RNA–Protein interactions for RNA: ENST00000541005.1

LTBR-208, Transcript of lymphotoxin beta receptor, humanhuman

TSL 2

Gene LTBR, Length 583 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBR-208ENST00000541005 MGAT4CQ9UBM8 478 aa9.66□□□□□ -0.86
LTBR-208ENST00000541005 LSM5Q9Y4Y9 91 aaKnown RBP9.66□□□□□ -0.86
LTBR-208ENST00000541005 DNAH7Q8WXX0 4024 aa9.66□□□□□ -0.86
LTBR-208ENST00000541005 SMCO3A2RU48 225 aa9.65□□□□□ -0.86
LTBR-208ENST00000541005 ZNF688P0C7X2 276 aa9.65□□□□□ -0.86
LTBR-208ENST00000541005 RPL35AP18077 110 aaKnown RBP9.65□□□□□ -0.86
LTBR-208ENST00000541005 PVALBP20472 110 aaPredicted RBP9.65□□□□□ -0.86
LTBR-208ENST00000541005 PLP1P60201 277 aa9.65□□□□□ -0.86
LTBR-208ENST00000541005 RRAS2P62070 204 aaPredicted RBP9.65□□□□□ -0.86
LTBR-208ENST00000541005 SELENOTP62341 195 aa9.65□□□□□ -0.86
LTBR-208ENST00000541005 RAB32Q13637 225 aa9.65□□□□□ -0.86
LTBR-208ENST00000541005 TMEM182Q6ZP80 229 aaPredicted RBP9.65□□□□□ -0.86
LTBR-208ENST00000541005 NPVFQ9HCQ7 196 aa9.65□□□□□ -0.86
LTBR-208ENST00000541005 LYRM2Q9NU23 88 aaPredicted RBP9.65□□□□□ -0.86
LTBR-208ENST00000541005 S100A7P31151 101 aa9.64□□□□□ -0.87
LTBR-208ENST00000541005 S100A10P60903 97 aa9.64□□□□□ -0.87
LTBR-208ENST00000541005 LEMD1Q68G75 181 aa9.64□□□□□ -0.87
LTBR-208ENST00000541005 TEPPQ6URK8 271 aa9.64□□□□□ -0.87
LTBR-208ENST00000541005 RNF183Q96D59 192 aa9.64□□□□□ -0.87
LTBR-208ENST00000541005 NMES1Q9C002 83 aa9.64□□□□□ -0.87
LTBR-208ENST00000541005 SOCS3O14543 225 aa9.63□□□□□ -0.87
LTBR-208ENST00000541005 GOSR2O14653 212 aa9.63□□□□□ -0.87
LTBR-208ENST00000541005 SPRY2O43597 315 aa9.63□□□□□ -0.87
LTBR-208ENST00000541005 GATA2P23769 480 aaPredicted RBP9.63□□□□□ -0.87
LTBR-208ENST00000541005 CAV2P51636 162 aa9.63□□□□□ -0.87
LTBR-208ENST00000541005 SNRPD3P62318 126 aaKnown RBP9.63□□□□□ -0.87
LTBR-208ENST00000541005 SLC38A11Q08AI6 406 aa9.63□□□□□ -0.87
LTBR-208ENST00000541005 VWC2Q2TAL6 325 aa9.63□□□□□ -0.87
LTBR-208ENST00000541005 DEFB135Q30KP9 77 aa9.63□□□□□ -0.87
LTBR-208ENST00000541005 SAMD13Q5VXD3 122 aa9.63□□□□□ -0.87
LTBR-208ENST00000541005 TRPT1Q86TN4 253 aaKnown RBP9.63□□□□□ -0.87
LTBR-208ENST00000541005 ZNF546Q86UE3 836 aa9.63□□□□□ -0.87
LTBR-208ENST00000541005 OR8I2Q8N0Y5 310 aa9.63□□□□□ -0.87
LTBR-208ENST00000541005 PPP1R14BQ96C90 147 aa9.63□□□□□ -0.87
LTBR-208ENST00000541005 TMEM147Q9BVK8 224 aa9.63□□□□□ -0.87
LTBR-208ENST00000541005 CSTL1Q9H114 145 aa9.63□□□□□ -0.87
LTBR-208ENST00000541005 ZNF98A6NK75 572 aa9.62□□□□□ -0.87
LTBR-208ENST00000541005 H3BRN7 92 aa9.62□□□□□ -0.87
LTBR-208ENST00000541005 PTTG1O95997 202 aa9.62□□□□□ -0.87
LTBR-208ENST00000541005 LINC00869P0C866 280 aa9.62□□□□□ -0.87
LTBR-208ENST00000541005 ORM2P19652 201 aa9.62□□□□□ -0.87
LTBR-208ENST00000541005 PSMB3P49720 205 aa9.62□□□□□ -0.87
LTBR-208ENST00000541005 SULT1A1P50225 295 aa9.62□□□□□ -0.87
LTBR-208ENST00000541005 BCAP31P51572 246 aa9.62□□□□□ -0.87
LTBR-208ENST00000541005 CYCSP99999 105 aaKnown RBP9.62□□□□□ -0.87
LTBR-208ENST00000541005 PSMG4Q5JS54 123 aa9.62□□□□□ -0.87
LTBR-208ENST00000541005 PXDC1Q5TGL8 231 aa9.62□□□□□ -0.87
LTBR-208ENST00000541005 OR1B1Q8NGR6 318 aa9.62□□□□□ -0.87
LTBR-208ENST00000541005 GATAD1Q8WUU5 269 aa9.62□□□□□ -0.87
LTBR-208ENST00000541005 GPR82Q96P67 336 aa9.62□□□□□ -0.87
LTBR-208ENST00000541005 SHANK2-AS3Q9BTD1 123 aa9.62□□□□□ -0.87
LTBR-208ENST00000541005 SLC25A32Q9H2D1 315 aa9.62□□□□□ -0.87
LTBR-208ENST00000541005 IGSF23A1L1A6 192 aa9.61□□□□□ -0.87
LTBR-208ENST00000541005 FAM24AA6NFZ4 105 aa9.61□□□□□ -0.87
LTBR-208ENST00000541005 AGPAT2O15120 278 aa9.61□□□□□ -0.87
LTBR-208ENST00000541005 HYPMO75409 117 aa9.61□□□□□ -0.87
LTBR-208ENST00000541005 CST7O76096 145 aa9.61□□□□□ -0.87
LTBR-208ENST00000541005 SPP1P10451 314 aa9.61□□□□□ -0.87
LTBR-208ENST00000541005 LYL1P12980 280 aa9.61□□□□□ -0.87
LTBR-208ENST00000541005 GALR1P47211 349 aa9.61□□□□□ -0.87
LTBR-208ENST00000541005 MEOX2P50222 304 aa9.61□□□□□ -0.87
LTBR-208ENST00000541005 H2BFSP57053 126 aa9.61□□□□□ -0.87
LTBR-208ENST00000541005 TMEM41BQ5BJD5 291 aa9.61□□□□□ -0.87
LTBR-208ENST00000541005 CASC10Q5T4H9 136 aa9.61□□□□□ -0.87
LTBR-208ENST00000541005 STX12Q86Y82 276 aa9.61□□□□□ -0.87
LTBR-208ENST00000541005 STHQ8IWL8 128 aa9.61□□□□□ -0.87
LTBR-208ENST00000541005 TMEM252Q8N6L7 170 aa9.61□□□□□ -0.87
LTBR-208ENST00000541005 MGST2Q99735 147 aa9.61□□□□□ -0.87
LTBR-208ENST00000541005 SLC25A39Q9BZJ4 359 aaPredicted RBP9.61□□□□□ -0.87
LTBR-208ENST00000541005 HIGD1AQ9Y241 93 aa9.61□□□□□ -0.87
LTBR-208ENST00000541005 ISLRO14498 428 aa9.6□□□□□ -0.87
LTBR-208ENST00000541005 SIX6O95475 246 aa9.6□□□□□ -0.87
LTBR-208ENST00000541005 GIG44P09565 113 aaPredicted RBP9.6□□□□□ -0.87
LTBR-208ENST00000541005 ATF4P18848 351 aaPredicted RBP9.6□□□□□ -0.87
LTBR-208ENST00000541005 S100A11P31949 105 aa9.6□□□□□ -0.87
LTBR-208ENST00000541005 RAP2BP61225 183 aa9.6□□□□□ -0.87
LTBR-208ENST00000541005 HBG1P69891 147 aa9.6□□□□□ -0.87
LTBR-208ENST00000541005 HBG2P69892 147 aa9.6□□□□□ -0.87
LTBR-208ENST00000541005 ACTL10Q5JWF8 245 aa9.6□□□□□ -0.87
LTBR-208ENST00000541005 MORN3Q6PF18 240 aaPredicted RBP9.6□□□□□ -0.87
LTBR-208ENST00000541005 S100A7AQ86SG5 101 aa9.6□□□□□ -0.87
LTBR-208ENST00000541005 TMEM217Q8N7C4 229 aa9.6□□□□□ -0.87
LTBR-208ENST00000541005 C17orf77Q96MU5 243 aa9.6□□□□□ -0.87
LTBR-208ENST00000541005 SCRT1Q9BWW7 348 aa9.6□□□□□ -0.87
LTBR-208ENST00000541005 UQCC1Q9NVA1 299 aa9.6□□□□□ -0.87
LTBR-208ENST00000541005 WDR83OSQ9Y284 106 aa9.6□□□□□ -0.87
LTBR-208ENST00000541005 KNCNA6PVL3 124 aa9.59□□□□□ -0.87
LTBR-208ENST00000541005 E5RGE8 158 aa9.59□□□□□ -0.87
LTBR-208ENST00000541005 SSNA1O43805 119 aa9.59□□□□□ -0.87
LTBR-208ENST00000541005 CA1P00915 261 aaPredicted RBP9.59□□□□□ -0.87
LTBR-208ENST00000541005 HLA-DRB4P13762 266 aa9.59□□□□□ -0.87
LTBR-208ENST00000541005 RPL7P18124 248 aaKnown RBP9.59□□□□□ -0.87
LTBR-208ENST00000541005 ID1P41134 155 aa9.59□□□□□ -0.87
LTBR-208ENST00000541005 IL17DQ8TAD2 202 aa9.59□□□□□ -0.87
LTBR-208ENST00000541005 CHAC2Q8WUX2 184 aa9.59□□□□□ -0.87
LTBR-208ENST00000541005 SLC25A22Q9H936 323 aa9.59□□□□□ -0.87
LTBR-208ENST00000541005 DOK5Q9P104 306 aa9.59□□□□□ -0.87
LTBR-208ENST00000541005 RNF24Q9Y225 148 aa9.59□□□□□ -0.87
LTBR-208ENST00000541005 HLA-DRB4X5D2U9 266 aa9.59□□□□□ -0.87
LTBR-208ENST00000541005 CSMD3Q7Z407 3707 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms