RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 OTORQ9NRC9 128 aa5.79□□□□□ -1.48
VPS13C-206ENST00000558338 ZNF492Q9P255 531 aa5.79□□□□□ -1.48
VPS13C-206ENST00000558338 NAGKQ9UJ70 344 aa5.79□□□□□ -1.48
VPS13C-206ENST00000558338 SOX21Q9Y651 276 aaPredicted RBP5.79□□□□□ -1.48
VPS13C-206ENST00000558338 TRBV6-1A0A0K0K1D8 114 aa5.78□□□□□ -1.48
VPS13C-206ENST00000558338 GRIFINA4D1Z8 144 aa5.78□□□□□ -1.48
VPS13C-206ENST00000558338 PGPA6NDG6 321 aa5.78□□□□□ -1.48
VPS13C-206ENST00000558338 ODF3BA8MYP8 253 aa5.78□□□□□ -1.48
VPS13C-206ENST00000558338 I3L2K1 104 aa5.78□□□□□ -1.48
VPS13C-206ENST00000558338 SERF1AO75920 110 aa5.78□□□□□ -1.48
VPS13C-206ENST00000558338 TOMM40O96008 361 aa5.78□□□□□ -1.48
VPS13C-206ENST00000558338 IGHV3-48P01763 117 aa5.78□□□□□ -1.48
VPS13C-206ENST00000558338 PRTN3P24158 256 aa5.78□□□□□ -1.48
VPS13C-206ENST00000558338 LYZP61626 148 aa5.78□□□□□ -1.48
VPS13C-206ENST00000558338 MINOS1Q5TGZ0 78 aa5.78□□□□□ -1.48
VPS13C-206ENST00000558338 DTX2Q86UW9 622 aa5.78□□□□□ -1.48
VPS13C-206ENST00000558338 Q8N1Y9 231 aa5.78□□□□□ -1.48
VPS13C-206ENST00000558338 TSKUQ8WUA8 353 aa5.78□□□□□ -1.48
VPS13C-206ENST00000558338 BLNKQ8WV28 456 aa5.78□□□□□ -1.48
VPS13C-206ENST00000558338 MBD6Q96DN6 1003 aa5.78□□□□□ -1.48
VPS13C-206ENST00000558338 SAMD10Q9BYL1 202 aa5.78□□□□□ -1.48
VPS13C-206ENST00000558338 BEX4Q9NWD9 120 aaPredicted RBP5.78□□□□□ -1.48
VPS13C-206ENST00000558338 PPP1R14DQ9NXH3 145 aa5.78□□□□□ -1.48
VPS13C-206ENST00000558338 RAXQ9Y2V3 346 aa5.78□□□□□ -1.48
VPS13C-206ENST00000558338 MINOS1-NBL1R4GNA1 71 aa5.78□□□□□ -1.48
VPS13C-206ENST00000558338 DSPP15924 2871 aaKnown RBP5.77□□□□□ -1.48
VPS13C-206ENST00000558338 BSNQ9UPA5 3926 aa5.77□□□□□ -1.49
VPS13C-206ENST00000558338 APCSP02743 223 aa5.77□□□□□ -1.49
VPS13C-206ENST00000558338 PSG1P11464 419 aa5.77□□□□□ -1.49
VPS13C-206ENST00000558338 S100A7P31151 101 aa5.77□□□□□ -1.49
VPS13C-206ENST00000558338 FAM162BQ5T6X4 162 aa5.77□□□□□ -1.49
VPS13C-206ENST00000558338 LYPD1Q8N2G4 141 aa5.77□□□□□ -1.49
VPS13C-206ENST00000558338 SIGLECL1Q8N7X8 197 aa5.77□□□□□ -1.49
VPS13C-206ENST00000558338 NUDT10Q8NFP7 164 aa5.77□□□□□ -1.49
VPS13C-206ENST00000558338 NUDT11Q96G61 164 aa5.77□□□□□ -1.49
VPS13C-206ENST00000558338 KCNS1Q96KK3 526 aa5.77□□□□□ -1.49
VPS13C-206ENST00000558338 ZNF48Q96MX3 618 aaPredicted RBP5.77□□□□□ -1.49
VPS13C-206ENST00000558338 SLC25A39Q9BZJ4 359 aaPredicted RBP5.77□□□□□ -1.49
VPS13C-206ENST00000558338 PRO1933Q9H354 126 aa5.77□□□□□ -1.49
VPS13C-206ENST00000558338 Q9H3A6 140 aa5.77□□□□□ -1.49
VPS13C-206ENST00000558338 ZNF586Q9NXT0 402 aa5.77□□□□□ -1.49
VPS13C-206ENST00000558338 MRPL27Q9P0M9 148 aaKnown RBP5.77□□□□□ -1.49
VPS13C-206ENST00000558338 ACACAQ13085 2346 aa5.77□□□□□ -1.49
VPS13C-206ENST00000558338 A0A087WWL8 130 aa5.77□□□□□ -1.49
VPS13C-206ENST00000558338 FAM231BA6NCW3 169 aa5.77□□□□□ -1.49
VPS13C-206ENST00000558338 NPIPB5A8MRT5 1133 aa5.77□□□□□ -1.49
VPS13C-206ENST00000558338 A8MWL6 223 aa5.77□□□□□ -1.49
VPS13C-206ENST00000558338 A8MWP6 167 aa5.77□□□□□ -1.49
VPS13C-206ENST00000558338 K7EQM0 130 aa5.77□□□□□ -1.49
VPS13C-206ENST00000558338 LTAP01374 205 aa5.77□□□□□ -1.49
VPS13C-206ENST00000558338 TCRAP04437 139 aa5.77□□□□□ -1.49
VPS13C-206ENST00000558338 TCL1AP56279 114 aa5.77□□□□□ -1.49
VPS13C-206ENST00000558338 MRPL54Q6P161 138 aaKnown RBP5.77□□□□□ -1.49
VPS13C-206ENST00000558338 ZNF600Q6ZNG1 722 aa5.77□□□□□ -1.49
VPS13C-206ENST00000558338 BPIFA4PQ86YQ2 179 aa5.77□□□□□ -1.49
VPS13C-206ENST00000558338 ZNF664Q8N3J9 261 aa5.77□□□□□ -1.49
VPS13C-206ENST00000558338 NHLRC2Q8NBF2 726 aa5.77□□□□□ -1.49
VPS13C-206ENST00000558338 OR4F17Q8NGA8 305 aa5.77□□□□□ -1.49
VPS13C-206ENST00000558338 OR4B1Q8NGF8 309 aa5.77□□□□□ -1.49
VPS13C-206ENST00000558338 C14orf144Q96I85 54 aa5.77□□□□□ -1.49
VPS13C-206ENST00000558338 NDUFAF3Q9BU61 184 aa5.77□□□□□ -1.49
VPS13C-206ENST00000558338 GFRA4Q9GZZ7 299 aa5.77□□□□□ -1.49
VPS13C-206ENST00000558338 RPP21Q9H633 154 aaKnown RBP5.77□□□□□ -1.49
VPS13C-206ENST00000558338 C7orf69Q9H7B7 122 aa5.77□□□□□ -1.49
VPS13C-206ENST00000558338 TP53TG3Q9ULZ0 132 aa5.77□□□□□ -1.49
VPS13C-206ENST00000558338 CFAP47Q6ZTR5 3102 aa5.77□□□□□ -1.49
VPS13C-206ENST00000558338 GVINP1Q7Z2Y8 2422 aa5.76□□□□□ -1.49
VPS13C-206ENST00000558338 CEP250Q9BV73 2442 aa5.76□□□□□ -1.49
VPS13C-206ENST00000558338 KIR2DL5BA0A0G2JN68 375 aa5.76□□□□□ -1.49
VPS13C-206ENST00000558338 KIR2DL5BA0A0G2JPC4 375 aa5.76□□□□□ -1.49
VPS13C-206ENST00000558338 ZNF705FA8MVS1 300 aaPredicted RBP5.76□□□□□ -1.49
VPS13C-206ENST00000558338 H3BRN7 92 aa5.76□□□□□ -1.49
VPS13C-206ENST00000558338 TGFAP01135 160 aa5.76□□□□□ -1.49
VPS13C-206ENST00000558338 P01737 135 aa5.76□□□□□ -1.49
VPS13C-206ENST00000558338 ZNF705DP0CH99 300 aaPredicted RBP5.76□□□□□ -1.49
VPS13C-206ENST00000558338 ZNF705BP0CI00 300 aaPredicted RBP5.76□□□□□ -1.49
VPS13C-206ENST00000558338 APELAP0DMC3 54 aa5.76□□□□□ -1.49
VPS13C-206ENST00000558338 ARF6P62330 175 aa5.76□□□□□ -1.49
VPS13C-206ENST00000558338 GNG5P63218 68 aa5.76□□□□□ -1.49
VPS13C-206ENST00000558338 C5orf64Q2M2E5 130 aa5.76□□□□□ -1.49
VPS13C-206ENST00000558338 C1orf194Q5T5A4 169 aa5.76□□□□□ -1.49
VPS13C-206ENST00000558338 PRR27Q6MZM9 219 aa5.76□□□□□ -1.49
VPS13C-206ENST00000558338 MRPL52Q86TS9 123 aaKnown RBP5.76□□□□□ -1.49
VPS13C-206ENST00000558338 KIR2DL5AQ8N109 375 aa5.76□□□□□ -1.49
VPS13C-206ENST00000558338 NUP35Q8NFH5 326 aa5.76□□□□□ -1.49
VPS13C-206ENST00000558338 IGFBPL1Q8WX77 278 aa5.76□□□□□ -1.49
VPS13C-206ENST00000558338 DAZAP1Q96EP5 407 aaKnown RBP5.76□□□□□ -1.49
VPS13C-206ENST00000558338 LINC00479Q96M42 142 aa5.76□□□□□ -1.49
VPS13C-206ENST00000558338 PIMREGQ9BSJ6 248 aa5.76□□□□□ -1.49
VPS13C-206ENST00000558338 SHANK2-AS3Q9BTD1 123 aa5.76□□□□□ -1.49
VPS13C-206ENST00000558338 MLST8Q9BVC4 326 aa5.76□□□□□ -1.49
VPS13C-206ENST00000558338 GNB4Q9HAV0 340 aa5.76□□□□□ -1.49
VPS13C-206ENST00000558338 THYN1Q9P016 225 aa5.76□□□□□ -1.49
VPS13C-206ENST00000558338 APC2O95996 2303 aa5.76□□□□□ -1.49
VPS13C-206ENST00000558338 AKAP13Q12802 2813 aa5.76□□□□□ -1.49
VPS13C-206ENST00000558338 MUC6Q6W4X9 2439 aa5.76□□□□□ -1.49
VPS13C-206ENST00000558338 RIF1Q5UIP0 2472 aaKnown RBP5.76□□□□□ -1.49
VPS13C-206ENST00000558338 ANKRD11Q6UB99 2663 aaPredicted RBP5.75□□□□□ -1.49
VPS13C-206ENST00000558338 IGHV3-21A0A0B4J1V1 117 aa5.75□□□□□ -1.49
VPS13C-206ENST00000558338 A0A1B0GUS0 222 aa5.75□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms