RNA–Protein interactions for RNA: ENST00000560514.1

TSPAN3-208, Transcript of tetraspanin 3, humanhuman

TSL 2

Gene TSPAN3, Length 638 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-208ENST00000560514 IGLC1P0CG04 106 aa12.54□□□□□ -0.4
TSPAN3-208ENST00000560514 INAFM2P0DMQ5 153 aa12.54□□□□□ -0.4
TSPAN3-208ENST00000560514 RND2P52198 227 aa12.54□□□□□ -0.4
TSPAN3-208ENST00000560514 ATP5IP56385 69 aaPredicted RBP12.54□□□□□ -0.4
TSPAN3-208ENST00000560514 PSG9Q00887 426 aa12.54□□□□□ -0.4
TSPAN3-208ENST00000560514 NMSQ5H8A3 153 aa12.54□□□□□ -0.4
TSPAN3-208ENST00000560514 CLVS1Q8IUQ0 354 aaPredicted RBP12.54□□□□□ -0.4
TSPAN3-208ENST00000560514 OR51S1Q8NGJ8 323 aa12.54□□□□□ -0.4
TSPAN3-208ENST00000560514 OR4C16Q8NGL9 310 aa12.54□□□□□ -0.4
TSPAN3-208ENST00000560514 LHFPL5Q8TAF8 219 aa12.54□□□□□ -0.4
TSPAN3-208ENST00000560514 PFDN2Q9UHV9 154 aa12.54□□□□□ -0.4
TSPAN3-208ENST00000560514 BUB3O43684 328 aa12.53□□□□□ -0.4
TSPAN3-208ENST00000560514 NUP62P37198 522 aaPredicted RBP12.53□□□□□ -0.4
TSPAN3-208ENST00000560514 DEFB1P60022 68 aa12.53□□□□□ -0.4
TSPAN3-208ENST00000560514 USF2Q15853 346 aaPredicted RBP12.53□□□□□ -0.4
TSPAN3-208ENST00000560514 TMEM268Q5VZI3 342 aa12.53□□□□□ -0.4
TSPAN3-208ENST00000560514 SPATA31B1PQ5VZV4 182 aa12.53□□□□□ -0.4
TSPAN3-208ENST00000560514 FAAP20Q6NZ36 180 aa12.53□□□□□ -0.4
TSPAN3-208ENST00000560514 EBLN2Q6P2I7 272 aa12.53□□□□□ -0.4
TSPAN3-208ENST00000560514 PRSS54Q6PEW0 395 aa12.53□□□□□ -0.4
TSPAN3-208ENST00000560514 ZNF709Q8N972 641 aa12.53□□□□□ -0.4
TSPAN3-208ENST00000560514 CLUHP3Q96NS8 147 aa12.53□□□□□ -0.4
TSPAN3-208ENST00000560514 SLC35B3Q9H1N7 401 aa12.53□□□□□ -0.4
TSPAN3-208ENST00000560514 CACNG5Q9UF02 275 aa12.53□□□□□ -0.4
TSPAN3-208ENST00000560514 U3KQ87 197 aa12.53□□□□□ -0.4
TSPAN3-208ENST00000560514 CEBPZOSA8MTT3 80 aa12.52□□□□□ -0.41
TSPAN3-208ENST00000560514 F5H768 121 aa12.52□□□□□ -0.41
TSPAN3-208ENST00000560514 SULT1A3P0DMM9 295 aa12.52□□□□□ -0.41
TSPAN3-208ENST00000560514 SULT1A4P0DMN0 295 aa12.52□□□□□ -0.41
TSPAN3-208ENST00000560514 CLINT1Q14677 625 aa12.52□□□□□ -0.41
TSPAN3-208ENST00000560514 C1orf158Q8N1D5 194 aa12.52□□□□□ -0.41
TSPAN3-208ENST00000560514 SLC24A4Q8NFF2 622 aa12.52□□□□□ -0.41
TSPAN3-208ENST00000560514 A0A0B4J2A0 478 aa12.51□□□□□ -0.41
TSPAN3-208ENST00000560514 RD3LP0DJH9 198 aa12.51□□□□□ -0.41
TSPAN3-208ENST00000560514 CCR6P51684 374 aa12.51□□□□□ -0.41
TSPAN3-208ENST00000560514 TTC32Q5I0X7 151 aa12.51□□□□□ -0.41
TSPAN3-208ENST00000560514 SHPKQ9UHJ6 478 aa12.51□□□□□ -0.41
TSPAN3-208ENST00000560514 FABP12A6NFH5 140 aa12.5□□□□□ -0.41
TSPAN3-208ENST00000560514 LYRM9A8MSI8 78 aa12.5□□□□□ -0.41
TSPAN3-208ENST00000560514 DEFB130BP0DP73 79 aa12.5□□□□□ -0.41
TSPAN3-208ENST00000560514 DEFB130AP0DP74 79 aa12.5□□□□□ -0.41
TSPAN3-208ENST00000560514 TNFSF8P32971 234 aa12.5□□□□□ -0.41
TSPAN3-208ENST00000560514 PSMB3P49720 205 aa12.5□□□□□ -0.41
TSPAN3-208ENST00000560514 SRPXP78539 464 aa12.5□□□□□ -0.41
TSPAN3-208ENST00000560514 SLIRPQ9GZT3 109 aaKnown RBP12.5□□□□□ -0.41
TSPAN3-208ENST00000560514 LINC00588Q9Y4M8 146 aa12.5□□□□□ -0.41
TSPAN3-208ENST00000560514 TOMM40O96008 361 aa12.49□□□□□ -0.41
TSPAN3-208ENST00000560514 ANXA3P12429 323 aa12.49□□□□□ -0.41
TSPAN3-208ENST00000560514 KRTAP10-2P60368 255 aa12.49□□□□□ -0.41
TSPAN3-208ENST00000560514 FAM78BQ5VT40 261 aa12.49□□□□□ -0.41
TSPAN3-208ENST00000560514 WDR12Q9GZL7 423 aaKnown RBP12.49□□□□□ -0.41
TSPAN3-208ENST00000560514 Q9H8V8 135 aa12.49□□□□□ -0.41
TSPAN3-208ENST00000560514 PTTG2Q9NZH5 202 aa12.49□□□□□ -0.41
TSPAN3-208ENST00000560514 HSPB7Q9UBY9 170 aa12.49□□□□□ -0.41
TSPAN3-208ENST00000560514 NOL3O60936 208 aaKnown RBP12.48□□□□□ -0.41
TSPAN3-208ENST00000560514 GPX4P36969 197 aaPredicted RBP12.48□□□□□ -0.41
TSPAN3-208ENST00000560514 SMCO1Q147U7 214 aa12.48□□□□□ -0.41
TSPAN3-208ENST00000560514 ZNF79Q15937 498 aa12.48□□□□□ -0.41
TSPAN3-208ENST00000560514 SSX7Q7RTT5 188 aa12.48□□□□□ -0.41
TSPAN3-208ENST00000560514 LGI3Q8N145 548 aa12.48□□□□□ -0.41
TSPAN3-208ENST00000560514 OR51G1Q8NGK1 321 aa12.48□□□□□ -0.41
TSPAN3-208ENST00000560514 TMEM170AQ8WVE7 144 aa12.48□□□□□ -0.41
TSPAN3-208ENST00000560514 DEDD2Q8WXF8 326 aa12.48□□□□□ -0.41
TSPAN3-208ENST00000560514 NPIPB3Q92617 1050 aa12.48□□□□□ -0.41
TSPAN3-208ENST00000560514 ACY3Q96HD9 319 aa12.48□□□□□ -0.41
TSPAN3-208ENST00000560514 PBDC1Q9BVG4 233 aa12.48□□□□□ -0.41
TSPAN3-208ENST00000560514 ATP5G1P05496 136 aa12.47□□□□□ -0.41
TSPAN3-208ENST00000560514 FAUP35544 74 aaKnown RBP12.47□□□□□ -0.41
TSPAN3-208ENST00000560514 ATP5G3P48201 142 aa12.47□□□□□ -0.41
TSPAN3-208ENST00000560514 DUXBA0A1W2PPF3 345 aa12.46□□□□□ -0.41
TSPAN3-208ENST00000560514 F6UB75 175 aa12.46□□□□□ -0.41
TSPAN3-208ENST00000560514 H3BMQ9 156 aa12.46□□□□□ -0.41
TSPAN3-208ENST00000560514 PSG1P11464 419 aa12.46□□□□□ -0.41
TSPAN3-208ENST00000560514 AKR1C4P17516 323 aa12.46□□□□□ -0.41
TSPAN3-208ENST00000560514 BTF3P20290 206 aaKnown RBP12.46□□□□□ -0.41
TSPAN3-208ENST00000560514 PAX9P55771 341 aa12.46□□□□□ -0.41
TSPAN3-208ENST00000560514 AP3S2P59780 193 aa12.46□□□□□ -0.41
TSPAN3-208ENST00000560514 SUPT4H1P63272 117 aaKnown RBP12.46□□□□□ -0.41
TSPAN3-208ENST00000560514 KLF9Q13886 244 aaPredicted RBP12.46□□□□□ -0.41
TSPAN3-208ENST00000560514 LYZL2Q7Z4W2 148 aa12.46□□□□□ -0.41
TSPAN3-208ENST00000560514 DTD1Q8TEA8 209 aa12.46□□□□□ -0.41
TSPAN3-208ENST00000560514 RNF125Q96EQ8 232 aa12.46□□□□□ -0.41
TSPAN3-208ENST00000560514 IGF2BP2-AS1Q96M15 143 aa12.46□□□□□ -0.41
TSPAN3-208ENST00000560514 RPRMQ9NS64 109 aa12.46□□□□□ -0.41
TSPAN3-208ENST00000560514 MCUBQ9NWR8 336 aa12.46□□□□□ -0.41
TSPAN3-208ENST00000560514 ZNF705GA8MUZ8 300 aaPredicted RBP12.45□□□□□ -0.42
TSPAN3-208ENST00000560514 SLC25A6P12236 298 aa12.45□□□□□ -0.42
TSPAN3-208ENST00000560514 DLK1P80370 383 aa12.45□□□□□ -0.42
TSPAN3-208ENST00000560514 TMEM128Q5BJH2 165 aa12.45□□□□□ -0.42
TSPAN3-208ENST00000560514 SAMD13Q5VXD3 122 aa12.45□□□□□ -0.42
TSPAN3-208ENST00000560514 OR8G2PQ6IF36 304 aa12.45□□□□□ -0.42
TSPAN3-208ENST00000560514 MCFD2Q8NI22 146 aa12.45□□□□□ -0.42
TSPAN3-208ENST00000560514 FRZBQ92765 325 aa12.45□□□□□ -0.42
TSPAN3-208ENST00000560514 PPP1R14BQ96C90 147 aa12.45□□□□□ -0.42
TSPAN3-208ENST00000560514 A0A0J9YX75 114 aa12.44□□□□□ -0.42
TSPAN3-208ENST00000560514 ISLRO14498 428 aa12.44□□□□□ -0.42
TSPAN3-208ENST00000560514 NXPH3O95157 252 aa12.44□□□□□ -0.42
TSPAN3-208ENST00000560514 B2MP61769 119 aa12.44□□□□□ -0.42
TSPAN3-208ENST00000560514 LRTM2Q8N967 370 aa12.44□□□□□ -0.42
TSPAN3-208ENST00000560514 RNF141Q8WVD5 230 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms