RNA–Protein interactions for RNA: ENST00000541363.5

HMGA2-210, Transcript of high mobility group AT-hook 2, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA2, Length 8,094 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA2-210ENST00000541363 ATP1A1-AS1Q5TC04 95 aa12.72□□□□□ -0.37
HMGA2-210ENST00000541363 PMS2P5A8MQ11 134 aa12.72□□□□□ -0.37
HMGA2-210ENST00000541363 SPSB3Q6PJ21 355 aa12.72□□□□□ -0.37
HMGA2-210ENST00000541363 AKAP6Q13023 2319 aa12.72□□□□□ -0.37
HMGA2-210ENST00000541363 TRAV12-1A0A0B4J245 112 aa12.72□□□□□ -0.37
HMGA2-210ENST00000541363 DSCR9P59020 149 aa12.72□□□□□ -0.37
HMGA2-210ENST00000541363 INTS1Q8N201 2190 aaKnown RBP12.72□□□□□ -0.37
HMGA2-210ENST00000541363 FBLIM1Q8WUP2 373 aa12.72□□□□□ -0.37
HMGA2-210ENST00000541363 NABP1Q96AH0 204 aa12.72□□□□□ -0.37
HMGA2-210ENST00000541363 SH2D1AO60880 128 aa12.72□□□□□ -0.37
HMGA2-210ENST00000541363 THBDP07204 575 aa12.72□□□□□ -0.37
HMGA2-210ENST00000541363 CDKN1AP38936 164 aa12.72□□□□□ -0.37
HMGA2-210ENST00000541363 TRAV40A0A0B4J280 105 aa12.71□□□□□ -0.37
HMGA2-210ENST00000541363 CCL3L1P16619 93 aa12.71□□□□□ -0.37
HMGA2-210ENST00000541363 C22orf46C9J442 243 aa12.71□□□□□ -0.37
HMGA2-210ENST00000541363 IGFBP3P17936 291 aaPredicted RBP12.71□□□□□ -0.37
HMGA2-210ENST00000541363 C15orf32Q32M92 178 aa12.71□□□□□ -0.37
HMGA2-210ENST00000541363 ITGBL1O95965 494 aaPredicted RBP12.71□□□□□ -0.37
HMGA2-210ENST00000541363 NBL1P41271 181 aa12.71□□□□□ -0.38
HMGA2-210ENST00000541363 HIST3H2BBQ8N257 126 aa12.71□□□□□ -0.38
HMGA2-210ENST00000541363 EXOC3-AS1Q8N2X6 119 aa12.71□□□□□ -0.38
HMGA2-210ENST00000541363 C5orf67F2Z3F1 127 aa12.71□□□□□ -0.38
HMGA2-210ENST00000541363 CD160O95971 181 aa12.71□□□□□ -0.38
HMGA2-210ENST00000541363 ZNF319Q9P2F9 582 aa12.71□□□□□ -0.38
HMGA2-210ENST00000541363 F8VVB4 439 aa12.7□□□□□ -0.38
HMGA2-210ENST00000541363 F8VWA3 439 aa12.7□□□□□ -0.38
HMGA2-210ENST00000541363 SYS1-DBNDD2H3BUS1 97 aa12.7□□□□□ -0.38
HMGA2-210ENST00000541363 STRCQ7RTU9 1775 aa12.7□□□□□ -0.38
HMGA2-210ENST00000541363 IGHV1-2P23083 117 aa12.7□□□□□ -0.38
HMGA2-210ENST00000541363 SMIM2Q9BVW6 85 aa12.7□□□□□ -0.38
HMGA2-210ENST00000541363 WNK3Q9BYP7 1800 aa12.7□□□□□ -0.38
HMGA2-210ENST00000541363 PSG7Q13046 419 aa12.7□□□□□ -0.38
HMGA2-210ENST00000541363 SCRT2Q9NQ03 307 aa12.7□□□□□ -0.38
HMGA2-210ENST00000541363 TRBV6-7A0A0A0MS04 114 aa12.7□□□□□ -0.38
HMGA2-210ENST00000541363 CRLF1O75462 422 aa12.7□□□□□ -0.38
HMGA2-210ENST00000541363 FCN3O75636 299 aa12.7□□□□□ -0.38
HMGA2-210ENST00000541363 TRPT1Q86TN4 253 aaKnown RBP12.7□□□□□ -0.38
HMGA2-210ENST00000541363 ANXA2RQ3ZCQ2 193 aa12.69□□□□□ -0.38
HMGA2-210ENST00000541363 RNF166Q96A37 237 aaPredicted RBP12.69□□□□□ -0.38
HMGA2-210ENST00000541363 SELENOKQ9Y6D0 94 aa12.69□□□□□ -0.38
HMGA2-210ENST00000541363 TIMM23O14925 209 aa12.69□□□□□ -0.38
HMGA2-210ENST00000541363 PPP1R32Q7Z5V6 425 aa12.69□□□□□ -0.38
HMGA2-210ENST00000541363 FAM181AQ8N9Y4 354 aa12.69□□□□□ -0.38
HMGA2-210ENST00000541363 RMI2Q96E14 147 aa12.69□□□□□ -0.38
HMGA2-210ENST00000541363 AMBPP02760 352 aa12.69□□□□□ -0.38
HMGA2-210ENST00000541363 LCNL1Q6ZST4 164 aa12.69□□□□□ -0.38
HMGA2-210ENST00000541363 RBBP6Q7Z6E9 1792 aaKnown RBP12.69□□□□□ -0.38
HMGA2-210ENST00000541363 CTSBP07858 339 aa12.69□□□□□ -0.38
HMGA2-210ENST00000541363 LINC00271P0C7V0 271 aa12.69□□□□□ -0.38
HMGA2-210ENST00000541363 C14orf178Q8N769 122 aaPredicted RBP12.69□□□□□ -0.38
HMGA2-210ENST00000541363 NUP35Q8NFH5 326 aa12.69□□□□□ -0.38
HMGA2-210ENST00000541363 UBE2E2Q96LR5 201 aa12.69□□□□□ -0.38
HMGA2-210ENST00000541363 ARFGEF3Q5TH69 2177 aa12.69□□□□□ -0.38
HMGA2-210ENST00000541363 SAP25Q8TEE9 199 aa12.68□□□□□ -0.38
HMGA2-210ENST00000541363 C1orf43Q9BWL3 253 aa12.68□□□□□ -0.38
HMGA2-210ENST00000541363 TRBV25-1A0A075B6N4 114 aa12.68□□□□□ -0.38
HMGA2-210ENST00000541363 MED12Q93074 2177 aa12.68□□□□□ -0.38
HMGA2-210ENST00000541363 LINC01590Q5TEZ4 76 aa12.68□□□□□ -0.38
HMGA2-210ENST00000541363 CEACAM1P13688 526 aa12.68□□□□□ -0.38
HMGA2-210ENST00000541363 KLF5Q13887 457 aaPredicted RBP12.68□□□□□ -0.38
HMGA2-210ENST00000541363 SLC25A45Q8N413 288 aa12.68□□□□□ -0.38
HMGA2-210ENST00000541363 A0A1W2PPI3 338 aa12.68□□□□□ -0.38
HMGA2-210ENST00000541363 C9orf139Q6ZV77 190 aa12.68□□□□□ -0.38
HMGA2-210ENST00000541363 RPUSD1Q9UJJ7 312 aaKnown RBP12.68□□□□□ -0.38
HMGA2-210ENST00000541363 FAM186AA6NE01 2351 aa12.68□□□□□ -0.38
HMGA2-210ENST00000541363 SUPT4H1P63272 117 aaKnown RBP12.68□□□□□ -0.38
HMGA2-210ENST00000541363 PLAC1Q9HBJ0 212 aa12.68□□□□□ -0.38
HMGA2-210ENST00000541363 MPV17L2Q567V2 206 aa12.67□□□□□ -0.38
HMGA2-210ENST00000541363 LIME1Q9H400 295 aa12.67□□□□□ -0.38
HMGA2-210ENST00000541363 LCN12Q6JVE5 192 aa12.67□□□□□ -0.38
HMGA2-210ENST00000541363 ATRAIDQ6UW56 229 aa12.67□□□□□ -0.38
HMGA2-210ENST00000541363 PPDPFLQ8WWR9 84 aa12.67□□□□□ -0.38
HMGA2-210ENST00000541363 TNRC6CQ9HCJ0 1690 aaKnown RBP12.67□□□□□ -0.38
HMGA2-210ENST00000541363 THADAQ6YHU6 1953 aa12.67□□□□□ -0.38
HMGA2-210ENST00000541363 STRCP1A6NGW2 1772 aa12.67□□□□□ -0.38
HMGA2-210ENST00000541363 VMO1Q7Z5L0 202 aa12.67□□□□□ -0.38
HMGA2-210ENST00000541363 TRGV9Q99603 122 aa12.67□□□□□ -0.38
HMGA2-210ENST00000541363 SIGLEC12Q96PQ1 595 aa12.66□□□□□ -0.38
HMGA2-210ENST00000541363 PTPRFP10586 1907 aa12.66□□□□□ -0.38
HMGA2-210ENST00000541363 RNF222A6NCQ9 220 aa12.66□□□□□ -0.38
HMGA2-210ENST00000541363 PFN2P35080 140 aa12.66□□□□□ -0.38
HMGA2-210ENST00000541363 GAS1P54826 345 aa12.66□□□□□ -0.38
HMGA2-210ENST00000541363 TMEM141Q96I45 108 aa12.66□□□□□ -0.38
HMGA2-210ENST00000541363 CLPSP04118 112 aa12.66□□□□□ -0.38
HMGA2-210ENST00000541363 SRSF3P84103 164 aaKnown RBP12.66□□□□□ -0.38
HMGA2-210ENST00000541363 BAALCQ8WXS3 180 aa12.66□□□□□ -0.38
HMGA2-210ENST00000541363 KLHL30-AS1Q8NEE0 82 aa12.66□□□□□ -0.38
HMGA2-210ENST00000541363 USMG5Q96IX5 58 aa12.66□□□□□ -0.38
HMGA2-210ENST00000541363 RNF126Q9BV68 326 aa12.66□□□□□ -0.38
HMGA2-210ENST00000541363 A0A087WWL8 130 aa12.66□□□□□ -0.38
HMGA2-210ENST00000541363 LY75O60449 1722 aa12.66□□□□□ -0.38
HMGA2-210ENST00000541363 CELA3BP08861 270 aa12.66□□□□□ -0.38
HMGA2-210ENST00000541363 MDS2Q8NDY4 140 aa12.66□□□□□ -0.38
HMGA2-210ENST00000541363 FAM223BA6NKX1 122 aa12.66□□□□□ -0.38
HMGA2-210ENST00000541363 DEFB130BP0DP73 79 aa12.66□□□□□ -0.38
HMGA2-210ENST00000541363 DEFB130AP0DP74 79 aa12.66□□□□□ -0.38
HMGA2-210ENST00000541363 FAM223AQ8IWN6 122 aa12.66□□□□□ -0.38
HMGA2-210ENST00000541363 MRPL27Q9P0M9 148 aaKnown RBP12.66□□□□□ -0.38
HMGA2-210ENST00000541363 RNF114Q9Y508 228 aa12.66□□□□□ -0.38
HMGA2-210ENST00000541363 TRAV13-2A0A0B4J235 113 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms