RNA–Protein interactions for RNA: ENST00000541513.2

DDB1-219, Transcript of damage specific DNA binding protein 1, human

TSL 4

Gene DDB1, Length 958 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-219	ENST00000541513	POLR2J2	Q9GZM3	115 aa	Known RBP	4.09	□□□□□ -1.75
DDB1-219	ENST00000541513	POLR2J3	Q9H1A7	115 aa	Known RBP	4.09	□□□□□ -1.75
DDB1-219	ENST00000541513	RNASE7	Q9H1E1	156 aa	Known RBP	4.09	□□□□□ -1.75
DDB1-219	ENST00000541513	HIGD1A	Q9Y241	93 aa		4.09	□□□□□ -1.75
DDB1-219	ENST00000541513	ICE1	Q9Y2F5	2266 aa		4.09	□□□□□ -1.76
DDB1-219	ENST00000541513	USP9Y	O00507	2555 aa	Predicted RBP	4.08	□□□□□ -1.76
DDB1-219	ENST00000541513	TENM4	Q6N022	2769 aa		4.08	□□□□□ -1.76
DDB1-219	ENST00000541513	TRGV5	A0A0B4J1U4	118 aa		4.08	□□□□□ -1.76
DDB1-219	ENST00000541513	FAM236D	A0A1B0GTK5	79 aa		4.08	□□□□□ -1.76
DDB1-219	ENST00000541513	TMEM269	A0A1B0GVZ9	245 aa		4.08	□□□□□ -1.76
DDB1-219	ENST00000541513	CD300LB	A8K4G0	201 aa		4.08	□□□□□ -1.76
DDB1-219	ENST00000541513		J3QR89	54 aa		4.08	□□□□□ -1.76
DDB1-219	ENST00000541513	TRAF3IP2	O43734	574 aa	Predicted RBP	4.08	□□□□□ -1.76
DDB1-219	ENST00000541513	MPC2	O95563	127 aa		4.08	□□□□□ -1.76
DDB1-219	ENST00000541513	BGLAP	P02818	100 aa		4.08	□□□□□ -1.76
DDB1-219	ENST00000541513	SCT	P09683	121 aa		4.08	□□□□□ -1.76
DDB1-219	ENST00000541513	FAM236C	P0DP71	79 aa		4.08	□□□□□ -1.76
DDB1-219	ENST00000541513	FGF6	P10767	208 aa		4.08	□□□□□ -1.76
DDB1-219	ENST00000541513	GATA2	P23769	480 aa	Predicted RBP	4.08	□□□□□ -1.76
DDB1-219	ENST00000541513	POLR2I	P36954	125 aa	Known RBP	4.08	□□□□□ -1.76
DDB1-219	ENST00000541513	LHX2	P50458	406 aa		4.08	□□□□□ -1.76
DDB1-219	ENST00000541513	POLR2H	P52434	150 aa	Known RBP	4.08	□□□□□ -1.76
DDB1-219	ENST00000541513	ZNF136	P52737	540 aa		4.08	□□□□□ -1.76
DDB1-219	ENST00000541513	CTBP2	P56545	445 aa		4.08	□□□□□ -1.76
DDB1-219	ENST00000541513	HERVK_113	P61574	105 aa		4.08	□□□□□ -1.76
DDB1-219	ENST00000541513	GNB1	P62873	340 aa		4.08	□□□□□ -1.76
DDB1-219	ENST00000541513	MEF2C	Q06413	473 aa	Predicted RBP	4.08	□□□□□ -1.76
DDB1-219	ENST00000541513	ERCC8	Q13216	396 aa		4.08	□□□□□ -1.76
DDB1-219	ENST00000541513	KLF9	Q13886	244 aa	Predicted RBP	4.08	□□□□□ -1.76
DDB1-219	ENST00000541513	JOSD1	Q15040	202 aa	Predicted RBP	4.08	□□□□□ -1.76
DDB1-219	ENST00000541513	HMGN2P46	Q86SG4	172 aa		4.08	□□□□□ -1.76
DDB1-219	ENST00000541513	SMIM29	Q86T20	159 aa		4.08	□□□□□ -1.76
DDB1-219	ENST00000541513	ANKHD1	Q8IWZ3	2542 aa	Known RBP	4.08	□□□□□ -1.76
DDB1-219	ENST00000541513		Q8N1X5	172 aa		4.08	□□□□□ -1.76
DDB1-219	ENST00000541513	ZNF433	Q8N7K0	673 aa	Predicted RBP	4.08	□□□□□ -1.76
DDB1-219	ENST00000541513	OR4K5	Q8NGD3	323 aa		4.08	□□□□□ -1.76
DDB1-219	ENST00000541513	OR2T4	Q8NH00	348 aa		4.08	□□□□□ -1.76
DDB1-219	ENST00000541513	OR51H1	Q8NH63	302 aa		4.08	□□□□□ -1.76
DDB1-219	ENST00000541513	ITLN1	Q8WWA0	313 aa		4.08	□□□□□ -1.76
DDB1-219	ENST00000541513	PLEKHB2	Q96CS7	222 aa		4.08	□□□□□ -1.76
DDB1-219	ENST00000541513	SLC25A2	Q9BXI2	301 aa		4.08	□□□□□ -1.76
DDB1-219	ENST00000541513	OR2H1	Q9GZK4	316 aa		4.08	□□□□□ -1.76
DDB1-219	ENST00000541513	GTSF1L	Q9H1H1	148 aa		4.08	□□□□□ -1.76
DDB1-219	ENST00000541513	COMMD3	Q9UBI1	195 aa		4.08	□□□□□ -1.76
DDB1-219	ENST00000541513	CTSZ	Q9UBR2	303 aa		4.08	□□□□□ -1.76
DDB1-219	ENST00000541513	ZNF835	Q9Y2P0	537 aa		4.08	□□□□□ -1.76
DDB1-219	ENST00000541513	WASHC3	Q9Y3C0	194 aa		4.08	□□□□□ -1.76
DDB1-219	ENST00000541513	INSIG2	Q9Y5U4	225 aa		4.08	□□□□□ -1.76
DDB1-219	ENST00000541513	PKDREJ	Q9NTG1	2253 aa		4.07	□□□□□ -1.76
DDB1-219	ENST00000541513	IGLV8-61	A0A075B6I0	122 aa		4.07	□□□□□ -1.76
DDB1-219	ENST00000541513	IGHV3OR16-10	A0A075B7F0	116 aa		4.07	□□□□□ -1.76
DDB1-219	ENST00000541513	DUXB	A0A1W2PPF3	345 aa		4.07	□□□□□ -1.76
DDB1-219	ENST00000541513		J3QRK9	145 aa		4.07	□□□□□ -1.76
DDB1-219	ENST00000541513	ISLR	O14498	428 aa		4.07	□□□□□ -1.76
DDB1-219	ENST00000541513	NDUFC2	O95298	119 aa		4.07	□□□□□ -1.76
DDB1-219	ENST00000541513	OR2H2	O95918	312 aa		4.07	□□□□□ -1.76
DDB1-219	ENST00000541513	PATE4	P0C8F1	98 aa		4.07	□□□□□ -1.76
DDB1-219	ENST00000541513	PGAM2	P15259	253 aa		4.07	□□□□□ -1.76
DDB1-219	ENST00000541513	HOXB6	P17509	224 aa	Known RBP	4.07	□□□□□ -1.76
DDB1-219	ENST00000541513	FKBP2	P26885	142 aa	Known RBP	4.07	□□□□□ -1.76
DDB1-219	ENST00000541513	DEFA1	P59665	94 aa		4.07	□□□□□ -1.76
DDB1-219	ENST00000541513	DEFA3	P59666	94 aa		4.07	□□□□□ -1.76
DDB1-219	ENST00000541513	S100A10	P60903	97 aa		4.07	□□□□□ -1.76
DDB1-219	ENST00000541513	EIF5A	P63241	154 aa	Known RBP	4.07	□□□□□ -1.76
DDB1-219	ENST00000541513	REG3A	Q06141	175 aa		4.07	□□□□□ -1.76
DDB1-219	ENST00000541513	HSD52	Q0P140	79 aa		4.07	□□□□□ -1.76
DDB1-219	ENST00000541513	FOXF1	Q12946	379 aa		4.07	□□□□□ -1.76
DDB1-219	ENST00000541513	ARFRP1	Q13795	201 aa		4.07	□□□□□ -1.76
DDB1-219	ENST00000541513	GLYATL3	Q5SZD4	288 aa		4.07	□□□□□ -1.76
DDB1-219	ENST00000541513	GLT8D1	Q68CQ7	371 aa		4.07	□□□□□ -1.76
DDB1-219	ENST00000541513	IZUMO2	Q6UXV1	221 aa		4.07	□□□□□ -1.76
DDB1-219	ENST00000541513	MOB1B	Q7L9L4	216 aa		4.07	□□□□□ -1.76
DDB1-219	ENST00000541513	SLC35E3	Q7Z769	313 aa		4.07	□□□□□ -1.76
DDB1-219	ENST00000541513	ZNF664	Q8N3J9	261 aa		4.07	□□□□□ -1.76
DDB1-219	ENST00000541513	TMEM229B	Q8NBD8	167 aa		4.07	□□□□□ -1.76
DDB1-219	ENST00000541513	LY6G5B	Q8NDX9	201 aa		4.07	□□□□□ -1.76
DDB1-219	ENST00000541513	ZNF563	Q8TA94	476 aa		4.07	□□□□□ -1.76
DDB1-219	ENST00000541513	FAM57A	Q8TBR7	257 aa		4.07	□□□□□ -1.76
DDB1-219	ENST00000541513	PHYHIPL	Q96FC7	376 aa		4.07	□□□□□ -1.76
DDB1-219	ENST00000541513	TSPAN32	Q96QS1	320 aa		4.07	□□□□□ -1.76
DDB1-219	ENST00000541513	WFDC6	Q9BQY6	131 aa		4.07	□□□□□ -1.76
DDB1-219	ENST00000541513	THTPA	Q9BU02	230 aa		4.07	□□□□□ -1.76
DDB1-219	ENST00000541513	TMEM243	Q9BU79	118 aa		4.07	□□□□□ -1.76
DDB1-219	ENST00000541513	MRPL20	Q9BYC9	149 aa	Known RBP	4.07	□□□□□ -1.76
DDB1-219	ENST00000541513	OR52D1	Q9H346	318 aa		4.07	□□□□□ -1.76
DDB1-219	ENST00000541513	PRR14L	Q5THK1	2151 aa		4.07	□□□□□ -1.76
DDB1-219	ENST00000541513	ADGRG4	Q8IZF6	3080 aa		4.07	□□□□□ -1.76
DDB1-219	ENST00000541513	COL12A1	Q99715	3063 aa		4.07	□□□□□ -1.76
DDB1-219	ENST00000541513	ABCA4	P78363	2273 aa		4.06	□□□□□ -1.76
DDB1-219	ENST00000541513	RELN	P78509	3460 aa		4.06	□□□□□ -1.76
DDB1-219	ENST00000541513	HCFC1	P51610	2035 aa		4.06	□□□□□ -1.76
DDB1-219	ENST00000541513	TMED7-TICAM2	A0A0A6YYA0	188 aa		4.06	□□□□□ -1.76
DDB1-219	ENST00000541513	TRAV26-2	A0A0B4J265	109 aa		4.06	□□□□□ -1.76
DDB1-219	ENST00000541513	LOC100130705	A0A1B0GUX0	176 aa		4.06	□□□□□ -1.76
DDB1-219	ENST00000541513		A0A1B0GWA3	101 aa		4.06	□□□□□ -1.76
DDB1-219	ENST00000541513	BORCS8-MEF2B	H3BNR1	382 aa	Predicted RBP	4.06	□□□□□ -1.76
DDB1-219	ENST00000541513	PDCD5	O14737	125 aa		4.06	□□□□□ -1.76
DDB1-219	ENST00000541513	ZNF207	O43670	478 aa	Known RBP	4.06	□□□□□ -1.76
DDB1-219	ENST00000541513	ANGPTL7	O43827	346 aa		4.06	□□□□□ -1.76
DDB1-219	ENST00000541513	ZNF682	O95780	498 aa		4.06	□□□□□ -1.76

Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms