RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 IGKV1-5P01602 117 aa5.98□□□□□ -1.45
CCDC88C-214ENST00000557507 IFNA4P05014 189 aa5.98□□□□□ -1.45
CCDC88C-214ENST00000557507 CLEC3BP05452 202 aa5.98□□□□□ -1.45
CCDC88C-214ENST00000557507 NMBP08949 121 aa5.98□□□□□ -1.45
CCDC88C-214ENST00000557507 FGF2P09038 288 aa5.98□□□□□ -1.45
CCDC88C-214ENST00000557507 G6PCP35575 357 aa5.98□□□□□ -1.45
CCDC88C-214ENST00000557507 ELLP55199 621 aaPredicted RBP5.98□□□□□ -1.45
CCDC88C-214ENST00000557507 RAB11AP62491 216 aa5.98□□□□□ -1.45
CCDC88C-214ENST00000557507 HSD17B13Q7Z5P4 300 aaPredicted RBP5.98□□□□□ -1.45
CCDC88C-214ENST00000557507 PUSL1Q8N0Z8 303 aaKnown RBP5.98□□□□□ -1.45
CCDC88C-214ENST00000557507 OR10P1Q8NGE3 313 aa5.98□□□□□ -1.45
CCDC88C-214ENST00000557507 TMEM167AQ8TBQ9 72 aa5.98□□□□□ -1.45
CCDC88C-214ENST00000557507 ZNF502Q8TBZ5 544 aa5.98□□□□□ -1.45
CCDC88C-214ENST00000557507 DTD1Q8TEA8 209 aa5.98□□□□□ -1.45
CCDC88C-214ENST00000557507 ATP5SQ99766 215 aa5.98□□□□□ -1.45
CCDC88C-214ENST00000557507 RARRES2Q99969 163 aa5.98□□□□□ -1.45
CCDC88C-214ENST00000557507 GINS3Q9BRX5 216 aa5.98□□□□□ -1.45
CCDC88C-214ENST00000557507 MAGT1Q9H0U3 335 aa5.98□□□□□ -1.45
CCDC88C-214ENST00000557507 CYTL1Q9NRR1 136 aa5.98□□□□□ -1.45
CCDC88C-214ENST00000557507 KCNIP2Q9NS61 270 aa5.98□□□□□ -1.45
CCDC88C-214ENST00000557507 UFC1Q9Y3C8 167 aa5.98□□□□□ -1.45
CCDC88C-214ENST00000557507 IGHV3OR16-8A0A075B7F1 116 aa5.97□□□□□ -1.45
CCDC88C-214ENST00000557507 TRBV7-1A0A0A6YYK4 115 aa5.97□□□□□ -1.45
CCDC88C-214ENST00000557507 RPS10-NUDT3A0A1W2PQS6 291 aa5.97□□□□□ -1.45
CCDC88C-214ENST00000557507 FAM24AA6NFZ4 105 aa5.97□□□□□ -1.45
CCDC88C-214ENST00000557507 OR4C46A6NHA9 309 aa5.97□□□□□ -1.45
CCDC88C-214ENST00000557507 IGLL5B9A064 214 aa5.97□□□□□ -1.45
CCDC88C-214ENST00000557507 C17orf112F2Z3M2 114 aa5.97□□□□□ -1.45
CCDC88C-214ENST00000557507 RTL8CO15255 209 aa5.97□□□□□ -1.45
CCDC88C-214ENST00000557507 IGKV1-39P01597 117 aa5.97□□□□□ -1.45
CCDC88C-214ENST00000557507 MBP02144 154 aa5.97□□□□□ -1.45
CCDC88C-214ENST00000557507 IGKV1D-39P04432 117 aa5.97□□□□□ -1.45
CCDC88C-214ENST00000557507 HIST1H1BP16401 226 aaKnown RBP5.97□□□□□ -1.45
CCDC88C-214ENST00000557507 SULT1A2P50226 295 aa5.97□□□□□ -1.45
CCDC88C-214ENST00000557507 MFAP2P55001 183 aa5.97□□□□□ -1.45
CCDC88C-214ENST00000557507 TCTAP57738 103 aa5.97□□□□□ -1.45
CCDC88C-214ENST00000557507 BRWD1-AS2P59051 145 aa5.97□□□□□ -1.45
CCDC88C-214ENST00000557507 POU2AF1Q16633 256 aa5.97□□□□□ -1.45
CCDC88C-214ENST00000557507 SPANXN5Q5MJ07 72 aa5.97□□□□□ -1.45
CCDC88C-214ENST00000557507 RPL7L1Q6DKI1 246 aaKnown RBP5.97□□□□□ -1.45
CCDC88C-214ENST00000557507 EIF4E3Q8N5X7 224 aaKnown RBP5.97□□□□□ -1.45
CCDC88C-214ENST00000557507 ZNF709Q8N972 641 aa5.97□□□□□ -1.45
CCDC88C-214ENST00000557507 OR5C1Q8NGR4 320 aa5.97□□□□□ -1.45
CCDC88C-214ENST00000557507 OR11H2Q8NH07 326 aa5.97□□□□□ -1.45
CCDC88C-214ENST00000557507 TMED6Q8WW62 240 aa5.97□□□□□ -1.45
CCDC88C-214ENST00000557507 CXorf58Q96LI9 332 aa5.97□□□□□ -1.45
CCDC88C-214ENST00000557507 GPHA2Q96T91 129 aa5.97□□□□□ -1.45
CCDC88C-214ENST00000557507 PBDC1Q9BVG4 233 aa5.97□□□□□ -1.45
CCDC88C-214ENST00000557507 GGACTQ9BVM4 153 aa5.97□□□□□ -1.45
CCDC88C-214ENST00000557507 PARD6GQ9BYG4 376 aaPredicted RBP5.97□□□□□ -1.45
CCDC88C-214ENST00000557507 SMIM3Q9BZL3 60 aa5.97□□□□□ -1.45
CCDC88C-214ENST00000557507 DAZ1Q9NQZ3 744 aaKnown RBP5.97□□□□□ -1.45
CCDC88C-214ENST00000557507 IGLC7A0M8Q6 106 aa5.96□□□□□ -1.46
CCDC88C-214ENST00000557507 PRSS29PA6NIE9 313 aa5.96□□□□□ -1.46
CCDC88C-214ENST00000557507 TGOLN2O43493 480 aa5.96□□□□□ -1.46
CCDC88C-214ENST00000557507 ZNF207O43670 478 aaKnown RBP5.96□□□□□ -1.46
CCDC88C-214ENST00000557507 HBE1P02100 147 aa5.96□□□□□ -1.46
CCDC88C-214ENST00000557507 P0C879 139 aa5.96□□□□□ -1.46
CCDC88C-214ENST00000557507 SPP1P10451 314 aa5.96□□□□□ -1.46
CCDC88C-214ENST00000557507 MAS1LP35410 378 aa5.96□□□□□ -1.46
CCDC88C-214ENST00000557507 CAMLGP49069 296 aa5.96□□□□□ -1.46
CCDC88C-214ENST00000557507 HOXA1P49639 335 aaPredicted RBP5.96□□□□□ -1.46
CCDC88C-214ENST00000557507 SUB1P53999 127 aaKnown RBP eCLIP5.96□□□□□ -1.46
CCDC88C-214ENST00000557507 SERF2P84101 59 aa5.96□□□□□ -1.46
CCDC88C-214ENST00000557507 RAB31Q13636 194 aa5.96□□□□□ -1.46
CCDC88C-214ENST00000557507 AARDQ4LEZ3 155 aa5.96□□□□□ -1.46
CCDC88C-214ENST00000557507 AKR1C8PQ5T2L2 129 aa5.96□□□□□ -1.46
CCDC88C-214ENST00000557507 SSX9Q7RTT3 188 aa5.96□□□□□ -1.46
CCDC88C-214ENST00000557507 OR2G3Q8NGZ4 309 aa5.96□□□□□ -1.46
CCDC88C-214ENST00000557507 ZNF414Q96IQ9 312 aa5.96□□□□□ -1.46
CCDC88C-214ENST00000557507 CSTL1Q9H114 145 aa5.96□□□□□ -1.46
CCDC88C-214ENST00000557507 ARV1Q9H2C2 271 aa5.96□□□□□ -1.46
CCDC88C-214ENST00000557507 RBKSQ9H477 322 aa5.96□□□□□ -1.46
CCDC88C-214ENST00000557507 HEYLQ9NQ87 328 aaPredicted RBP5.96□□□□□ -1.46
CCDC88C-214ENST00000557507 TMEM140Q9NV12 185 aa5.96□□□□□ -1.46
CCDC88C-214ENST00000557507 IGSF23A1L1A6 192 aa5.95□□□□□ -1.46
CCDC88C-214ENST00000557507 OR2T8A6NH00 312 aa5.95□□□□□ -1.46
CCDC88C-214ENST00000557507 MPDU1O75352 247 aa5.95□□□□□ -1.46
CCDC88C-214ENST00000557507 CST7O76096 145 aa5.95□□□□□ -1.46
CCDC88C-214ENST00000557507 IFNA10P01566 189 aa5.95□□□□□ -1.46
CCDC88C-214ENST00000557507 IAPPP10997 89 aa5.95□□□□□ -1.46
CCDC88C-214ENST00000557507 DEFA4P12838 97 aa5.95□□□□□ -1.46
CCDC88C-214ENST00000557507 OR2B8PP59922 312 aa5.95□□□□□ -1.46
CCDC88C-214ENST00000557507 HSPE1P61604 102 aaKnown RBP5.95□□□□□ -1.46
CCDC88C-214ENST00000557507 RPL8P62917 257 aaKnown RBP5.95□□□□□ -1.46
CCDC88C-214ENST00000557507 ERHP84090 104 aaKnown RBP5.95□□□□□ -1.46
CCDC88C-214ENST00000557507 NHLH2Q02577 135 aa5.95□□□□□ -1.46
CCDC88C-214ENST00000557507 SLC38A11Q08AI6 406 aa5.95□□□□□ -1.46
CCDC88C-214ENST00000557507 CLINT1Q14677 625 aa5.95□□□□□ -1.46
CCDC88C-214ENST00000557507 PXDC1Q5TGL8 231 aa5.95□□□□□ -1.46
CCDC88C-214ENST00000557507 ZNF575Q86XF7 245 aa5.95□□□□□ -1.46
CCDC88C-214ENST00000557507 Q8NAQ8 132 aa5.95□□□□□ -1.46
CCDC88C-214ENST00000557507 PSMG3Q9BT73 122 aaPredicted RBP5.95□□□□□ -1.46
CCDC88C-214ENST00000557507 TMEM147Q9BVK8 224 aa5.95□□□□□ -1.46
CCDC88C-214ENST00000557507 COMMD5Q9GZQ3 224 aa5.95□□□□□ -1.46
CCDC88C-214ENST00000557507 SMDT1Q9H4I9 107 aa5.95□□□□□ -1.46
CCDC88C-214ENST00000557507 C11orf1Q9H5F2 150 aa5.95□□□□□ -1.46
CCDC88C-214ENST00000557507 UQCC1Q9NVA1 299 aa5.95□□□□□ -1.46
CCDC88C-214ENST00000557507 BET1LQ9NYM9 111 aa5.95□□□□□ -1.46
CCDC88C-214ENST00000557507 TIMM9Q9Y5J7 89 aa5.95□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms