RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 GATA2P23769 480 aaPredicted RBP10.74□□□□□ -0.69
CLN3-213ENST00000565047 LYZP61626 148 aa10.74□□□□□ -0.69
CLN3-213ENST00000565047 RPP30P78346 268 aaKnown RBP10.74□□□□□ -0.69
CLN3-213ENST00000565047 SMIM8Q96KF7 97 aa10.74□□□□□ -0.69
CLN3-213ENST00000565047 MFFQ9GZY8 342 aa10.74□□□□□ -0.69
CLN3-213ENST00000565047 SLC45A2Q9UMX9 530 aa10.74□□□□□ -0.69
CLN3-213ENST00000565047 DNAH2Q9P225 4427 aa10.73□□□□□ -0.69
CLN3-213ENST00000565047 LINC00854A0A1B0GVQ3 168 aa10.73□□□□□ -0.69
CLN3-213ENST00000565047 LY6G6CO95867 125 aa10.73□□□□□ -0.69
CLN3-213ENST00000565047 CFDP00746 253 aaPredicted RBP10.73□□□□□ -0.69
CLN3-213ENST00000565047 FABP1P07148 127 aa10.73□□□□□ -0.69
CLN3-213ENST00000565047 TMEM14EPQ6UXP3 125 aa10.73□□□□□ -0.69
CLN3-213ENST00000565047 ACOT7LQ6ZUV0 252 aa10.73□□□□□ -0.69
CLN3-213ENST00000565047 TMEM144Q7Z5S9 345 aa10.73□□□□□ -0.69
CLN3-213ENST00000565047 COQ8AQ8NI60 647 aa10.73□□□□□ -0.69
CLN3-213ENST00000565047 MITD1Q8WV92 249 aa10.73□□□□□ -0.69
CLN3-213ENST00000565047 CLUHP3Q96NS8 147 aa10.73□□□□□ -0.69
CLN3-213ENST00000565047 SAV1Q9H4B6 383 aaPredicted RBP10.73□□□□□ -0.69
CLN3-213ENST00000565047 FBXL17Q9UF56 701 aa10.73□□□□□ -0.69
CLN3-213ENST00000565047 PFDN2Q9UHV9 154 aa10.73□□□□□ -0.69
CLN3-213ENST00000565047 PAIP2BQ9ULR5 123 aaKnown RBP10.73□□□□□ -0.69
CLN3-213ENST00000565047 STRAPQ9Y3F4 350 aaKnown RBP10.73□□□□□ -0.69
CLN3-213ENST00000565047 CCNKO75909 580 aa10.72□□□□□ -0.69
CLN3-213ENST00000565047 INPP1P49441 399 aa10.72□□□□□ -0.69
CLN3-213ENST00000565047 PSMB3P49720 205 aa10.72□□□□□ -0.69
CLN3-213ENST00000565047 ZNF705AQ6ZN79 300 aaPredicted RBP10.72□□□□□ -0.69
CLN3-213ENST00000565047 ZNF709Q8N972 641 aa10.72□□□□□ -0.69
CLN3-213ENST00000565047 SLC25A32Q9H2D1 315 aa10.72□□□□□ -0.69
CLN3-213ENST00000565047 NDUFA13Q9P0J0 144 aa10.72□□□□□ -0.69
CLN3-213ENST00000565047 TBC1D24Q9ULP9 559 aa10.72□□□□□ -0.69
CLN3-213ENST00000565047 ZNF98A6NK75 572 aa10.71□□□□□ -0.69
CLN3-213ENST00000565047 CENPXA8MT69 81 aa10.71□□□□□ -0.69
CLN3-213ENST00000565047 A8MTW9 85 aa10.71□□□□□ -0.69
CLN3-213ENST00000565047 CNPY1Q3B7I2 92 aa10.71□□□□□ -0.69
CLN3-213ENST00000565047 LGALS9CQ6DKI2 356 aa10.71□□□□□ -0.69
CLN3-213ENST00000565047 FOXI2Q6ZQN5 318 aa10.71□□□□□ -0.69
CLN3-213ENST00000565047 C20orf173Q96LM9 149 aa10.71□□□□□ -0.69
CLN3-213ENST00000565047 PSENENQ9NZ42 101 aa10.71□□□□□ -0.69
CLN3-213ENST00000565047 XCL2Q9UBD3 114 aa10.71□□□□□ -0.69
CLN3-213ENST00000565047 RCL1Q9Y2P8 373 aaKnown RBP10.71□□□□□ -0.69
CLN3-213ENST00000565047 ZNF705FA8MVS1 300 aaPredicted RBP10.7□□□□□ -0.7
CLN3-213ENST00000565047 ISLRO14498 428 aa10.7□□□□□ -0.7
CLN3-213ENST00000565047 IFNA21P01568 189 aa10.7□□□□□ -0.7
CLN3-213ENST00000565047 ZNF705DP0CH99 300 aaPredicted RBP10.7□□□□□ -0.7
CLN3-213ENST00000565047 ZNF705BP0CI00 300 aaPredicted RBP10.7□□□□□ -0.7
CLN3-213ENST00000565047 PLP1P60201 277 aa10.7□□□□□ -0.7
CLN3-213ENST00000565047 C4orf46Q504U0 113 aa10.7□□□□□ -0.7
CLN3-213ENST00000565047 OR8I2Q8N0Y5 310 aa10.7□□□□□ -0.7
CLN3-213ENST00000565047 ZBTB8BQ8NAP8 495 aaPredicted RBP10.7□□□□□ -0.7
CLN3-213ENST00000565047 LINC00052Q96N35 136 aa10.7□□□□□ -0.7
CLN3-213ENST00000565047 NEU1Q99519 415 aa10.7□□□□□ -0.7
CLN3-213ENST00000565047 APLNQ9ULZ1 77 aa10.7□□□□□ -0.7
CLN3-213ENST00000565047 FAT2Q9NYQ8 4349 aa10.7□□□□□ -0.7
CLN3-213ENST00000565047 A0A0J9YX75 114 aa10.69□□□□□ -0.7
CLN3-213ENST00000565047 FNDC10F2Z333 226 aa10.69□□□□□ -0.7
CLN3-213ENST00000565047 K7EPK0 472 aa10.69□□□□□ -0.7
CLN3-213ENST00000565047 LYRM1O43325 122 aa10.69□□□□□ -0.7
CLN3-213ENST00000565047 SSSCA1O60232 199 aa10.69□□□□□ -0.7
CLN3-213ENST00000565047 HLA-DMBP28068 263 aa10.69□□□□□ -0.7
CLN3-213ENST00000565047 TAS2R30P59541 319 aa10.69□□□□□ -0.7
CLN3-213ENST00000565047 NUTF2P61970 127 aaKnown RBP10.69□□□□□ -0.7
CLN3-213ENST00000565047 ARL16Q0P5N6 197 aa10.69□□□□□ -0.7
CLN3-213ENST00000565047 IAH1Q2TAA2 248 aaPredicted RBP10.69□□□□□ -0.7
CLN3-213ENST00000565047 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa10.69□□□□□ -0.7
CLN3-213ENST00000565047 CYP2G1PQ6ZSU1 146 aa10.69□□□□□ -0.7
CLN3-213ENST00000565047 RPP25LQ8N5L8 163 aaKnown RBP10.69□□□□□ -0.7
CLN3-213ENST00000565047 BPIFCQ8NFQ6 507 aa10.69□□□□□ -0.7
CLN3-213ENST00000565047 C2CD4CQ8TF44 421 aa10.69□□□□□ -0.7
CLN3-213ENST00000565047 C1QTNF4Q9BXJ3 329 aa10.69□□□□□ -0.7
CLN3-213ENST00000565047 C20orf85Q9H1P6 137 aa10.69□□□□□ -0.7
CLN3-213ENST00000565047 CELA1Q9UNI1 258 aa10.69□□□□□ -0.7
CLN3-213ENST00000565047 TRAV8-2A0A0B4J237 113 aa10.68□□□□□ -0.7
CLN3-213ENST00000565047 C11orf94C9JXX5 98 aa10.68□□□□□ -0.7
CLN3-213ENST00000565047 F6UB75 175 aa10.68□□□□□ -0.7
CLN3-213ENST00000565047 H3BRN7 92 aa10.68□□□□□ -0.7
CLN3-213ENST00000565047 MBPP02686 304 aaPredicted RBP10.68□□□□□ -0.7
CLN3-213ENST00000565047 TCRBP04435 133 aa10.68□□□□□ -0.7
CLN3-213ENST00000565047 METTL15P1P0C7V9 234 aa10.68□□□□□ -0.7
CLN3-213ENST00000565047 ORM2P19652 201 aa10.68□□□□□ -0.7
CLN3-213ENST00000565047 ID1P41134 155 aa10.68□□□□□ -0.7
CLN3-213ENST00000565047 TCTAP57738 103 aa10.68□□□□□ -0.7
CLN3-213ENST00000565047 DLK1P80370 383 aa10.68□□□□□ -0.7
CLN3-213ENST00000565047 PRR20EP86478 221 aa10.68□□□□□ -0.7
CLN3-213ENST00000565047 PRR20CP86479 221 aa10.68□□□□□ -0.7
CLN3-213ENST00000565047 PRR20DP86480 221 aa10.68□□□□□ -0.7
CLN3-213ENST00000565047 PRR20BP86481 221 aa10.68□□□□□ -0.7
CLN3-213ENST00000565047 PRR20AP86496 221 aa10.68□□□□□ -0.7
CLN3-213ENST00000565047 C12orf74Q32Q52 190 aa10.68□□□□□ -0.7
CLN3-213ENST00000565047 SPATA31B1PQ5VZV4 182 aa10.68□□□□□ -0.7
CLN3-213ENST00000565047 AMTNQ6UX39 209 aa10.68□□□□□ -0.7
CLN3-213ENST00000565047 Q6ZTC4 211 aa10.68□□□□□ -0.7
CLN3-213ENST00000565047 RSG1Q9BU20 258 aa10.68□□□□□ -0.7
CLN3-213ENST00000565047 C11orf1Q9H5F2 150 aa10.68□□□□□ -0.7
CLN3-213ENST00000565047 C7orf66A4D0T2 115 aa10.67□□□□□ -0.7
CLN3-213ENST00000565047 TSC22D2O75157 780 aa10.67□□□□□ -0.7
CLN3-213ENST00000565047 MEOX2P50222 304 aa10.67□□□□□ -0.7
CLN3-213ENST00000565047 AKR1C1Q04828 323 aa10.67□□□□□ -0.7
CLN3-213ENST00000565047 FAM78BQ5VT40 261 aa10.67□□□□□ -0.7
CLN3-213ENST00000565047 SAMD13Q5VXD3 122 aa10.67□□□□□ -0.7
CLN3-213ENST00000565047 PATE2Q6UY27 113 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 80.2 ms