RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 C16orf95Q9H693 158 aa9.37□□□□□ -0.91
CLIP1-208ENST00000537004 F11RQ9Y624 299 aaKnown RBP9.37□□□□□ -0.91
CLIP1-208ENST00000537004 IGKV1D-37A0A075B6S9 117 aa9.36□□□□□ -0.91
CLIP1-208ENST00000537004 TCRBV4S1A1TA0A5B7 111 aa9.36□□□□□ -0.91
CLIP1-208ENST00000537004 A6NDX4 124 aa9.36□□□□□ -0.91
CLIP1-208ENST00000537004 CORTO00230 105 aa9.36□□□□□ -0.91
CLIP1-208ENST00000537004 OR2C1O95371 312 aa9.36□□□□□ -0.91
CLIP1-208ENST00000537004 OR5G3P0C626 314 aa9.36□□□□□ -0.91
CLIP1-208ENST00000537004 ATP5G3P48201 142 aa9.36□□□□□ -0.91
CLIP1-208ENST00000537004 BLCAPP62952 87 aa9.36□□□□□ -0.91
CLIP1-208ENST00000537004 C11orf44Q8N8P7 122 aa9.36□□□□□ -0.91
CLIP1-208ENST00000537004 SLC25A33Q9BSK2 321 aa9.36□□□□□ -0.91
CLIP1-208ENST00000537004 PARLQ9H300 379 aa9.36□□□□□ -0.91
CLIP1-208ENST00000537004 NAT8Q9UHE5 227 aa9.36□□□□□ -0.91
CLIP1-208ENST00000537004 PSMB11A5LHX3 300 aa9.36□□□□□ -0.91
CLIP1-208ENST00000537004 PDE6DO43924 150 aa9.36□□□□□ -0.91
CLIP1-208ENST00000537004 HOXA5P20719 270 aa9.36□□□□□ -0.91
CLIP1-208ENST00000537004 ZNF90Q03938 601 aa9.36□□□□□ -0.91
CLIP1-208ENST00000537004 C5orf64Q2M2E5 130 aa9.36□□□□□ -0.91
CLIP1-208ENST00000537004 DNLZQ5SXM8 178 aa9.36□□□□□ -0.91
CLIP1-208ENST00000537004 OR51G1Q8NGK1 321 aa9.36□□□□□ -0.91
CLIP1-208ENST00000537004 TMEM37Q8WXS4 190 aa9.36□□□□□ -0.91
CLIP1-208ENST00000537004 SRSF8Q9BRL6 282 aaKnown RBP9.36□□□□□ -0.91
CLIP1-208ENST00000537004 TECRQ9NZ01 308 aaKnown RBP9.36□□□□□ -0.91
CLIP1-208ENST00000537004 SELENOTP62341 195 aa9.35□□□□□ -0.91
CLIP1-208ENST00000537004 KIAA0141Q14154 515 aaPredicted RBP9.35□□□□□ -0.91
CLIP1-208ENST00000537004 EBI3Q14213 229 aa9.35□□□□□ -0.91
CLIP1-208ENST00000537004 FXYD3Q14802 87 aa9.35□□□□□ -0.91
CLIP1-208ENST00000537004 TMEM241Q24JQ0 296 aa9.35□□□□□ -0.91
CLIP1-208ENST00000537004 FAM24BQ8N5W8 94 aa9.35□□□□□ -0.91
CLIP1-208ENST00000537004 Q8N6K4 173 aa9.35□□□□□ -0.91
CLIP1-208ENST00000537004 TMEM116Q8NCL8 245 aa9.35□□□□□ -0.91
CLIP1-208ENST00000537004 TXNDC17Q9BRA2 123 aa9.35□□□□□ -0.91
CLIP1-208ENST00000537004 YTHDF2Q9Y5A9 579 aaKnown RBP9.35□□□□□ -0.91
CLIP1-208ENST00000537004 F6UZH7 168 aa9.34□□□□□ -0.91
CLIP1-208ENST00000537004 NPPCP23582 126 aa9.34□□□□□ -0.91
CLIP1-208ENST00000537004 CDX1P47902 265 aaPredicted RBP9.34□□□□□ -0.91
CLIP1-208ENST00000537004 TMEM95Q3KNT9 176 aa9.34□□□□□ -0.91
CLIP1-208ENST00000537004 PRR31Q5SQ13 230 aa9.34□□□□□ -0.91
CLIP1-208ENST00000537004 MRPL32Q9BYC8 188 aaKnown RBP9.34□□□□□ -0.91
CLIP1-208ENST00000537004 NPFFR1Q9GZQ6 430 aa9.34□□□□□ -0.91
CLIP1-208ENST00000537004 ZNF702PQ9H963 129 aa9.34□□□□□ -0.91
CLIP1-208ENST00000537004 DNAJC4Q9NNZ3 241 aa9.34□□□□□ -0.91
CLIP1-208ENST00000537004 IGHV3-21A0A0B4J1V1 117 aa9.34□□□□□ -0.91
CLIP1-208ENST00000537004 SH2D7A6NKC9 451 aaPredicted RBP9.34□□□□□ -0.91
CLIP1-208ENST00000537004 NCBP2LA6PVI3 153 aaKnown RBP9.34□□□□□ -0.91
CLIP1-208ENST00000537004 TAS2R45P59539 299 aa9.34□□□□□ -0.91
CLIP1-208ENST00000537004 ADIRFQ15847 76 aa9.34□□□□□ -0.91
CLIP1-208ENST00000537004 C9orf152Q5JTZ5 239 aa9.34□□□□□ -0.91
CLIP1-208ENST00000537004 PQLC2Q6ZP29 291 aa9.34□□□□□ -0.91
CLIP1-208ENST00000537004 YPEL4Q96NS1 127 aa9.34□□□□□ -0.91
CLIP1-208ENST00000537004 RNF2Q99496 336 aa9.34□□□□□ -0.91
CLIP1-208ENST00000537004 WNT10AQ9GZT5 417 aa9.34□□□□□ -0.91
CLIP1-208ENST00000537004 DOK5Q9P104 306 aa9.34□□□□□ -0.91
CLIP1-208ENST00000537004 COX7A2P2O60397 106 aa9.33□□□□□ -0.92
CLIP1-208ENST00000537004 OR7C2O60412 319 aa9.33□□□□□ -0.92
CLIP1-208ENST00000537004 TMEM11P17152 192 aa9.33□□□□□ -0.92
CLIP1-208ENST00000537004 S100A2P29034 98 aa9.33□□□□□ -0.92
CLIP1-208ENST00000537004 ZNF124Q15973 351 aa9.33□□□□□ -0.92
CLIP1-208ENST00000537004 C10orf113Q5VZT2 155 aa9.33□□□□□ -0.92
CLIP1-208ENST00000537004 OR4X1Q8NH49 305 aa9.33□□□□□ -0.92
CLIP1-208ENST00000537004 ZNF503Q96F45 646 aa9.33□□□□□ -0.92
CLIP1-208ENST00000537004 TRGV9Q99603 122 aa9.33□□□□□ -0.92
CLIP1-208ENST00000537004 FAM103A1Q9BTL3 118 aaKnown RBP9.33□□□□□ -0.92
CLIP1-208ENST00000537004 PITPNC1Q9UKF7 332 aa9.33□□□□□ -0.92
CLIP1-208ENST00000537004 CXorf65A6NEN9 183 aa9.32□□□□□ -0.92
CLIP1-208ENST00000537004 I3L2K1 104 aa9.32□□□□□ -0.92
CLIP1-208ENST00000537004 NDUFB4O95168 129 aa9.32□□□□□ -0.92
CLIP1-208ENST00000537004 FAM106CPP0CH98 169 aa9.32□□□□□ -0.92
CLIP1-208ENST00000537004 C8orf88P0DMB2 117 aa9.32□□□□□ -0.92
CLIP1-208ENST00000537004 BTF3P20290 206 aaKnown RBP9.32□□□□□ -0.92
CLIP1-208ENST00000537004 RPL23P62829 140 aaKnown RBP9.32□□□□□ -0.92
CLIP1-208ENST00000537004 PYY3Q5JQD4 70 aa9.32□□□□□ -0.92
CLIP1-208ENST00000537004 MORN5Q5VZ52 161 aa9.32□□□□□ -0.92
CLIP1-208ENST00000537004 KLHDC1Q8N7A1 406 aa9.32□□□□□ -0.92
CLIP1-208ENST00000537004 OR1L4Q8NGR5 311 aa9.32□□□□□ -0.92
CLIP1-208ENST00000537004 TMEM167BQ9NRX6 74 aa9.32□□□□□ -0.92
CLIP1-208ENST00000537004 SERTAD4Q9NUC0 356 aa9.32□□□□□ -0.92
CLIP1-208ENST00000537004 GAR1Q9NY12 217 aaKnown RBP9.32□□□□□ -0.92
CLIP1-208ENST00000537004 BRS3P32247 399 aa9.32□□□□□ -0.92
CLIP1-208ENST00000537004 CX3CL1P78423 397 aa9.32□□□□□ -0.92
CLIP1-208ENST00000537004 PATE2Q6UY27 113 aa9.32□□□□□ -0.92
CLIP1-208ENST00000537004 ZNF562Q6V9R5 426 aa9.32□□□□□ -0.92
CLIP1-208ENST00000537004 C14orf144Q96I85 54 aa9.32□□□□□ -0.92
CLIP1-208ENST00000537004 DERL1Q9BUN8 251 aa9.32□□□□□ -0.92
CLIP1-208ENST00000537004 SLC25A2Q9BXI2 301 aa9.32□□□□□ -0.92
CLIP1-208ENST00000537004 TMEM242Q9NWH2 141 aa9.32□□□□□ -0.92
CLIP1-208ENST00000537004 ARL2-SNX15V9GYD0 113 aa9.32□□□□□ -0.92
CLIP1-208ENST00000537004 SCO2A0A1W2PP80 73 aa9.31□□□□□ -0.92
CLIP1-208ENST00000537004 OR10J4P0C629 311 aa9.31□□□□□ -0.92
CLIP1-208ENST00000537004 HIST1H1BP16401 226 aaKnown RBP9.31□□□□□ -0.92
CLIP1-208ENST00000537004 NDPQ00604 133 aa9.31□□□□□ -0.92
CLIP1-208ENST00000537004 ELOBQ15370 118 aa9.31□□□□□ -0.92
CLIP1-208ENST00000537004 LBHQ53QV2 105 aaPredicted RBP9.31□□□□□ -0.92
CLIP1-208ENST00000537004 ZNF343Q6P1L6 599 aa9.31□□□□□ -0.92
CLIP1-208ENST00000537004 ARPC1AQ92747 370 aa9.31□□□□□ -0.92
CLIP1-208ENST00000537004 FAM167A-AS1Q96KT0 104 aa9.31□□□□□ -0.92
CLIP1-208ENST00000537004 UHRF2Q96PU4 802 aa9.31□□□□□ -0.92
CLIP1-208ENST00000537004 ZNF355PQ9NSJ1 428 aa9.31□□□□□ -0.92
CLIP1-208ENST00000537004 URGCP-MRPS24S4R325 110 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms