RNA–Protein interactions for RNA: ENST00000540738.3

COLCA1-204, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,537 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-204ENST00000540738 CFAP161Q6P656 301 aa11.51□□□□□ -0.57
COLCA1-204ENST00000540738 PRELID3AQ96N28 172 aa11.51□□□□□ -0.57
COLCA1-204ENST00000540738 MRPS16Q9Y3D3 137 aaKnown RBP11.51□□□□□ -0.57
COLCA1-204ENST00000540738 APOC4P55056 127 aa11.5□□□□□ -0.57
COLCA1-204ENST00000540738 DEFB112Q30KQ8 113 aa11.5□□□□□ -0.57
COLCA1-204ENST00000540738 IGKV1-16P04430 117 aa11.5□□□□□ -0.57
COLCA1-204ENST00000540738 FOSL1P15407 271 aa11.5□□□□□ -0.57
COLCA1-204ENST00000540738 WDR86Q86TI4 376 aa11.5□□□□□ -0.57
COLCA1-204ENST00000540738 TSSC4Q9Y5U2 329 aaPredicted RBP11.5□□□□□ -0.57
COLCA1-204ENST00000540738 C5orf52A6NGY3 159 aa11.5□□□□□ -0.57
COLCA1-204ENST00000540738 IFITM10A6NMD0 228 aa11.5□□□□□ -0.57
COLCA1-204ENST00000540738 PMS2P5A8MQ11 134 aa11.5□□□□□ -0.57
COLCA1-204ENST00000540738 CCL20P78556 96 aa11.5□□□□□ -0.57
COLCA1-204ENST00000540738 RCHY1Q96PM5 261 aa11.5□□□□□ -0.57
COLCA1-204ENST00000540738 RFNGQ9Y644 331 aa11.5□□□□□ -0.57
COLCA1-204ENST00000540738 ATP5G3P48201 142 aa11.5□□□□□ -0.57
COLCA1-204ENST00000540738 TMEM136Q6ZRR5 245 aa11.5□□□□□ -0.57
COLCA1-204ENST00000540738 H3BUA1 57 aa11.49□□□□□ -0.57
COLCA1-204ENST00000540738 NDPQ00604 133 aa11.49□□□□□ -0.57
COLCA1-204ENST00000540738 GGTLC1Q9BX51 225 aa11.49□□□□□ -0.57
COLCA1-204ENST00000540738 COL4A4P53420 1690 aaPredicted RBP11.49□□□□□ -0.57
COLCA1-204ENST00000540738 FNDC10F2Z333 226 aa11.49□□□□□ -0.57
COLCA1-204ENST00000540738 NDUFB8O95169 186 aa11.49□□□□□ -0.57
COLCA1-204ENST00000540738 ZNF138P52744 262 aa11.49□□□□□ -0.57
COLCA1-204ENST00000540738 OR10J3Q5JRS4 329 aa11.49□□□□□ -0.57
COLCA1-204ENST00000540738 TMEM183AQ8IXX5 376 aa11.49□□□□□ -0.57
COLCA1-204ENST00000540738 OR11H1Q8NG94 326 aa11.49□□□□□ -0.57
COLCA1-204ENST00000540738 OR4C5Q8NGB2 326 aa11.49□□□□□ -0.57
COLCA1-204ENST00000540738 PLXND1Q9Y4D7 1925 aa11.49□□□□□ -0.57
COLCA1-204ENST00000540738 TMEM238LA0A1B0GVL6 79 aa11.49□□□□□ -0.57
COLCA1-204ENST00000540738 A6NJY4 79 aa11.49□□□□□ -0.57
COLCA1-204ENST00000540738 FCN3O75636 299 aa11.49□□□□□ -0.57
COLCA1-204ENST00000540738 C17orf58Q2M2W7 97 aa11.49□□□□□ -0.57
COLCA1-204ENST00000540738 ST20Q9HBF5 79 aa11.49□□□□□ -0.57
COLCA1-204ENST00000540738 DOCK10Q96BY6 2186 aa11.49□□□□□ -0.57
COLCA1-204ENST00000540738 A0A087WX48 190 aa11.49□□□□□ -0.57
COLCA1-204ENST00000540738 F2Z2F3 143 aa11.49□□□□□ -0.57
COLCA1-204ENST00000540738 Q5BKY6 102 aa11.49□□□□□ -0.57
COLCA1-204ENST00000540738 MALP21145 153 aa11.48□□□□□ -0.57
COLCA1-204ENST00000540738 GNG5P63218 68 aa11.48□□□□□ -0.57
COLCA1-204ENST00000540738 SCRT1Q9BWW7 348 aa11.48□□□□□ -0.57
COLCA1-204ENST00000540738 ZMAT4Q9H898 229 aa11.48□□□□□ -0.57
COLCA1-204ENST00000540738 NRN1Q9NPD7 142 aa11.48□□□□□ -0.57
COLCA1-204ENST00000540738 RNASE2P10153 161 aaKnown RBP11.48□□□□□ -0.57
COLCA1-204ENST00000540738 SRIP30626 198 aa11.48□□□□□ -0.57
COLCA1-204ENST00000540738 LRRC75A-AS1Q8N1F1 130 aa11.48□□□□□ -0.57
COLCA1-204ENST00000540738 LYPD1Q8N2G4 141 aa11.48□□□□□ -0.57
COLCA1-204ENST00000540738 C22orf46C9J442 243 aa11.48□□□□□ -0.57
COLCA1-204ENST00000540738 HINT1P49773 126 aaPredicted RBP11.48□□□□□ -0.57
COLCA1-204ENST00000540738 RNF144BQ7Z419 303 aa11.48□□□□□ -0.57
COLCA1-204ENST00000540738 IL36BQ9NZH7 164 aa11.48□□□□□ -0.57
COLCA1-204ENST00000540738 DEFB131AP59861 70 aa11.48□□□□□ -0.57
COLCA1-204ENST00000540738 MST1LQ2TV78 715 aa11.48□□□□□ -0.57
COLCA1-204ENST00000540738 C8orf31Q8N9H6 132 aa11.48□□□□□ -0.57
COLCA1-204ENST00000540738 CADP27708 2225 aa11.47□□□□□ -0.57
COLCA1-204ENST00000540738 A0A1W2PPI3 338 aa11.47□□□□□ -0.57
COLCA1-204ENST00000540738 SRRM4A7MD48 611 aaKnown RBP11.47□□□□□ -0.57
COLCA1-204ENST00000540738 ZNF524Q96C55 264 aa11.47□□□□□ -0.57
COLCA1-204ENST00000540738 ATP5LO75964 103 aa11.47□□□□□ -0.57
COLCA1-204ENST00000540738 TMEM14EPQ6UXP3 125 aa11.47□□□□□ -0.57
COLCA1-204ENST00000540738 TMEM158Q8WZ71 300 aa11.47□□□□□ -0.57
COLCA1-204ENST00000540738 CHCHD5Q9BSY4 110 aa11.47□□□□□ -0.57
COLCA1-204ENST00000540738 ZNF256Q9Y2P7 627 aaPredicted RBP11.47□□□□□ -0.57
COLCA1-204ENST00000540738 TRGV1A0A0A0MS02 117 aa11.47□□□□□ -0.57
COLCA1-204ENST00000540738 NMUP48645 174 aa11.47□□□□□ -0.57
COLCA1-204ENST00000540738 TRAV9-1A0A075B6T8 112 aa11.47□□□□□ -0.57
COLCA1-204ENST00000540738 CFPP27918 469 aa11.47□□□□□ -0.57
COLCA1-204ENST00000540738 COTL1Q14019 142 aa11.47□□□□□ -0.57
COLCA1-204ENST00000540738 RAB37Q96AX2 223 aa11.47□□□□□ -0.57
COLCA1-204ENST00000540738 COX6CP09669 75 aa11.46□□□□□ -0.57
COLCA1-204ENST00000540738 YPEL3P61236 119 aaPredicted RBP11.46□□□□□ -0.57
COLCA1-204ENST00000540738 ORMDL3Q8N138 153 aa11.46□□□□□ -0.57
COLCA1-204ENST00000540738 RNF126Q9BV68 326 aa11.46□□□□□ -0.57
COLCA1-204ENST00000540738 MYLKQ15746 1914 aa11.46□□□□□ -0.57
COLCA1-204ENST00000540738 RNF222A6NCQ9 220 aa11.46□□□□□ -0.57
COLCA1-204ENST00000540738 G3V318 75 aa11.46□□□□□ -0.57
COLCA1-204ENST00000540738 HOXB4P17483 251 aaPredicted RBP11.46□□□□□ -0.57
COLCA1-204ENST00000540738 DUX4L9Q6RFH8 374 aaPredicted RBP11.46□□□□□ -0.57
COLCA1-204ENST00000540738 NPIPB5A8MRT5 1133 aa11.46□□□□□ -0.58
COLCA1-204ENST00000540738 NDUFA4O00483 81 aa11.46□□□□□ -0.58
COLCA1-204ENST00000540738 RPL36AP83881 106 aaKnown RBP11.46□□□□□ -0.58
COLCA1-204ENST00000540738 BIVMQ86UB2 503 aa11.46□□□□□ -0.58
COLCA1-204ENST00000540738 RPL36ALQ969Q0 106 aaKnown RBP11.46□□□□□ -0.58
COLCA1-204ENST00000540738 DIRC3C9JPN6 131 aa11.46□□□□□ -0.58
COLCA1-204ENST00000540738 IGHV4-59P01825 116 aa11.46□□□□□ -0.58
COLCA1-204ENST00000540738 WFDC12Q8WWY7 111 aa11.46□□□□□ -0.58
COLCA1-204ENST00000540738 FAM120AOSQ5T036 256 aa11.45□□□□□ -0.58
COLCA1-204ENST00000540738 ZNF843Q8N446 348 aa11.45□□□□□ -0.58
COLCA1-204ENST00000540738 TMEM50AO95807 157 aa11.45□□□□□ -0.58
COLCA1-204ENST00000540738 BTCP35070 178 aa11.45□□□□□ -0.58
COLCA1-204ENST00000540738 UBE2E2Q96LR5 201 aa11.45□□□□□ -0.58
COLCA1-204ENST00000540738 MRPL27Q9P0M9 148 aaKnown RBP11.45□□□□□ -0.58
COLCA1-204ENST00000540738 A6NDN8 102 aa11.45□□□□□ -0.58
COLCA1-204ENST00000540738 PPBPP02775 128 aa11.45□□□□□ -0.58
COLCA1-204ENST00000540738 C1QL4Q86Z23 238 aa11.45□□□□□ -0.58
COLCA1-204ENST00000540738 SCGB3A1Q96QR1 104 aa11.45□□□□□ -0.58
COLCA1-204ENST00000540738 IFI27P40305 119 aaPredicted RBP11.44□□□□□ -0.58
COLCA1-204ENST00000540738 STAG3L2P0CL84 134 aa11.44□□□□□ -0.58
COLCA1-204ENST00000540738 STAG3L3P0CL85 134 aa11.44□□□□□ -0.58
COLCA1-204ENST00000540738 PSG3Q16557 428 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms