RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 FBN1P35555 2871 aaKnown RBP6.18□□□□□ -1.42
LIMA1-216ENST00000552909 TRAV24A0A0B4J272 114 aa6.18□□□□□ -1.42
LIMA1-216ENST00000552909 hDV102S1A0JD36 115 aa6.18□□□□□ -1.42
LIMA1-216ENST00000552909 C15orf62A8K5M9 175 aa6.18□□□□□ -1.42
LIMA1-216ENST00000552909 ISLRO14498 428 aa6.18□□□□□ -1.42
LIMA1-216ENST00000552909 CRXO43186 299 aaPredicted RBP6.18□□□□□ -1.42
LIMA1-216ENST00000552909 GNG7O60262 68 aa6.18□□□□□ -1.42
LIMA1-216ENST00000552909 AREGP15514 252 aa6.18□□□□□ -1.42
LIMA1-216ENST00000552909 MZT1Q08AG7 82 aa6.18□□□□□ -1.42
LIMA1-216ENST00000552909 SPINK9Q5DT21 86 aa6.18□□□□□ -1.42
LIMA1-216ENST00000552909 IBA57Q5T440 356 aaKnown RBP6.18□□□□□ -1.42
LIMA1-216ENST00000552909 MIC13Q5XKP0 118 aa6.18□□□□□ -1.42
LIMA1-216ENST00000552909 MOB1BQ7L9L4 216 aa6.18□□□□□ -1.42
LIMA1-216ENST00000552909 S100A7AQ86SG5 101 aa6.18□□□□□ -1.42
LIMA1-216ENST00000552909 KIR3DL3Q8N743 410 aa6.18□□□□□ -1.42
LIMA1-216ENST00000552909 OR2T6Q8NHC8 308 aa6.18□□□□□ -1.42
LIMA1-216ENST00000552909 WIPF2Q8TF74 440 aaPredicted RBP6.18□□□□□ -1.42
LIMA1-216ENST00000552909 SCRT2Q9NQ03 307 aa6.18□□□□□ -1.42
LIMA1-216ENST00000552909 CLEC5AQ9NY25 188 aa6.18□□□□□ -1.42
LIMA1-216ENST00000552909 C1RLQ9NZP8 487 aa6.18□□□□□ -1.42
LIMA1-216ENST00000552909 POLDIP2Q9Y2S7 368 aa6.18□□□□□ -1.42
LIMA1-216ENST00000552909 A0A1B0GV72 72 aa6.18□□□□□ -1.42
LIMA1-216ENST00000552909 FAM231BA6NCW3 169 aa6.18□□□□□ -1.42
LIMA1-216ENST00000552909 SYS1-DBNDD2H3BUS1 97 aa6.18□□□□□ -1.42
LIMA1-216ENST00000552909 HAND1O96004 215 aa6.18□□□□□ -1.42
LIMA1-216ENST00000552909 GPR183P32249 361 aa6.18□□□□□ -1.42
LIMA1-216ENST00000552909 SEC11AP67812 179 aa6.18□□□□□ -1.42
LIMA1-216ENST00000552909 FAM162BQ5T6X4 162 aa6.18□□□□□ -1.42
LIMA1-216ENST00000552909 ZNF841Q6ZN19 808 aa6.18□□□□□ -1.42
LIMA1-216ENST00000552909 H2BFWTQ7Z2G1 175 aa6.18□□□□□ -1.42
LIMA1-216ENST00000552909 MGST2Q99735 147 aa6.18□□□□□ -1.42
LIMA1-216ENST00000552909 TMEM191AQ9H0A3 160 aa6.18□□□□□ -1.42
LIMA1-216ENST00000552909 GCM1Q9NP62 436 aa6.18□□□□□ -1.42
LIMA1-216ENST00000552909 A0A087X0K7 114 aa6.17□□□□□ -1.42
LIMA1-216ENST00000552909 HOXB4P17483 251 aaPredicted RBP6.17□□□□□ -1.42
LIMA1-216ENST00000552909 LMO4P61968 165 aa6.17□□□□□ -1.42
LIMA1-216ENST00000552909 CATR1Q13166 79 aa6.17□□□□□ -1.42
LIMA1-216ENST00000552909 FAM201AQ5SY85 155 aa6.17□□□□□ -1.42
LIMA1-216ENST00000552909 TREML4Q6UXN2 200 aa6.17□□□□□ -1.42
LIMA1-216ENST00000552909 NEGR1Q7Z3B1 354 aa6.17□□□□□ -1.42
LIMA1-216ENST00000552909 ZBTB34Q8NCN2 500 aa6.17□□□□□ -1.42
LIMA1-216ENST00000552909 ZC2HC1AQ96GY0 325 aa6.17□□□□□ -1.42
LIMA1-216ENST00000552909 GGTLC1Q9BX51 225 aa6.17□□□□□ -1.42
LIMA1-216ENST00000552909 FNDC4Q9H6D8 234 aaPredicted RBP6.17□□□□□ -1.42
LIMA1-216ENST00000552909 YAE1D1Q9NRH1 226 aa6.17□□□□□ -1.42
LIMA1-216ENST00000552909 SMPXQ9UHP9 88 aa6.17□□□□□ -1.42
LIMA1-216ENST00000552909 K7EP34 96 aa6.17□□□□□ -1.42
LIMA1-216ENST00000552909 TGFAP01135 160 aa6.17□□□□□ -1.42
LIMA1-216ENST00000552909 PPIAL4GP0DN37 164 aa6.17□□□□□ -1.42
LIMA1-216ENST00000552909 MGST1P10620 155 aaKnown RBP6.17□□□□□ -1.42
LIMA1-216ENST00000552909 HTR1DP28221 377 aa6.17□□□□□ -1.42
LIMA1-216ENST00000552909 ERVK11-1P61568 191 aa6.17□□□□□ -1.42
LIMA1-216ENST00000552909 RPL8P62917 257 aaKnown RBP6.17□□□□□ -1.42
LIMA1-216ENST00000552909 WDR82Q6UXN9 313 aa6.17□□□□□ -1.42
LIMA1-216ENST00000552909 MOGAT3Q86VF5 341 aa6.17□□□□□ -1.42
LIMA1-216ENST00000552909 Q8IYB0 196 aa6.17□□□□□ -1.42
LIMA1-216ENST00000552909 ZNF645Q8N7E2 425 aa6.17□□□□□ -1.42
LIMA1-216ENST00000552909 UBALD1Q8TB05 177 aa6.17□□□□□ -1.42
LIMA1-216ENST00000552909 MS4A6AQ9H2W1 248 aa6.17□□□□□ -1.42
LIMA1-216ENST00000552909 NPVFQ9HCQ7 196 aa6.17□□□□□ -1.42
LIMA1-216ENST00000552909 TRAPPC2LQ9UL33 140 aa6.17□□□□□ -1.42
LIMA1-216ENST00000552909 COL6A5A8TX70 2615 aa6.16□□□□□ -1.42
LIMA1-216ENST00000552909 C9orf118A6NHY6 69 aa6.16□□□□□ -1.42
LIMA1-216ENST00000552909 HBZP02008 142 aa6.16□□□□□ -1.42
LIMA1-216ENST00000552909 SMIM17P0DL12 118 aa6.16□□□□□ -1.42
LIMA1-216ENST00000552909 TNFRSF1AP19438 455 aa6.16□□□□□ -1.42
LIMA1-216ENST00000552909 MFAP2P55001 183 aa6.16□□□□□ -1.42
LIMA1-216ENST00000552909 RPL30P62888 115 aaKnown RBP6.16□□□□□ -1.42
LIMA1-216ENST00000552909 PSG3Q16557 428 aa6.16□□□□□ -1.42
LIMA1-216ENST00000552909 FAM120AOSQ5T036 256 aa6.16□□□□□ -1.42
LIMA1-216ENST00000552909 SPATA31B1PQ5VZV4 182 aa6.16□□□□□ -1.42
LIMA1-216ENST00000552909 LRRC29Q8WV35 223 aa6.16□□□□□ -1.42
LIMA1-216ENST00000552909 PMCHL2Q9BQD1 86 aa6.16□□□□□ -1.42
LIMA1-216ENST00000552909 PPIAL4DF5H284 164 aa6.16□□□□□ -1.42
LIMA1-216ENST00000552909 H3BRM9 83 aa6.16□□□□□ -1.42
LIMA1-216ENST00000552909 TMEM178BH3BS89 294 aa6.16□□□□□ -1.42
LIMA1-216ENST00000552909 FOXH1O75593 365 aa6.16□□□□□ -1.42
LIMA1-216ENST00000552909 OR2J3O76001 311 aa6.16□□□□□ -1.42
LIMA1-216ENST00000552909 LEPROTL1O95214 131 aa6.16□□□□□ -1.42
LIMA1-216ENST00000552909 APOA2P02652 100 aa6.16□□□□□ -1.42
LIMA1-216ENST00000552909 PLP1P60201 277 aa6.16□□□□□ -1.42
LIMA1-216ENST00000552909 BPIFA4PQ86YQ2 179 aa6.16□□□□□ -1.42
LIMA1-216ENST00000552909 SSMEM1Q8WWF3 244 aa6.16□□□□□ -1.42
LIMA1-216ENST00000552909 KCNIP1Q9NZI2 227 aa6.16□□□□□ -1.42
LIMA1-216ENST00000552909 A6NDN8 102 aa6.15□□□□□ -1.43
LIMA1-216ENST00000552909 C17orf98A8MV24 154 aa6.15□□□□□ -1.43
LIMA1-216ENST00000552909 OR2H2O95918 312 aa6.15□□□□□ -1.43
LIMA1-216ENST00000552909 CA1P00915 261 aaPredicted RBP6.15□□□□□ -1.43
LIMA1-216ENST00000552909 TFF1P04155 84 aa6.15□□□□□ -1.43
LIMA1-216ENST00000552909 HIST1H1EP10412 219 aaKnown RBP6.15□□□□□ -1.43
LIMA1-216ENST00000552909 AZU1P20160 251 aa6.15□□□□□ -1.43
LIMA1-216ENST00000552909 CEBPDP49716 269 aaPredicted RBP6.15□□□□□ -1.43
LIMA1-216ENST00000552909 SCGB2A2Q13296 93 aa6.15□□□□□ -1.43
LIMA1-216ENST00000552909 TMEM97Q5BJF2 176 aa6.15□□□□□ -1.43
LIMA1-216ENST00000552909 Q6P435 159 aa6.15□□□□□ -1.43
LIMA1-216ENST00000552909 ACP7Q6ZNF0 438 aa6.15□□□□□ -1.43
LIMA1-216ENST00000552909 IL17RELQ6ZVW7 336 aa6.15□□□□□ -1.43
LIMA1-216ENST00000552909 OR2K2Q8NGT1 345 aa6.15□□□□□ -1.43
LIMA1-216ENST00000552909 TIMD4Q96H15 378 aa6.15□□□□□ -1.43
LIMA1-216ENST00000552909 ATP6V0BQ99437 205 aa6.15□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 106.8 ms