 258 aa13.63□□□□□ -0.23
CLN3-227ENST00000567495 BATF3Q9NR55 127 aa13.63□□□□□ -0.23
CLN3-227ENST00000567495 HIGD1AQ9Y241 93 aa13.63□□□□□ -0.23
CLN3-227ENST00000567495 DYNC2H1Q8NCM8 4307 aaKnown RBP13.62□□□□□ -0.23
CLN3-227ENST00000567495 ZNF705EA8MWA4 302 aaPredicted RBP13.62□□□□□ -0.23
CLN3-227ENST00000567495 CCNKO75909 580 aa13.62□□□□□ -0.23
CLN3-227ENST00000567495 MIFP14174 115 aa13.62□□□□□ -0.23
CLN3-227ENST00000567495 RPL7P18124 248 aaKnown RBP13.62□□□□□ -0.23
CLN3-227ENST00000567495 C4BPBP20851 252 aa13.62□□□□□ -0.23
CLN3-227ENST00000567495 ZNF546Q86UE3 836 aa13.62□□□□□ -0.23
CLN3-227ENST00000567495 C11orf45Q8TAV5 145 aa13.62□□□□□ -0.23
CLN3-227ENST00000567495 SHANK2-AS3Q9BTD1 123 aa13.62□□□□□ -0.23
CLN3-227ENST00000567495 SLC25A39Q9BZJ4 359 aaPredicted RBP13.62□□□□□ -0.23
CLN3-227ENST00000567495 SLC25A32Q9H2D1 315 aa13.62□□□□□ -0.23
CLN3-227ENST00000567495 SAV1Q9H4B6 383 aaPredicted RBP13.62□□□□□ -0.23
CLN3-227ENST00000567495 LSM5Q9Y4Y9 91 aaKnown RBP13.62□□□□□ -0.23
CLN3-227ENST00000567495 BCAP31P51572 246 aa13.61□□□□□ -0.23
CLN3-227ENST00000567495 CAV2P51636 162 aa13.61□□□□□ -0.23
CLN3-227ENST00000567495 RAB31Q13636 194 aa13.61□□□□□ -0.23
CLN3-227ENST00000567495 EBLN2Q6P2I7 272 aa13.61□□□□□ -0.23
CLN3-227ENST00000567495 CSNK1G2-AS1Q8NCQ2 148 aa13.61□□□□□ -0.23
CLN3-227ENST00000567495 C16orf92Q96LL3 132 aa13.61□□□□□ -0.23
CLN3-227ENST00000567495 RPRMQ9NS64 109 aa13.61□□□□□ -0.23
CLN3-227ENST00000567495 H3BRN7 92 aa13.6□□□□□ -0.23
CLN3-227ENST00000567495 GOSR2O14653 212 aa13.6□□□□□ -0.23
CLN3-227ENST00000567495 OR5G3P0C626 314 aa13.6□□□□□ -0.23
CLN3-227ENST00000567495 ARL16Q0P5N6 197 aa13.6□□□□□ -0.23
CLN3-227ENST00000567495 Q8NAQ8 132 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms