RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 HOXB4P17483 251 aaPredicted RBP8.4□□□□□ -1.06
CUX1-217ENST00000558836 CX3CL1P78423 397 aa8.4□□□□□ -1.06
CUX1-217ENST00000558836 TMEM256Q8N2U0 113 aa8.4□□□□□ -1.06
CUX1-217ENST00000558836 PERPQ96FX8 193 aa8.4□□□□□ -1.06
CUX1-217ENST00000558836 RASL11BQ9BPW5 248 aa8.4□□□□□ -1.06
CUX1-217ENST00000558836 IGHV3OR16-8A0A075B7F1 116 aa8.4□□□□□ -1.06
CUX1-217ENST00000558836 ELOA3CA0A087WX78 387 aaPredicted RBP8.4□□□□□ -1.06
CUX1-217ENST00000558836 IGHV3-35A0A0C4DH35 117 aa8.4□□□□□ -1.06
CUX1-217ENST00000558836 IGKV1-17P01599 117 aa8.4□□□□□ -1.06
CUX1-217ENST00000558836 TYMSP04818 313 aa8.4□□□□□ -1.06
CUX1-217ENST00000558836 SLC25A5P05141 298 aaKnown RBP8.4□□□□□ -1.06
CUX1-217ENST00000558836 ADMP35318 185 aa8.4□□□□□ -1.06
CUX1-217ENST00000558836 C5orf64Q2M2E5 130 aa8.4□□□□□ -1.06
CUX1-217ENST00000558836 IBA57Q5T440 356 aaKnown RBP8.4□□□□□ -1.06
CUX1-217ENST00000558836 PVRIGQ6DKI7 326 aa8.4□□□□□ -1.06
CUX1-217ENST00000558836 TMEM183AQ8IXX5 376 aa8.4□□□□□ -1.06
CUX1-217ENST00000558836 IGF2BP2-AS1Q96M15 143 aa8.4□□□□□ -1.06
CUX1-217ENST00000558836 PEX7O00628 323 aa8.4□□□□□ -1.07
CUX1-217ENST00000558836 NUPR1O60356 82 aa8.4□□□□□ -1.07
CUX1-217ENST00000558836 AMBPP02760 352 aa8.4□□□□□ -1.07
CUX1-217ENST00000558836 EFNA4P52798 201 aa8.4□□□□□ -1.07
CUX1-217ENST00000558836 Q71RC1 249 aaPredicted RBP8.4□□□□□ -1.07
CUX1-217ENST00000558836 RNF2Q99496 336 aa8.4□□□□□ -1.07
CUX1-217ENST00000558836 ABCA12Q86UK0 2595 aa8.39□□□□□ -1.07
CUX1-217ENST00000558836 A6NNC1 897 aa8.39□□□□□ -1.07
CUX1-217ENST00000558836 GOSR1O95249 250 aa8.39□□□□□ -1.07
CUX1-217ENST00000558836 CNN1P51911 297 aaKnown RBP8.39□□□□□ -1.07
CUX1-217ENST00000558836 ODF1Q14990 250 aa8.39□□□□□ -1.07
CUX1-217ENST00000558836 RPEL1Q2QD12 228 aa8.39□□□□□ -1.07
CUX1-217ENST00000558836 MRPL54Q6P161 138 aaKnown RBP8.39□□□□□ -1.07
CUX1-217ENST00000558836 BAGE2Q86Y30 109 aa8.39□□□□□ -1.07
CUX1-217ENST00000558836 EXOC3-AS1Q8N2X6 119 aa8.39□□□□□ -1.07
CUX1-217ENST00000558836 C17orf77Q96MU5 243 aa8.39□□□□□ -1.07
CUX1-217ENST00000558836 TRAV8-1A0A0A6YYK1 113 aa8.39□□□□□ -1.07
CUX1-217ENST00000558836 ZNF705GA8MUZ8 300 aaPredicted RBP8.39□□□□□ -1.07
CUX1-217ENST00000558836 CORTO00230 105 aa8.39□□□□□ -1.07
CUX1-217ENST00000558836 KIAA1644Q3SXP7 199 aa8.39□□□□□ -1.07
CUX1-217ENST00000558836 OR1L6Q8NGR2 347 aa8.39□□□□□ -1.07
CUX1-217ENST00000558836 CIDEAO60543 219 aa8.38□□□□□ -1.07
CUX1-217ENST00000558836 GCGP01275 180 aa8.38□□□□□ -1.07
CUX1-217ENST00000558836 HIST1H1BP16401 226 aaKnown RBP8.38□□□□□ -1.07
CUX1-217ENST00000558836 RAB4BP61018 213 aa8.38□□□□□ -1.07
CUX1-217ENST00000558836 RNF5Q99942 180 aa8.38□□□□□ -1.07
CUX1-217ENST00000558836 SLC25A39Q9BZJ4 359 aaPredicted RBP8.38□□□□□ -1.07
CUX1-217ENST00000558836 HIGD1AQ9Y241 93 aa8.38□□□□□ -1.07
CUX1-217ENST00000558836 ARL2-SNX15V9GYD0 113 aa8.38□□□□□ -1.07
CUX1-217ENST00000558836 SNURFLB1AK76 121 aa8.38□□□□□ -1.07
CUX1-217ENST00000558836 GP9P14770 177 aa8.38□□□□□ -1.07
CUX1-217ENST00000558836 CD33P20138 364 aa8.38□□□□□ -1.07
CUX1-217ENST00000558836 WDR73Q6P4I2 378 aa8.38□□□□□ -1.07
CUX1-217ENST00000558836 NPBQ8NG41 125 aa8.38□□□□□ -1.07
CUX1-217ENST00000558836 SIRPDQ9H106 197 aa8.38□□□□□ -1.07
CUX1-217ENST00000558836 PTPN13Q12923 2485 aa8.38□□□□□ -1.07
CUX1-217ENST00000558836 F2Z2F3 143 aa8.37□□□□□ -1.07
CUX1-217ENST00000558836 NDUFA3O95167 84 aa8.37□□□□□ -1.07
CUX1-217ENST00000558836 IL4P05112 153 aa8.37□□□□□ -1.07
CUX1-217ENST00000558836 LMO4P61968 165 aa8.37□□□□□ -1.07
CUX1-217ENST00000558836 ARPC1AQ92747 370 aa8.37□□□□□ -1.07
CUX1-217ENST00000558836 FANCD2OSQ96PS1 177 aa8.37□□□□□ -1.07
CUX1-217ENST00000558836 TBX15Q96SF7 602 aa8.37□□□□□ -1.07
CUX1-217ENST00000558836 MRPL18Q9H0U6 180 aaKnown RBP8.37□□□□□ -1.07
CUX1-217ENST00000558836 ZNF586Q9NXT0 402 aa8.37□□□□□ -1.07
CUX1-217ENST00000558836 CDC42EP3Q9UKI2 254 aa8.37□□□□□ -1.07
CUX1-217ENST00000558836 EPDR1Q9UM22 224 aa8.37□□□□□ -1.07
CUX1-217ENST00000558836 OR2J3O76001 311 aa8.37□□□□□ -1.07
CUX1-217ENST00000558836 IGHV4-39P01824 125 aa8.37□□□□□ -1.07
CUX1-217ENST00000558836 SAA4P35542 130 aa8.37□□□□□ -1.07
CUX1-217ENST00000558836 PAX2Q02962 417 aa8.37□□□□□ -1.07
CUX1-217ENST00000558836 BTF3L4Q96K17 158 aa8.37□□□□□ -1.07
CUX1-217ENST00000558836 Q9H3A6 140 aa8.37□□□□□ -1.07
CUX1-217ENST00000558836 LY96Q9Y6Y9 160 aa8.37□□□□□ -1.07
CUX1-217ENST00000558836 LINC01548A6NM66 108 aa8.37□□□□□ -1.07
CUX1-217ENST00000558836 FCGR2BP31994 310 aaPredicted RBP8.37□□□□□ -1.07
CUX1-217ENST00000558836 MYCNOSP40205 109 aa8.37□□□□□ -1.07
CUX1-217ENST00000558836 UBE2G1P62253 170 aa8.37□□□□□ -1.07
CUX1-217ENST00000558836 PIP4P2Q8N4L2 257 aa8.37□□□□□ -1.07
CUX1-217ENST00000558836 HSPB9Q9BQS6 159 aa8.37□□□□□ -1.07
CUX1-217ENST00000558836 FBN2P35556 2912 aa8.36□□□□□ -1.07
CUX1-217ENST00000558836 IGHV2-70DA0A0C4DH43 119 aa8.36□□□□□ -1.07
CUX1-217ENST00000558836 GNG7O60262 68 aa8.36□□□□□ -1.07
CUX1-217ENST00000558836 ZNF562Q6V9R5 426 aa8.36□□□□□ -1.07
CUX1-217ENST00000558836 LINC00322Q6ZN03 302 aaPredicted RBP8.36□□□□□ -1.07
CUX1-217ENST00000558836 NRGNQ92686 78 aa8.36□□□□□ -1.07
CUX1-217ENST00000558836 OR2T8A6NH00 312 aa8.36□□□□□ -1.07
CUX1-217ENST00000558836 NDUFB8O95169 186 aa8.36□□□□□ -1.07
CUX1-217ENST00000558836 PRB1P04280 392 aa8.36□□□□□ -1.07
CUX1-217ENST00000558836 Q56UQ5 140 aa8.36□□□□□ -1.07
CUX1-217ENST00000558836 SAPCD1Q5SSQ6 148 aa8.36□□□□□ -1.07
CUX1-217ENST00000558836 NUDT10Q8NFP7 164 aa8.36□□□□□ -1.07
CUX1-217ENST00000558836 NUDT11Q96G61 164 aa8.36□□□□□ -1.07
CUX1-217ENST00000558836 TMUB1Q9BVT8 246 aa8.36□□□□□ -1.07
CUX1-217ENST00000558836 NAT8BQ9UHF3 227 aa8.36□□□□□ -1.07
CUX1-217ENST00000558836 ANKRD17O75179 2603 aaKnown RBP8.35□□□□□ -1.07
CUX1-217ENST00000558836 USF2Q15853 346 aaPredicted RBP8.35□□□□□ -1.07
CUX1-217ENST00000558836 ECSCRQ19T08 205 aa8.35□□□□□ -1.07
CUX1-217ENST00000558836 CCDC144NLQ6NUI1 221 aa8.35□□□□□ -1.07
CUX1-217ENST00000558836 ZNF491Q8N8L2 437 aa8.35□□□□□ -1.07
CUX1-217ENST00000558836 STXBP6Q8NFX7 210 aa8.35□□□□□ -1.07
CUX1-217ENST00000558836 AJUBAQ96IF1 538 aa8.35□□□□□ -1.07
CUX1-217ENST00000558836 PRO1933Q9H354 126 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms