RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 KNCNA6PVL3 124 aa11.69□□□□□ -0.54
CCDC88C-209ENST00000554872 HLA-DRB4P13762 266 aa11.69□□□□□ -0.54
CCDC88C-209ENST00000554872 C4BPBP20851 252 aa11.69□□□□□ -0.54
CCDC88C-209ENST00000554872 MEOX2P50222 304 aa11.69□□□□□ -0.54
CCDC88C-209ENST00000554872 PLP1P60201 277 aa11.69□□□□□ -0.54
CCDC88C-209ENST00000554872 AKR1C1Q04828 323 aa11.69□□□□□ -0.54
CCDC88C-209ENST00000554872 CSNK1G2-AS1Q8NCQ2 148 aa11.69□□□□□ -0.54
CCDC88C-209ENST00000554872 ZNF431Q8TF32 576 aaPredicted RBP11.69□□□□□ -0.54
CCDC88C-209ENST00000554872 GPR82Q96P67 336 aa11.69□□□□□ -0.54
CCDC88C-209ENST00000554872 GGACTQ9BVM4 153 aa11.69□□□□□ -0.54
CCDC88C-209ENST00000554872 NUDT15Q9NV35 164 aa11.69□□□□□ -0.54
CCDC88C-209ENST00000554872 HLA-DRB4X5D2U9 266 aa11.69□□□□□ -0.54
CCDC88C-209ENST00000554872 H3BMM0 161 aa11.68□□□□□ -0.54
CCDC88C-209ENST00000554872 ISLRO14498 428 aa11.68□□□□□ -0.54
CCDC88C-209ENST00000554872 ID1P41134 155 aa11.68□□□□□ -0.54
CCDC88C-209ENST00000554872 NUTF2P61970 127 aaKnown RBP11.68□□□□□ -0.54
CCDC88C-209ENST00000554872 SELENOTP62341 195 aa11.68□□□□□ -0.54
CCDC88C-209ENST00000554872 ASAH1Q13510 395 aa11.68□□□□□ -0.54
CCDC88C-209ENST00000554872 OR2F1Q13607 317 aa11.68□□□□□ -0.54
CCDC88C-209ENST00000554872 SPATA31B1PQ5VZV4 182 aa11.68□□□□□ -0.54
CCDC88C-209ENST00000554872 CEMP1Q6PRD7 247 aaPredicted RBP11.68□□□□□ -0.54
CCDC88C-209ENST00000554872 Q8NAQ8 132 aa11.68□□□□□ -0.54
CCDC88C-209ENST00000554872 C1QTNF4Q9BXJ3 329 aa11.68□□□□□ -0.54
CCDC88C-209ENST00000554872 MFFQ9GZY8 342 aa11.68□□□□□ -0.54
CCDC88C-209ENST00000554872 DNAH1Q9P2D7 4330 aa11.68□□□□□ -0.54
CCDC88C-209ENST00000554872 CXorf65A6NEN9 183 aa11.67□□□□□ -0.54
CCDC88C-209ENST00000554872 MBPP02686 304 aaPredicted RBP11.67□□□□□ -0.54
CCDC88C-209ENST00000554872 MIFP14174 115 aa11.67□□□□□ -0.54
CCDC88C-209ENST00000554872 CYP2G1PQ6ZSU1 146 aa11.67□□□□□ -0.54
CCDC88C-209ENST00000554872 OR8I2Q8N0Y5 310 aa11.67□□□□□ -0.54
CCDC88C-209ENST00000554872 OR10P1Q8NGE3 313 aa11.67□□□□□ -0.54
CCDC88C-209ENST00000554872 WDR12Q9GZL7 423 aaKnown RBP11.67□□□□□ -0.54
CCDC88C-209ENST00000554872 HRH4Q9H3N8 390 aa11.67□□□□□ -0.54
CCDC88C-209ENST00000554872 TBC1D24Q9ULP9 559 aa11.67□□□□□ -0.54
CCDC88C-209ENST00000554872 AGRNO00468 2067 aa11.67□□□□□ -0.54
CCDC88C-209ENST00000554872 C7orf66A4D0T2 115 aa11.66□□□□□ -0.54
CCDC88C-209ENST00000554872 ZNF98A6NK75 572 aa11.66□□□□□ -0.54
CCDC88C-209ENST00000554872 GALR1P47211 349 aa11.66□□□□□ -0.54
CCDC88C-209ENST00000554872 MZT2BQ6NZ67 158 aa11.66□□□□□ -0.54
CCDC88C-209ENST00000554872 TMEM182Q6ZP80 229 aaPredicted RBP11.66□□□□□ -0.54
CCDC88C-209ENST00000554872 FOXI2Q6ZQN5 318 aa11.66□□□□□ -0.54
CCDC88C-209ENST00000554872 OR1B1Q8NGR6 318 aa11.66□□□□□ -0.54
CCDC88C-209ENST00000554872 PPP1R14BQ96C90 147 aa11.66□□□□□ -0.54
CCDC88C-209ENST00000554872 TMEM147Q9BVK8 224 aa11.66□□□□□ -0.54
CCDC88C-209ENST00000554872 SAV1Q9H4B6 383 aaPredicted RBP11.66□□□□□ -0.54
CCDC88C-209ENST00000554872 NPVFQ9HCQ7 196 aa11.66□□□□□ -0.54
CCDC88C-209ENST00000554872 PTTG2Q9NZH5 202 aa11.66□□□□□ -0.54
CCDC88C-209ENST00000554872 KLK5Q9Y337 293 aaPredicted RBP11.66□□□□□ -0.54
CCDC88C-209ENST00000554872 TRAV6A0A075B6T7 132 aa11.65□□□□□ -0.54
CCDC88C-209ENST00000554872 FAM240BA0A1B0GVZ2 78 aa11.65□□□□□ -0.54
CCDC88C-209ENST00000554872 H2AFB2P0C5Z0 115 aa11.65□□□□□ -0.54
CCDC88C-209ENST00000554872 METTL15P1P0C7V9 234 aa11.65□□□□□ -0.54
CCDC88C-209ENST00000554872 ZNF846Q147U1 533 aa11.65□□□□□ -0.54
CCDC88C-209ENST00000554872 PXDC1Q5TGL8 231 aa11.65□□□□□ -0.54
CCDC88C-209ENST00000554872 S100A7AQ86SG5 101 aa11.65□□□□□ -0.54
CCDC88C-209ENST00000554872 C12orf45Q8N5I9 185 aaPredicted RBP11.65□□□□□ -0.54
CCDC88C-209ENST00000554872 SLC25A32Q9H2D1 315 aa11.65□□□□□ -0.54
CCDC88C-209ENST00000554872 C11orf1Q9H5F2 150 aa11.65□□□□□ -0.54
CCDC88C-209ENST00000554872 GSKIPQ9P0R6 139 aa11.65□□□□□ -0.54
CCDC88C-209ENST00000554872 RNF24Q9Y225 148 aa11.65□□□□□ -0.54
CCDC88C-209ENST00000554872 X6R8D5 127 aa11.65□□□□□ -0.54
CCDC88C-209ENST00000554872 A8MTW9 85 aa11.64□□□□□ -0.55
CCDC88C-209ENST00000554872 H3BRN7 92 aa11.64□□□□□ -0.55
CCDC88C-209ENST00000554872 DEDDO75618 318 aa11.64□□□□□ -0.55
CCDC88C-209ENST00000554872 CCNKO75909 580 aa11.64□□□□□ -0.55
CCDC88C-209ENST00000554872 SCGB1D2O95969 90 aa11.64□□□□□ -0.55
CCDC88C-209ENST00000554872 IL5P05113 134 aa11.64□□□□□ -0.55
CCDC88C-209ENST00000554872 ORM2P19652 201 aa11.64□□□□□ -0.55
CCDC88C-209ENST00000554872 GATA2P23769 480 aaPredicted RBP11.64□□□□□ -0.55
CCDC88C-209ENST00000554872 PMS2P11Q13670 270 aa11.64□□□□□ -0.55
CCDC88C-209ENST00000554872 TEPPQ6URK8 271 aa11.64□□□□□ -0.55
CCDC88C-209ENST00000554872 C11orf45Q8TAV5 145 aa11.64□□□□□ -0.55
CCDC88C-209ENST00000554872 C2orf50Q96LR7 162 aa11.64□□□□□ -0.55
CCDC88C-209ENST00000554872 C17orf77Q96MU5 243 aa11.64□□□□□ -0.55
CCDC88C-209ENST00000554872 SEC22CQ9BRL7 303 aa11.64□□□□□ -0.55
CCDC88C-209ENST00000554872 SHANK2-AS3Q9BTD1 123 aa11.64□□□□□ -0.55
CCDC88C-209ENST00000554872 MGAT4CQ9UBM8 478 aa11.64□□□□□ -0.55
CCDC88C-209ENST00000554872 PLECQ15149 4684 aaKnown RBP11.63□□□□□ -0.55
CCDC88C-209ENST00000554872 SMCO3A2RU48 225 aa11.63□□□□□ -0.55
CCDC88C-209ENST00000554872 UPK1BO75841 260 aa11.63□□□□□ -0.55
CCDC88C-209ENST00000554872 IL15RAQ13261 267 aa11.63□□□□□ -0.55
CCDC88C-209ENST00000554872 ZNF546Q86UE3 836 aa11.63□□□□□ -0.55
CCDC88C-209ENST00000554872 PHLDA1Q8WV24 401 aaPredicted RBP11.63□□□□□ -0.55
CCDC88C-209ENST00000554872 LINC00476Q8WZB0 136 aa11.63□□□□□ -0.55
CCDC88C-209ENST00000554872 SLC25A39Q9BZJ4 359 aaPredicted RBP11.63□□□□□ -0.55
CCDC88C-209ENST00000554872 ALMS1Q8TCU4 4167 aa11.63□□□□□ -0.55
CCDC88C-209ENST00000554872 IGHV4-28A0A0C4DH34 117 aa11.62□□□□□ -0.55
CCDC88C-209ENST00000554872 CCSO14618 274 aa11.62□□□□□ -0.55
CCDC88C-209ENST00000554872 HYPMO75409 117 aa11.62□□□□□ -0.55
CCDC88C-209ENST00000554872 LINC00869P0C866 280 aa11.62□□□□□ -0.55
CCDC88C-209ENST00000554872 RAP2BP61225 183 aa11.62□□□□□ -0.55
CCDC88C-209ENST00000554872 ARL16Q0P5N6 197 aa11.62□□□□□ -0.55
CCDC88C-209ENST00000554872 NEU1Q99519 415 aa11.62□□□□□ -0.55
CCDC88C-209ENST00000554872 HIGD1AQ9Y241 93 aa11.62□□□□□ -0.55
CCDC88C-209ENST00000554872 A0A087X0K7 114 aa11.61□□□□□ -0.55
CCDC88C-209ENST00000554872 RBMY1A1P0DJD3 496 aaKnown RBP11.61□□□□□ -0.55
CCDC88C-209ENST00000554872 RBMY1CP0DJD4 496 aa11.61□□□□□ -0.55
CCDC88C-209ENST00000554872 RPL7P18124 248 aaKnown RBP11.61□□□□□ -0.55
CCDC88C-209ENST00000554872 TCTAP57738 103 aa11.61□□□□□ -0.55
CCDC88C-209ENST00000554872 RRAS2P62070 204 aaPredicted RBP11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms