RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 BIN3Q9NQY0 253 aa4.87□□□□□ -1.63
SYNE1-239ENST00000545694 ZNF355PQ9NSJ1 428 aa4.87□□□□□ -1.63
SYNE1-239ENST00000545694 HIF1ANQ9NWT6 349 aa4.87□□□□□ -1.63
SYNE1-239ENST00000545694 C21orf62Q9NYP8 219 aa4.87□□□□□ -1.63
SYNE1-239ENST00000545694 CR1P17927 2039 aa4.87□□□□□ -1.63
SYNE1-239ENST00000545694 TRBV24-1A0A075B6N3 115 aa4.86□□□□□ -1.63
SYNE1-239ENST00000545694 TRAV9-1A0A075B6T8 112 aa4.86□□□□□ -1.63
SYNE1-239ENST00000545694 A0A096LNT2 108 aa4.86□□□□□ -1.63
SYNE1-239ENST00000545694 TRBV7-1A0A0A6YYK4 115 aa4.86□□□□□ -1.63
SYNE1-239ENST00000545694 TRBV9A0A0B4J1U6 114 aa4.86□□□□□ -1.63
SYNE1-239ENST00000545694 TRAV40A0A0B4J280 105 aa4.86□□□□□ -1.63
SYNE1-239ENST00000545694 FAM223BA6NKX1 122 aa4.86□□□□□ -1.63
SYNE1-239ENST00000545694 IGKV1-17P01599 117 aa4.86□□□□□ -1.63
SYNE1-239ENST00000545694 IGF1P05019 195 aa4.86□□□□□ -1.63
SYNE1-239ENST00000545694 PSG1P11464 419 aa4.86□□□□□ -1.63
SYNE1-239ENST00000545694 S100PP25815 95 aa4.86□□□□□ -1.63
SYNE1-239ENST00000545694 SRP14P37108 136 aaKnown RBP4.86□□□□□ -1.63
SYNE1-239ENST00000545694 RAB5BP61020 215 aa4.86□□□□□ -1.63
SYNE1-239ENST00000545694 RPL23P62829 140 aaKnown RBP4.86□□□□□ -1.63
SYNE1-239ENST00000545694 ZNF90Q03938 601 aa4.86□□□□□ -1.63
SYNE1-239ENST00000545694 PRB3Q04118 309 aaPredicted RBP4.86□□□□□ -1.63
SYNE1-239ENST00000545694 PDE6HQ13956 83 aa4.86□□□□□ -1.63
SYNE1-239ENST00000545694 ASPHD1Q5U4P2 390 aa4.86□□□□□ -1.63
SYNE1-239ENST00000545694 SPATA31B1PQ5VZV4 182 aa4.86□□□□□ -1.63
SYNE1-239ENST00000545694 UNQ5815/PRO19632Q6UWF5 114 aa4.86□□□□□ -1.63
SYNE1-239ENST00000545694 PATE2Q6UY27 113 aa4.86□□□□□ -1.63
SYNE1-239ENST00000545694 BPIFA4PQ86YQ2 179 aa4.86□□□□□ -1.63
SYNE1-239ENST00000545694 CBLN2Q8IUK8 224 aa4.86□□□□□ -1.63
SYNE1-239ENST00000545694 FAM223AQ8IWN6 122 aa4.86□□□□□ -1.63
SYNE1-239ENST00000545694 OR1B1Q8NGR6 318 aa4.86□□□□□ -1.63
SYNE1-239ENST00000545694 C17orf50Q8WW18 174 aa4.86□□□□□ -1.63
SYNE1-239ENST00000545694 OR5B12Q96R08 314 aa4.86□□□□□ -1.63
SYNE1-239ENST00000545694 SLC25A2Q9BXI2 301 aa4.86□□□□□ -1.63
SYNE1-239ENST00000545694 MRPL27Q9P0M9 148 aaKnown RBP4.86□□□□□ -1.63
SYNE1-239ENST00000545694 TMA7Q9Y2S6 64 aaKnown RBP4.86□□□□□ -1.63
SYNE1-239ENST00000545694 DMRT1Q9Y5R6 373 aa4.86□□□□□ -1.63
SYNE1-239ENST00000545694 MYO9AB2RTY4 2548 aa4.86□□□□□ -1.63
SYNE1-239ENST00000545694 SERTM2A0A1B0GWG4 89 aa4.85□□□□□ -1.63
SYNE1-239ENST00000545694 WI2-2373I1.2A0A1W2PRP0 233 aa4.85□□□□□ -1.63
SYNE1-239ENST00000545694 TMEM89A2RUT3 159 aa4.85□□□□□ -1.63
SYNE1-239ENST00000545694 A6NDX4 124 aa4.85□□□□□ -1.63
SYNE1-239ENST00000545694 HELTA6NFD8 242 aa4.85□□□□□ -1.63
SYNE1-239ENST00000545694 FBLL1A6NHQ2 334 aaKnown RBP4.85□□□□□ -1.63
SYNE1-239ENST00000545694 C1orf196B1AJZ1 125 aa4.85□□□□□ -1.63
SYNE1-239ENST00000545694 H7BYZ3 331 aa4.85□□□□□ -1.63
SYNE1-239ENST00000545694 NUPL2O15504 423 aaKnown RBP4.85□□□□□ -1.63
SYNE1-239ENST00000545694 NDUFB4O95168 129 aa4.85□□□□□ -1.63
SYNE1-239ENST00000545694 IGHG2P01859 326 aa4.85□□□□□ -1.63
SYNE1-239ENST00000545694 OR10J4P0C629 311 aa4.85□□□□□ -1.63
SYNE1-239ENST00000545694 NBEAP1P0C6P0 100 aa4.85□□□□□ -1.63
SYNE1-239ENST00000545694 HIST1H1EP10412 219 aaKnown RBP4.85□□□□□ -1.63
SYNE1-239ENST00000545694 EGR2P11161 476 aaPredicted RBP4.85□□□□□ -1.63
SYNE1-239ENST00000545694 PLA2G2AP14555 144 aa4.85□□□□□ -1.63
SYNE1-239ENST00000545694 ATF4P18848 351 aaPredicted RBP4.85□□□□□ -1.63
SYNE1-239ENST00000545694 ORM2P19652 201 aa4.85□□□□□ -1.63
SYNE1-239ENST00000545694 RAB5AP20339 215 aa4.85□□□□□ -1.63
SYNE1-239ENST00000545694 GATA2P23769 480 aaPredicted RBP4.85□□□□□ -1.63
SYNE1-239ENST00000545694 CD24P25063 80 aa4.85□□□□□ -1.63
SYNE1-239ENST00000545694 ATP5G3P48201 142 aa4.85□□□□□ -1.63
SYNE1-239ENST00000545694 MEOX2P50222 304 aa4.85□□□□□ -1.63
SYNE1-239ENST00000545694 CNN1P51911 297 aaKnown RBP4.85□□□□□ -1.63
SYNE1-239ENST00000545694 UBE2G2P60604 165 aa4.85□□□□□ -1.63
SYNE1-239ENST00000545694 NDPQ00604 133 aa4.85□□□□□ -1.63
SYNE1-239ENST00000545694 ADIRFQ15847 76 aa4.85□□□□□ -1.63
SYNE1-239ENST00000545694 ZNF674Q2M3X9 581 aa4.85□□□□□ -1.63
SYNE1-239ENST00000545694 TIGITQ495A1 244 aa4.85□□□□□ -1.63
SYNE1-239ENST00000545694 ZNF343Q6P1L6 599 aa4.85□□□□□ -1.63
SYNE1-239ENST00000545694 KCNIP4Q6PIL6 250 aa4.85□□□□□ -1.63
SYNE1-239ENST00000545694 ZNF600Q6ZNG1 722 aa4.85□□□□□ -1.63
SYNE1-239ENST00000545694 LINC01551Q86U37 167 aa4.85□□□□□ -1.63
SYNE1-239ENST00000545694 OR4F17Q8NGA8 305 aa4.85□□□□□ -1.63
SYNE1-239ENST00000545694 PIFOQ8TCI5 191 aa4.85□□□□□ -1.63
SYNE1-239ENST00000545694 C2CD4CQ8TF44 421 aa4.85□□□□□ -1.63
SYNE1-239ENST00000545694 EEF1AKMT3Q96AZ1 226 aa4.85□□□□□ -1.63
SYNE1-239ENST00000545694 FXYD5Q96DB9 178 aa4.85□□□□□ -1.63
SYNE1-239ENST00000545694 RNF125Q96EQ8 232 aa4.85□□□□□ -1.63
SYNE1-239ENST00000545694 ZNF503Q96F45 646 aa4.85□□□□□ -1.63
SYNE1-239ENST00000545694 USMG5Q96IX5 58 aa4.85□□□□□ -1.63
SYNE1-239ENST00000545694 GPR82Q96P67 336 aa4.85□□□□□ -1.63
SYNE1-239ENST00000545694 SHANK2-AS3Q9BTD1 123 aa4.85□□□□□ -1.63
SYNE1-239ENST00000545694 CHRDL1Q9BU40 450 aa4.85□□□□□ -1.63
SYNE1-239ENST00000545694 C20orf24Q9BUV8 137 aa4.85□□□□□ -1.63
SYNE1-239ENST00000545694 SLC25A39Q9BZJ4 359 aaPredicted RBP4.85□□□□□ -1.63
SYNE1-239ENST00000545694 MRPL36Q9P0J6 103 aaKnown RBP4.85□□□□□ -1.63
SYNE1-239ENST00000545694 MLXQ9UH92 298 aa4.85□□□□□ -1.63
SYNE1-239ENST00000545694 FBXL7Q9UJT9 491 aa4.85□□□□□ -1.63
SYNE1-239ENST00000545694 CDC42EP3Q9UKI2 254 aa4.85□□□□□ -1.63
SYNE1-239ENST00000545694 YTHDF2Q9Y5A9 579 aaKnown RBP4.85□□□□□ -1.63
SYNE1-239ENST00000545694 CCDC168Q8NDH2 2452 aa4.85□□□□□ -1.63
SYNE1-239ENST00000545694 TEX15Q9BXT5 2789 aa4.85□□□□□ -1.63
SYNE1-239ENST00000545694 VPS13CQ709C8 3753 aa4.84□□□□□ -1.63
SYNE1-239ENST00000545694 TLN2Q9Y4G6 2542 aa4.84□□□□□ -1.63
SYNE1-239ENST00000545694 TRAV41A0A0B4J266 112 aa4.84□□□□□ -1.63
SYNE1-239ENST00000545694 A0A0G2JLM5 398 aa4.84□□□□□ -1.63
SYNE1-239ENST00000545694 TRBV6-1A0A0K0K1D8 114 aa4.84□□□□□ -1.63
SYNE1-239ENST00000545694 MDFIC2A0A1B0GVS7 189 aa4.84□□□□□ -1.63
SYNE1-239ENST00000545694 A1L4Q6 167 aa4.84□□□□□ -1.63
SYNE1-239ENST00000545694 H3BRN7 92 aa4.84□□□□□ -1.63
SYNE1-239ENST00000545694 K7EQM0 130 aa4.84□□□□□ -1.63
SYNE1-239ENST00000545694 AP4M1O00189 453 aa4.84□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms