RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, human

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF1-208	ENST00000532560	RAB5C	P51148	216 aa		11.27	□□□□□ -0.61
CPSF1-208	ENST00000532560	GAMT	Q14353	236 aa		11.27	□□□□□ -0.61
CPSF1-208	ENST00000532560	SPANXN5	Q5MJ07	72 aa		11.27	□□□□□ -0.61
CPSF1-208	ENST00000532560	C10orf91	Q5T1B1	145 aa		11.27	□□□□□ -0.61
CPSF1-208	ENST00000532560	BPIFC	Q8NFQ6	507 aa		11.27	□□□□□ -0.61
CPSF1-208	ENST00000532560	METTL26	Q96S19	204 aa		11.27	□□□□□ -0.61
CPSF1-208	ENST00000532560	RAB40C	Q96S21	281 aa		11.27	□□□□□ -0.61
CPSF1-208	ENST00000532560	RNF2	Q99496	336 aa		11.27	□□□□□ -0.61
CPSF1-208	ENST00000532560	ARV1	Q9H2C2	271 aa		11.27	□□□□□ -0.61
CPSF1-208	ENST00000532560	RCL1	Q9Y2P8	373 aa	Known RBP	11.27	□□□□□ -0.61
CPSF1-208	ENST00000532560	IGHV3-49	A0A0A0MS15	119 aa		11.26	□□□□□ -0.61
CPSF1-208	ENST00000532560	ZNF705E	A8MWA4	302 aa	Predicted RBP	11.26	□□□□□ -0.61
CPSF1-208	ENST00000532560		H3BP45	60 aa		11.26	□□□□□ -0.61
CPSF1-208	ENST00000532560	SCGB1D2	O95969	90 aa		11.26	□□□□□ -0.61
CPSF1-208	ENST00000532560	TOMM40	O96008	361 aa		11.26	□□□□□ -0.61
CPSF1-208	ENST00000532560	APOC3	P02656	99 aa		11.26	□□□□□ -0.61
CPSF1-208	ENST00000532560	CD5	P06127	495 aa		11.26	□□□□□ -0.61
CPSF1-208	ENST00000532560	NPPC	P23582	126 aa		11.26	□□□□□ -0.61
CPSF1-208	ENST00000532560	CRYBB3	P26998	211 aa		11.26	□□□□□ -0.61
CPSF1-208	ENST00000532560		Q8WTZ3	238 aa		11.26	□□□□□ -0.61
CPSF1-208	ENST00000532560	TMED6	Q8WW62	240 aa		11.26	□□□□□ -0.61
CPSF1-208	ENST00000532560	TMEM231	Q9H6L2	316 aa		11.26	□□□□□ -0.61
CPSF1-208	ENST00000532560	CARHSP1	Q9Y2V2	147 aa	Known RBP	11.26	□□□□□ -0.61
CPSF1-208	ENST00000532560	IGKV1D-37	A0A075B6S9	117 aa		11.25	□□□□□ -0.61
CPSF1-208	ENST00000532560	IGHV3OR16-13	A0A075B7E8	117 aa		11.25	□□□□□ -0.61
CPSF1-208	ENST00000532560	IGHV3-74	A0A0B4J1X5	117 aa		11.25	□□□□□ -0.61
CPSF1-208	ENST00000532560	MBP	P02686	304 aa	Predicted RBP	11.25	□□□□□ -0.61
CPSF1-208	ENST00000532560	SEC11B	P0C7V7	166 aa		11.25	□□□□□ -0.61
CPSF1-208	ENST00000532560	PVALB	P20472	110 aa	Predicted RBP	11.25	□□□□□ -0.61
CPSF1-208	ENST00000532560	TAS2R30	P59541	319 aa		11.25	□□□□□ -0.61
CPSF1-208	ENST00000532560	BTN1A1	Q13410	526 aa		11.25	□□□□□ -0.61
CPSF1-208	ENST00000532560	FAM90A2P	Q658T7	463 aa		11.25	□□□□□ -0.61
CPSF1-208	ENST00000532560	SBSPON	Q8IVN8	264 aa		11.25	□□□□□ -0.61
CPSF1-208	ENST00000532560	ASCL2	Q99929	193 aa		11.25	□□□□□ -0.61
CPSF1-208	ENST00000532560	SEC11C	Q9BY50	192 aa		11.25	□□□□□ -0.61
CPSF1-208	ENST00000532560	TUBA4B	Q9H853	241 aa		11.25	□□□□□ -0.61
CPSF1-208	ENST00000532560	PSENEN	Q9NZ42	101 aa		11.25	□□□□□ -0.61
CPSF1-208	ENST00000532560	DNAH9	Q9NYC9	4486 aa		11.25	□□□□□ -0.61
CPSF1-208	ENST00000532560	COL7A1	Q02388	2944 aa		11.24	□□□□□ -0.61
CPSF1-208	ENST00000532560		A0A1W2PS18	150 aa		11.24	□□□□□ -0.61
CPSF1-208	ENST00000532560	OR4C46	A6NHA9	309 aa		11.24	□□□□□ -0.61
CPSF1-208	ENST00000532560	ZFP92	A6NM28	416 aa		11.24	□□□□□ -0.61
CPSF1-208	ENST00000532560	OR11H12	B2RN74	326 aa		11.24	□□□□□ -0.61
CPSF1-208	ENST00000532560	APOH	P02749	345 aa	Predicted RBP	11.24	□□□□□ -0.61
CPSF1-208	ENST00000532560	IL4	P05112	153 aa		11.24	□□□□□ -0.61
CPSF1-208	ENST00000532560	RD3L	P0DJH9	198 aa		11.24	□□□□□ -0.61
CPSF1-208	ENST00000532560	CAV2	P51636	162 aa		11.24	□□□□□ -0.61
CPSF1-208	ENST00000532560	PAX9	P55771	341 aa		11.24	□□□□□ -0.61
CPSF1-208	ENST00000532560	DEFB125	Q8N687	156 aa		11.24	□□□□□ -0.61
CPSF1-208	ENST00000532560	THAP8	Q8NA92	274 aa		11.24	□□□□□ -0.61
CPSF1-208	ENST00000532560	NARS2	Q96I59	477 aa	Known RBP	11.24	□□□□□ -0.61
CPSF1-208	ENST00000532560	FAM110A	Q9BQ89	295 aa		11.24	□□□□□ -0.61
CPSF1-208	ENST00000532560	NKX6-2	Q9C056	277 aa	Predicted RBP	11.24	□□□□□ -0.61
CPSF1-208	ENST00000532560	WFDC10A	Q9H1F0	79 aa		11.24	□□□□□ -0.61
CPSF1-208	ENST00000532560	FBXL17	Q9UF56	701 aa		11.24	□□□□□ -0.61
CPSF1-208	ENST00000532560		U3KQE9	123 aa		11.24	□□□□□ -0.61
CPSF1-208	ENST00000532560	SNAPIN	O95295	136 aa		11.23	□□□□□ -0.61
CPSF1-208	ENST00000532560	FABP1	P07148	127 aa		11.23	□□□□□ -0.61
CPSF1-208	ENST00000532560	PSG1	P11464	419 aa		11.23	□□□□□ -0.61
CPSF1-208	ENST00000532560	RPL7L1	Q6DKI1	246 aa	Known RBP	11.23	□□□□□ -0.61
CPSF1-208	ENST00000532560	TMEM14EP	Q6UXP3	125 aa		11.23	□□□□□ -0.61
CPSF1-208	ENST00000532560	TCF24	Q7RTU0	167 aa		11.23	□□□□□ -0.61
CPSF1-208	ENST00000532560	OR51G1	Q8NGK1	321 aa		11.23	□□□□□ -0.61
CPSF1-208	ENST00000532560	LYPD6B	Q8NI32	183 aa		11.23	□□□□□ -0.61
CPSF1-208	ENST00000532560	TRGV9	Q99603	122 aa		11.23	□□□□□ -0.61
CPSF1-208	ENST00000532560	SLC25A31	Q9H0C2	315 aa		11.23	□□□□□ -0.61
CPSF1-208	ENST00000532560	SRD5A3	Q9H8P0	318 aa		11.23	□□□□□ -0.61
CPSF1-208	ENST00000532560	LSM5	Q9Y4Y9	91 aa	Known RBP	11.23	□□□□□ -0.61
CPSF1-208	ENST00000532560	IGKV1OR2-108	A0A075B7D4	117 aa		11.22	□□□□□ -0.61
CPSF1-208	ENST00000532560	IGHV3-66	A0A0C4DH42	116 aa		11.22	□□□□□ -0.61
CPSF1-208	ENST00000532560	PMS2P5	A8MQ11	134 aa		11.22	□□□□□ -0.61
CPSF1-208	ENST00000532560	USF2	Q15853	346 aa	Predicted RBP	11.22	□□□□□ -0.61
CPSF1-208	ENST00000532560	PXDC1	Q5TGL8	231 aa		11.22	□□□□□ -0.61
CPSF1-208	ENST00000532560	LINC00322	Q6ZN03	302 aa	Predicted RBP	11.22	□□□□□ -0.61
CPSF1-208	ENST00000532560	LILRB2	Q8N423	598 aa		11.22	□□□□□ -0.61
CPSF1-208	ENST00000532560	RNF125	Q96EQ8	232 aa		11.22	□□□□□ -0.61
CPSF1-208	ENST00000532560	GRAMD2B	Q96HH9	432 aa		11.22	□□□□□ -0.61
CPSF1-208	ENST00000532560	TRAV2	A0A0B4J234	112 aa		11.21	□□□□□ -0.61
CPSF1-208	ENST00000532560	DFFB	O76075	338 aa		11.21	□□□□□ -0.61
CPSF1-208	ENST00000532560	DLK1	P80370	383 aa		11.21	□□□□□ -0.61
CPSF1-208	ENST00000532560	ZNF90	Q03938	601 aa		11.21	□□□□□ -0.61
CPSF1-208	ENST00000532560	AKR1C1	Q04828	323 aa		11.21	□□□□□ -0.61
CPSF1-208	ENST00000532560	BAX	Q07812	192 aa		11.21	□□□□□ -0.61
CPSF1-208	ENST00000532560	ZNF266	Q14584	549 aa		11.21	□□□□□ -0.61
CPSF1-208	ENST00000532560	ODF3L2	Q3SX64	289 aa		11.21	□□□□□ -0.61
CPSF1-208	ENST00000532560	OR8G2P	Q6IF36	304 aa		11.21	□□□□□ -0.61
CPSF1-208	ENST00000532560	SREK1IP1	Q8N9Q2	155 aa	Predicted RBP	11.21	□□□□□ -0.61
CPSF1-208	ENST00000532560	TM2D3	Q9BRN9	247 aa		11.21	□□□□□ -0.61
CPSF1-208	ENST00000532560	SMDT1	Q9H4I9	107 aa		11.21	□□□□□ -0.61
CPSF1-208	ENST00000532560	C11orf1	Q9H5F2	150 aa		11.21	□□□□□ -0.61
CPSF1-208	ENST00000532560	UQCC1	Q9NVA1	299 aa		11.21	□□□□□ -0.61
CPSF1-208	ENST00000532560		U3KQK5	164 aa		11.21	□□□□□ -0.61
CPSF1-208	ENST00000532560	RBMY1B	A6NDE4	496 aa	Known RBP	11.2	□□□□□ -0.62
CPSF1-208	ENST00000532560	RBMY1E	A6NEQ0	496 aa	Known RBP	11.2	□□□□□ -0.62
CPSF1-208	ENST00000532560	FNDC10	F2Z333	226 aa		11.2	□□□□□ -0.62
CPSF1-208	ENST00000532560		F8W036	122 aa		11.2	□□□□□ -0.62
CPSF1-208	ENST00000532560	RBMY1D	P0C7P1	496 aa	Known RBP	11.2	□□□□□ -0.62
CPSF1-208	ENST00000532560	METTL15P1	P0C7V9	234 aa		11.2	□□□□□ -0.62
CPSF1-208	ENST00000532560	VAMP2	P63027	116 aa		11.2	□□□□□ -0.62
CPSF1-208	ENST00000532560	PAFAH1B2	P68402	229 aa		11.2	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 279.7 ms