RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 GGTLC3B5MD39 225 aa5.91□□□□□ -1.46
VPS39-204ENST00000561818 GGCTO75223 188 aaKnown RBP5.91□□□□□ -1.46
VPS39-204ENST00000561818 PRB1P04280 392 aa5.91□□□□□ -1.46
VPS39-204ENST00000561818 CRYBA1P05813 215 aa5.91□□□□□ -1.46
VPS39-204ENST00000561818 SUMO1P63165 101 aaKnown RBP5.91□□□□□ -1.46
VPS39-204ENST00000561818 RHOGP84095 191 aa5.91□□□□□ -1.46
VPS39-204ENST00000561818 ECSCRQ19T08 205 aa5.91□□□□□ -1.46
VPS39-204ENST00000561818 C15orf32Q32M92 178 aa5.91□□□□□ -1.46
VPS39-204ENST00000561818 CENPWQ5EE01 88 aa5.91□□□□□ -1.46
VPS39-204ENST00000561818 Q5PR19 223 aa5.91□□□□□ -1.46
VPS39-204ENST00000561818 Q6AWC8 147 aa5.91□□□□□ -1.46
VPS39-204ENST00000561818 ZNF343Q6P1L6 599 aa5.91□□□□□ -1.46
VPS39-204ENST00000561818 TEX38Q6PEX7 206 aa5.91□□□□□ -1.46
VPS39-204ENST00000561818 ZNF491Q8N8L2 437 aa5.91□□□□□ -1.46
VPS39-204ENST00000561818 TMEM75Q8N9X5 138 aa5.91□□□□□ -1.46
VPS39-204ENST00000561818 OR4B1Q8NGF8 309 aa5.91□□□□□ -1.46
VPS39-204ENST00000561818 ZNF502Q8TBZ5 544 aa5.91□□□□□ -1.46
VPS39-204ENST00000561818 METTL26Q96S19 204 aa5.91□□□□□ -1.46
VPS39-204ENST00000561818 PYGO2Q9BRQ0 406 aa5.91□□□□□ -1.46
VPS39-204ENST00000561818 NPFFR1Q9GZQ6 430 aa5.91□□□□□ -1.46
VPS39-204ENST00000561818 EPDR1Q9UM22 224 aa5.91□□□□□ -1.46
VPS39-204ENST00000561818 USP9XQ93008 2570 aaPredicted RBP5.91□□□□□ -1.46
VPS39-204ENST00000561818 SPTAN1Q13813 2472 aaKnown RBP5.9□□□□□ -1.46
VPS39-204ENST00000561818 NBEAQ8NFP9 2946 aa5.9□□□□□ -1.46
VPS39-204ENST00000561818 TRBV19A0A075B6N1 114 aa5.9□□□□□ -1.46
VPS39-204ENST00000561818 A0A087X0K7 114 aa5.9□□□□□ -1.46
VPS39-204ENST00000561818 A0A096LNT2 108 aa5.9□□□□□ -1.46
VPS39-204ENST00000561818 A0A0U1RQK1 487 aa5.9□□□□□ -1.46
VPS39-204ENST00000561818 ZNF98A6NK75 572 aa5.9□□□□□ -1.46
VPS39-204ENST00000561818 H3BUX3 64 aa5.9□□□□□ -1.46
VPS39-204ENST00000561818 NDUFA4O00483 81 aa5.9□□□□□ -1.46
VPS39-204ENST00000561818 OR2J3O76001 311 aa5.9□□□□□ -1.46
VPS39-204ENST00000561818 TGFAP01135 160 aa5.9□□□□□ -1.46
VPS39-204ENST00000561818 GCGP01275 180 aa5.9□□□□□ -1.46
VPS39-204ENST00000561818 SLC25A5P05141 298 aaKnown RBP5.9□□□□□ -1.46
VPS39-204ENST00000561818 GATA2P23769 480 aaPredicted RBP5.9□□□□□ -1.46
VPS39-204ENST00000561818 CRYBB3P26998 211 aa5.9□□□□□ -1.46
VPS39-204ENST00000561818 MYCNOSP40205 109 aa5.9□□□□□ -1.46
VPS39-204ENST00000561818 RPS10P46783 165 aaKnown RBP5.9□□□□□ -1.46
VPS39-204ENST00000561818 DLX1P56177 255 aa5.9□□□□□ -1.46
VPS39-204ENST00000561818 ERVFC1-1P60608 527 aa5.9□□□□□ -1.46
VPS39-204ENST00000561818 NDPQ00604 133 aa5.9□□□□□ -1.46
VPS39-204ENST00000561818 MLANAQ16655 118 aa5.9□□□□□ -1.46
VPS39-204ENST00000561818 RPEL1Q2QD12 228 aa5.9□□□□□ -1.46
VPS39-204ENST00000561818 SAPCD1Q5SSQ6 148 aa5.9□□□□□ -1.46
VPS39-204ENST00000561818 ASPHD1Q5U4P2 390 aa5.9□□□□□ -1.46
VPS39-204ENST00000561818 SPATA31B1PQ5VZV4 182 aa5.9□□□□□ -1.46
VPS39-204ENST00000561818 PATE2Q6UY27 113 aa5.9□□□□□ -1.46
VPS39-204ENST00000561818 ATP5L2Q7Z4Y8 100 aa5.9□□□□□ -1.46
VPS39-204ENST00000561818 ZNF329Q86UD4 541 aa5.9□□□□□ -1.46
VPS39-204ENST00000561818 BAGE2Q86Y30 109 aa5.9□□□□□ -1.46
VPS39-204ENST00000561818 DYNAPQ8N1N2 210 aa5.9□□□□□ -1.46
VPS39-204ENST00000561818 DAZAP1Q96EP5 407 aaKnown RBP5.9□□□□□ -1.46
VPS39-204ENST00000561818 YPEL4Q96NS1 127 aa5.9□□□□□ -1.46
VPS39-204ENST00000561818 NDFIP1Q9BT67 221 aa5.9□□□□□ -1.46
VPS39-204ENST00000561818 PRSS22Q9GZN4 317 aa5.9□□□□□ -1.46
VPS39-204ENST00000561818 GFRA4Q9GZZ7 299 aa5.9□□□□□ -1.46
VPS39-204ENST00000561818 PRDM13Q9H4Q3 707 aa5.9□□□□□ -1.46
VPS39-204ENST00000561818 IL36BQ9NZH7 164 aa5.9□□□□□ -1.46
VPS39-204ENST00000561818 VPREB3Q9UKI3 123 aa5.9□□□□□ -1.46
VPS39-204ENST00000561818 LRRK2Q5S007 2527 aa5.9□□□□□ -1.47
VPS39-204ENST00000561818 EPG5Q9HCE0 2579 aa5.9□□□□□ -1.47
VPS39-204ENST00000561818 NAV3Q8IVL0 2385 aa5.89□□□□□ -1.47
VPS39-204ENST00000561818 WNK2Q9Y3S1 2297 aa5.89□□□□□ -1.47
VPS39-204ENST00000561818 A0A1B0GW15 77 aa5.89□□□□□ -1.47
VPS39-204ENST00000561818 RBAKDNA6NC62 111 aa5.89□□□□□ -1.47
VPS39-204ENST00000561818 PGPA6NDG6 321 aa5.89□□□□□ -1.47
VPS39-204ENST00000561818 FSHBP01225 129 aa5.89□□□□□ -1.47
VPS39-204ENST00000561818 PFN1P07737 140 aaKnown RBP5.89□□□□□ -1.47
VPS39-204ENST00000561818 CT45A10P0DMU9 189 aa5.89□□□□□ -1.47
VPS39-204ENST00000561818 IGLC2P0DOY2 106 aa5.89□□□□□ -1.47
VPS39-204ENST00000561818 EGR2P11161 476 aaPredicted RBP5.89□□□□□ -1.47
VPS39-204ENST00000561818 PLA2G2AP14555 144 aa5.89□□□□□ -1.47
VPS39-204ENST00000561818 NPPCP23582 126 aa5.89□□□□□ -1.47
VPS39-204ENST00000561818 C19orf54Q5BKX5 351 aa5.89□□□□□ -1.47
VPS39-204ENST00000561818 IBA57Q5T440 356 aaKnown RBP5.89□□□□□ -1.47
VPS39-204ENST00000561818 FAM162BQ5T6X4 162 aa5.89□□□□□ -1.47
VPS39-204ENST00000561818 OR8I2Q8N0Y5 310 aa5.89□□□□□ -1.47
VPS39-204ENST00000561818 WFDC12Q8WWY7 111 aa5.89□□□□□ -1.47
VPS39-204ENST00000561818 ZNF503Q96F45 646 aa5.89□□□□□ -1.47
VPS39-204ENST00000561818 FOXC2Q99958 501 aa5.89□□□□□ -1.47
VPS39-204ENST00000561818 FAM103A1Q9BTL3 118 aaKnown RBP5.89□□□□□ -1.47
VPS39-204ENST00000561818 Q9H3A6 140 aa5.89□□□□□ -1.47
VPS39-204ENST00000561818 ZNF492Q9P255 531 aa5.89□□□□□ -1.47
VPS39-204ENST00000561818 DMRT1Q9Y5R6 373 aa5.89□□□□□ -1.47
VPS39-204ENST00000561818 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP5.89□□□□□ -1.473e-8■■■■□ 24.8
VPS39-204ENST00000561818 HRNRQ86YZ3 2850 aaPredicted RBP5.89□□□□□ -1.47
VPS39-204ENST00000561818 LOC105371267A0A1B0GV96 52 aa5.88□□□□□ -1.47
VPS39-204ENST00000561818 A1L4Q6 167 aa5.88□□□□□ -1.47
VPS39-204ENST00000561818 A8MWL6 223 aa5.88□□□□□ -1.47
VPS39-204ENST00000561818 TRGV3P03979 118 aa5.88□□□□□ -1.47
VPS39-204ENST00000561818 TCRAP04437 139 aa5.88□□□□□ -1.47
VPS39-204ENST00000561818 ELANEP08246 267 aa5.88□□□□□ -1.47
VPS39-204ENST00000561818 CTSGP08311 255 aa5.88□□□□□ -1.47
VPS39-204ENST00000561818 RNF224P0DH78 156 aa5.88□□□□□ -1.47
VPS39-204ENST00000561818 APELAP0DMC3 54 aa5.88□□□□□ -1.47
VPS39-204ENST00000561818 IGHV4-31P0DP07 118 aa5.88□□□□□ -1.47
VPS39-204ENST00000561818 IGHV4-38-2P0DP08 117 aa5.88□□□□□ -1.47
VPS39-204ENST00000561818 CD24P25063 80 aa5.88□□□□□ -1.47
VPS39-204ENST00000561818 RANP62826 216 aaKnown RBP5.88□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms