RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 MZT2BQ6NZ67 158 aa10.39□□□□□ -0.75
USP28-209ENST00000540925 C12orf45Q8N5I9 185 aaPredicted RBP10.39□□□□□ -0.75
USP28-209ENST00000540925 C17orf77Q96MU5 243 aa10.39□□□□□ -0.75
USP28-209ENST00000540925 PBDC1Q9BVG4 233 aa10.39□□□□□ -0.75
USP28-209ENST00000540925 AGRNO00468 2067 aa10.38□□□□□ -0.75
USP28-209ENST00000540925 K7EPK0 472 aa10.38□□□□□ -0.75
USP28-209ENST00000540925 ARL16Q0P5N6 197 aa10.38□□□□□ -0.75
USP28-209ENST00000540925 GATAD1Q8WUU5 269 aa10.38□□□□□ -0.75
USP28-209ENST00000540925 KRTAP17-1Q9BYP8 105 aa10.38□□□□□ -0.75
USP28-209ENST00000540925 GSKIPQ9P0R6 139 aa10.38□□□□□ -0.75
USP28-209ENST00000540925 A0A0J9YWU9 116 aa10.37□□□□□ -0.75
USP28-209ENST00000540925 KNCNA6PVL3 124 aa10.37□□□□□ -0.75
USP28-209ENST00000540925 METTL15P1P0C7V9 234 aa10.37□□□□□ -0.75
USP28-209ENST00000540925 GATA2P23769 480 aaPredicted RBP10.37□□□□□ -0.75
USP28-209ENST00000540925 PLP1P60201 277 aa10.37□□□□□ -0.75
USP28-209ENST00000540925 AKR1C1Q04828 323 aa10.37□□□□□ -0.75
USP28-209ENST00000540925 IL17DQ8TAD2 202 aa10.37□□□□□ -0.75
USP28-209ENST00000540925 BATF3Q9NR55 127 aa10.37□□□□□ -0.75
USP28-209ENST00000540925 FBXL17Q9UF56 701 aa10.37□□□□□ -0.75
USP28-209ENST00000540925 PFDN2Q9UHV9 154 aa10.37□□□□□ -0.75
USP28-209ENST00000540925 SCGB1D2O95969 90 aa10.36□□□□□ -0.75
USP28-209ENST00000540925 CA1P00915 261 aaPredicted RBP10.36□□□□□ -0.75
USP28-209ENST00000540925 PSMG4Q5JS54 123 aa10.36□□□□□ -0.75
USP28-209ENST00000540925 CYP2G1PQ6ZSU1 146 aa10.36□□□□□ -0.75
USP28-209ENST00000540925 STHQ8IWL8 128 aa10.36□□□□□ -0.75
USP28-209ENST00000540925 BPIFCQ8NFQ6 507 aa10.36□□□□□ -0.75
USP28-209ENST00000540925 C2orf50Q96LR7 162 aa10.36□□□□□ -0.75
USP28-209ENST00000540925 GGACTQ9BVM4 153 aa10.36□□□□□ -0.75
USP28-209ENST00000540925 VPS13DQ5THJ4 4388 aa10.36□□□□□ -0.75
USP28-209ENST00000540925 ZNF98A6NK75 572 aa10.35□□□□□ -0.75
USP28-209ENST00000540925 DEDDO75618 318 aa10.35□□□□□ -0.75
USP28-209ENST00000540925 SPP1P10451 314 aa10.35□□□□□ -0.75
USP28-209ENST00000540925 C4BPBP20851 252 aa10.35□□□□□ -0.75
USP28-209ENST00000540925 SNRPD3P62318 126 aaKnown RBP10.35□□□□□ -0.75
USP28-209ENST00000540925 NRARPQ7Z6K4 114 aa10.35□□□□□ -0.75
USP28-209ENST00000540925 OR10P1Q8NGE3 313 aa10.35□□□□□ -0.75
USP28-209ENST00000540925 SLC25A32Q9H2D1 315 aa10.35□□□□□ -0.75
USP28-209ENST00000540925 NPVFQ9HCQ7 196 aa10.35□□□□□ -0.75
USP28-209ENST00000540925 LCE6AA0A183 80 aa10.34□□□□□ -0.75
USP28-209ENST00000540925 H3BMM0 161 aa10.34□□□□□ -0.75
USP28-209ENST00000540925 PSMB3P49720 205 aa10.34□□□□□ -0.75
USP28-209ENST00000540925 RRAS2P62070 204 aaPredicted RBP10.34□□□□□ -0.75
USP28-209ENST00000540925 SELENOTP62341 195 aa10.34□□□□□ -0.75
USP28-209ENST00000540925 TMEM41BQ5BJD5 291 aa10.34□□□□□ -0.75
USP28-209ENST00000540925 ACTL10Q5JWF8 245 aa10.34□□□□□ -0.75
USP28-209ENST00000540925 MORN3Q6PF18 240 aaPredicted RBP10.34□□□□□ -0.75
USP28-209ENST00000540925 CSNK1G2-AS1Q8NCQ2 148 aa10.34□□□□□ -0.75
USP28-209ENST00000540925 ENKURQ8TC29 256 aa10.34□□□□□ -0.75
USP28-209ENST00000540925 C11orf68Q9H3H3 251 aaKnown RBP10.34□□□□□ -0.75
USP28-209ENST00000540925 SMCO3A2RU48 225 aa10.33□□□□□ -0.76
USP28-209ENST00000540925 C5orf51A6NDU8 294 aa10.33□□□□□ -0.76
USP28-209ENST00000540925 FAM25EA8MYX2 175 aa10.33□□□□□ -0.76
USP28-209ENST00000540925 H3BRN7 92 aa10.33□□□□□ -0.76
USP28-209ENST00000540925 HLA-DRB4P13762 266 aa10.33□□□□□ -0.76
USP28-209ENST00000540925 ORM2P19652 201 aa10.33□□□□□ -0.76
USP28-209ENST00000540925 TEPPQ6URK8 271 aa10.33□□□□□ -0.76
USP28-209ENST00000540925 OR8I2Q8N0Y5 310 aa10.33□□□□□ -0.76
USP28-209ENST00000540925 OR11H2Q8NH07 326 aa10.33□□□□□ -0.76
USP28-209ENST00000540925 RARRES2Q99969 163 aa10.33□□□□□ -0.76
USP28-209ENST00000540925 MARVELD1Q9BSK0 173 aa10.33□□□□□ -0.76
USP28-209ENST00000540925 SHANK2-AS3Q9BTD1 123 aa10.33□□□□□ -0.76
USP28-209ENST00000540925 HLA-DRB4X5D2U9 266 aa10.33□□□□□ -0.76
USP28-209ENST00000540925 ZNF705EA8MWA4 302 aaPredicted RBP10.32□□□□□ -0.76
USP28-209ENST00000540925 ISLRO14498 428 aa10.32□□□□□ -0.76
USP28-209ENST00000540925 LINC00869P0C866 280 aa10.32□□□□□ -0.76
USP28-209ENST00000540925 SLC38A11Q08AI6 406 aa10.32□□□□□ -0.76
USP28-209ENST00000540925 RAB32Q13637 225 aa10.32□□□□□ -0.76
USP28-209ENST00000540925 VWC2Q2TAL6 325 aa10.32□□□□□ -0.76
USP28-209ENST00000540925 GDF5OSQ5U4N7 250 aa10.32□□□□□ -0.76
USP28-209ENST00000540925 GSG1LQ6UXU4 331 aa10.32□□□□□ -0.76
USP28-209ENST00000540925 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa10.32□□□□□ -0.76
USP28-209ENST00000540925 PATE2Q6UY27 113 aa10.32□□□□□ -0.76
USP28-209ENST00000540925 Q8NAQ8 132 aa10.32□□□□□ -0.76
USP28-209ENST00000540925 OR1B1Q8NGR6 318 aa10.32□□□□□ -0.76
USP28-209ENST00000540925 PPP1R14BQ96C90 147 aa10.32□□□□□ -0.76
USP28-209ENST00000540925 CLUHP3Q96NS8 147 aa10.32□□□□□ -0.76
USP28-209ENST00000540925 TMEM147Q9BVK8 224 aa10.32□□□□□ -0.76
USP28-209ENST00000540925 SCRT1Q9BWW7 348 aa10.32□□□□□ -0.76
USP28-209ENST00000540925 SLC25A39Q9BZJ4 359 aaPredicted RBP10.32□□□□□ -0.76
USP28-209ENST00000540925 LYRM2Q9NU23 88 aaPredicted RBP10.32□□□□□ -0.76
USP28-209ENST00000540925 MGAT4CQ9UBM8 478 aa10.32□□□□□ -0.76
USP28-209ENST00000540925 LSM5Q9Y4Y9 91 aaKnown RBP10.32□□□□□ -0.76
USP28-209ENST00000540925 PRAF2O60831 178 aa10.31□□□□□ -0.76
USP28-209ENST00000540925 MEOX2P50222 304 aa10.31□□□□□ -0.76
USP28-209ENST00000540925 DEFB1P60022 68 aa10.31□□□□□ -0.76
USP28-209ENST00000540925 SAMD13Q5VXD3 122 aa10.31□□□□□ -0.76
USP28-209ENST00000540925 GPR82Q96P67 336 aa10.31□□□□□ -0.76
USP28-209ENST00000540925 MGST2Q99735 147 aa10.31□□□□□ -0.76
USP28-209ENST00000540925 SAV1Q9H4B6 383 aaPredicted RBP10.31□□□□□ -0.76
USP28-209ENST00000540925 HIGD1AQ9Y241 93 aa10.31□□□□□ -0.76
USP28-209ENST00000540925 X6R8D5 127 aa10.31□□□□□ -0.76
USP28-209ENST00000540925 IGSF23A1L1A6 192 aa10.3□□□□□ -0.76
USP28-209ENST00000540925 FAM24AA6NFZ4 105 aa10.3□□□□□ -0.76
USP28-209ENST00000540925 A8MTW9 85 aa10.3□□□□□ -0.76
USP28-209ENST00000540925 INMT-MINDY4F8WBC2 141 aa10.3□□□□□ -0.76
USP28-209ENST00000540925 L7N2F9 121 aa10.3□□□□□ -0.76
USP28-209ENST00000540925 AGPAT2O15120 278 aa10.3□□□□□ -0.76
USP28-209ENST00000540925 MRPS12O15235 138 aaKnown RBP10.3□□□□□ -0.76
USP28-209ENST00000540925 HYPMO75409 117 aa10.3□□□□□ -0.76
USP28-209ENST00000540925 CST7O76096 145 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms