RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 GGTLC3B5MD39 225 aa14□□□□□ -0.17
SNX1-208ENST00000559844 HLA-DRB1P01911 266 aa14□□□□□ -0.17
SNX1-208ENST00000559844 CRYBB3P26998 211 aa14□□□□□ -0.17
SNX1-208ENST00000559844 RPL35P42766 123 aaKnown RBP14□□□□□ -0.17
SNX1-208ENST00000559844 SFRP2Q96HF1 295 aa14□□□□□ -0.17
SNX1-208ENST00000559844 IMMP2LQ96T52 175 aa14□□□□□ -0.17
SNX1-208ENST00000559844 HIGD1AQ9Y241 93 aa14□□□□□ -0.17
SNX1-208ENST00000559844 MXRA5Q9NR99 2828 aa13.99□□□□□ -0.17
SNX1-208ENST00000559844 IGLV11-55A0A075B6I3 123 aa13.99□□□□□ -0.17
SNX1-208ENST00000559844 HELTA6NFD8 242 aa13.99□□□□□ -0.17
SNX1-208ENST00000559844 PYYP10082 97 aa13.99□□□□□ -0.17
SNX1-208ENST00000559844 ASPHD1Q5U4P2 390 aa13.99□□□□□ -0.17
SNX1-208ENST00000559844 NECAP1Q8NC96 275 aa13.99□□□□□ -0.17
SNX1-208ENST00000559844 OCC1Q8TAD7 63 aa13.99□□□□□ -0.17
SNX1-208ENST00000559844 FXYD5Q96DB9 178 aa13.99□□□□□ -0.17
SNX1-208ENST00000559844 BTF3L4Q96K17 158 aa13.99□□□□□ -0.17
SNX1-208ENST00000559844 THYN1Q9P016 225 aa13.99□□□□□ -0.17
SNX1-208ENST00000559844 CDC42EP3Q9UKI2 254 aa13.99□□□□□ -0.17
SNX1-208ENST00000559844 SOX21Q9Y651 276 aaPredicted RBP13.99□□□□□ -0.17
SNX1-208ENST00000559844 C5orf52A6NGY3 159 aa13.98□□□□□ -0.17
SNX1-208ENST00000559844 PSG1P11464 419 aa13.98□□□□□ -0.17
SNX1-208ENST00000559844 TIGITQ495A1 244 aa13.98□□□□□ -0.17
SNX1-208ENST00000559844 ZNF48Q96MX3 618 aaPredicted RBP13.98□□□□□ -0.17
SNX1-208ENST00000559844 FN1P02751 2386 aaKnown RBP13.98□□□□□ -0.17
SNX1-208ENST00000559844 A0A0U1RQK1 487 aa13.98□□□□□ -0.17
SNX1-208ENST00000559844 RD3LP0DJH9 198 aa13.98□□□□□ -0.17
SNX1-208ENST00000559844 SNRPEP62304 92 aaKnown RBP13.98□□□□□ -0.17
SNX1-208ENST00000559844 NDPQ00604 133 aa13.98□□□□□ -0.17
SNX1-208ENST00000559844 BCL6BQ8N143 479 aaPredicted RBP13.98□□□□□ -0.17
SNX1-208ENST00000559844 IGHV7-81A0A0B4J1V7 117 aa13.97□□□□□ -0.17
SNX1-208ENST00000559844 PGPEP1LA6NFU8 196 aa13.97□□□□□ -0.17
SNX1-208ENST00000559844 GNG4P50150 75 aa13.97□□□□□ -0.17
SNX1-208ENST00000559844 LYZP61626 148 aa13.97□□□□□ -0.17
SNX1-208ENST00000559844 SRD5A3Q9H8P0 318 aa13.97□□□□□ -0.17
SNX1-208ENST00000559844 GGCTO75223 188 aaKnown RBP13.96□□□□□ -0.17
SNX1-208ENST00000559844 TOMM40O96008 361 aa13.96□□□□□ -0.17
SNX1-208ENST00000559844 IGKV1-17P01599 117 aa13.96□□□□□ -0.17
SNX1-208ENST00000559844 MFAP4P55083 255 aa13.96□□□□□ -0.17
SNX1-208ENST00000559844 OR10G8Q8NGN5 311 aa13.96□□□□□ -0.17
SNX1-208ENST00000559844 FANCD2OSQ96PS1 177 aa13.96□□□□□ -0.17
SNX1-208ENST00000559844 ELOVL1Q9BW60 279 aa13.96□□□□□ -0.17
SNX1-208ENST00000559844 AURKAIP1Q9NWT8 199 aaPredicted RBP13.96□□□□□ -0.17
SNX1-208ENST00000559844 ANK3Q12955 4377 aaKnown RBP13.96□□□□□ -0.18
SNX1-208ENST00000559844 AP4M1O00189 453 aa13.96□□□□□ -0.18
SNX1-208ENST00000559844 UBE2CO00762 179 aa13.96□□□□□ -0.18
SNX1-208ENST00000559844 SCGB2A1O75556 95 aa13.96□□□□□ -0.18
SNX1-208ENST00000559844 SRD5A1P18405 259 aa13.96□□□□□ -0.18
SNX1-208ENST00000559844 TEX38Q6PEX7 206 aa13.96□□□□□ -0.18
SNX1-208ENST00000559844 C9orf139Q6ZV77 190 aa13.96□□□□□ -0.18
SNX1-208ENST00000559844 PLXNB1O43157 2135 aa13.96□□□□□ -0.18
SNX1-208ENST00000559844 PPP5D1E7EU14 171 aa13.95□□□□□ -0.18
SNX1-208ENST00000559844 TRGC2P03986 189 aa13.95□□□□□ -0.18
SNX1-208ENST00000559844 HIST1H1BP16401 226 aaKnown RBP13.95□□□□□ -0.18
SNX1-208ENST00000559844 TAS2R60P59551 318 aa13.95□□□□□ -0.18
SNX1-208ENST00000559844 YPEL3P61236 119 aaPredicted RBP13.95□□□□□ -0.18
SNX1-208ENST00000559844 CENPWQ5EE01 88 aa13.95□□□□□ -0.18
SNX1-208ENST00000559844 S100A7AQ86SG5 101 aa13.95□□□□□ -0.18
SNX1-208ENST00000559844 ZNF329Q86UD4 541 aa13.95□□□□□ -0.18
SNX1-208ENST00000559844 MRPL27Q9P0M9 148 aaKnown RBP13.95□□□□□ -0.18
SNX1-208ENST00000559844 GNG7O60262 68 aa13.94□□□□□ -0.18
SNX1-208ENST00000559844 EGR2P11161 476 aaPredicted RBP13.94□□□□□ -0.18
SNX1-208ENST00000559844 FOXL1Q12952 345 aa13.94□□□□□ -0.18
SNX1-208ENST00000559844 TMEM14CQ9P0S9 112 aa13.94□□□□□ -0.18
SNX1-208ENST00000559844 A0A1W2PPQ1 181 aa13.94□□□□□ -0.18
SNX1-208ENST00000559844 GP9P14770 177 aa13.94□□□□□ -0.18
SNX1-208ENST00000559844 AKR1D1P51857 326 aa13.94□□□□□ -0.18
SNX1-208ENST00000559844 CNN1P51911 297 aaKnown RBP13.94□□□□□ -0.18
SNX1-208ENST00000559844 DEFB112Q30KQ8 113 aa13.94□□□□□ -0.18
SNX1-208ENST00000559844 SGMS2Q8NHU3 365 aa13.94□□□□□ -0.18
SNX1-208ENST00000559844 TMEM68Q96MH6 324 aa13.94□□□□□ -0.18
SNX1-208ENST00000559844 SLC25A39Q9BZJ4 359 aaPredicted RBP13.94□□□□□ -0.18
SNX1-208ENST00000559844 K7EN84 100 aa13.93□□□□□ -0.18
SNX1-208ENST00000559844 TYMSP04818 313 aa13.93□□□□□ -0.18
SNX1-208ENST00000559844 NBEAP1P0C6P0 100 aa13.93□□□□□ -0.18
SNX1-208ENST00000559844 MYCNOSP40205 109 aa13.93□□□□□ -0.18
SNX1-208ENST00000559844 FAM110DQ8TAY7 271 aaPredicted RBP13.93□□□□□ -0.18
SNX1-208ENST00000559844 TMEM190Q8WZ59 177 aa13.93□□□□□ -0.18
SNX1-208ENST00000559844 C21orf62Q9NYP8 219 aa13.93□□□□□ -0.18
SNX1-208ENST00000559844 ZFHX3Q15911 3703 aa13.93□□□□□ -0.18
SNX1-208ENST00000559844 PEX7O00628 323 aa13.92□□□□□ -0.18
SNX1-208ENST00000559844 FAM3BP58499 235 aaPredicted RBP13.92□□□□□ -0.18
SNX1-208ENST00000559844 TXN2Q99757 166 aa13.92□□□□□ -0.18
SNX1-208ENST00000559844 FABP9Q0Z7S8 132 aa13.92□□□□□ -0.18
SNX1-208ENST00000559844 SCGB2A2Q13296 93 aa13.92□□□□□ -0.18
SNX1-208ENST00000559844 Q56UQ5 140 aa13.92□□□□□ -0.18
SNX1-208ENST00000559844 RNF125Q96EQ8 232 aa13.92□□□□□ -0.18
SNX1-208ENST00000559844 IGF2BP2-AS1Q96M15 143 aa13.92□□□□□ -0.18
SNX1-208ENST00000559844 HSPB9Q9BQS6 159 aa13.92□□□□□ -0.18
SNX1-208ENST00000559844 RNF24Q9Y225 148 aa13.92□□□□□ -0.18
SNX1-208ENST00000559844 TRAV9-1A0A075B6T8 112 aa13.91□□□□□ -0.18
SNX1-208ENST00000559844 WI2-2373I1.2A0A1W2PRP0 233 aa13.91□□□□□ -0.18
SNX1-208ENST00000559844 CRLF1O75462 422 aa13.91□□□□□ -0.18
SNX1-208ENST00000559844 GCGP01275 180 aa13.91□□□□□ -0.18
SNX1-208ENST00000559844 RANP62826 216 aaKnown RBP13.91□□□□□ -0.18
SNX1-208ENST00000559844 KLK9Q2XQG4 91 aa13.91□□□□□ -0.18
SNX1-208ENST00000559844 UNQ5815/PRO19632Q6UWF5 114 aa13.91□□□□□ -0.18
SNX1-208ENST00000559844 ZNF491Q8N8L2 437 aa13.91□□□□□ -0.18
SNX1-208ENST00000559844 VN1R17PQ8TDU5 208 aa13.91□□□□□ -0.18
SNX1-208ENST00000559844 BLNKQ8WV28 456 aa13.91□□□□□ -0.18
SNX1-208ENST00000559844 SHANK2-AS3Q9BTD1 123 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms