RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 TMEM213A2RRL7 107 aa2.09□□□□□ -2.07
CD44-235ENST00000532339 COLCA2A8K830 154 aa2.09□□□□□ -2.07
CD44-235ENST00000532339 A8MWP6 167 aa2.09□□□□□ -2.07
CD44-235ENST00000532339 ZNF736B4DX44 427 aaPredicted RBP2.09□□□□□ -2.07
CD44-235ENST00000532339 M0R135 149 aa2.09□□□□□ -2.07
CD44-235ENST00000532339 NDUFS5O43920 106 aa2.09□□□□□ -2.07
CD44-235ENST00000532339 MRPS14O60783 128 aaKnown RBP2.09□□□□□ -2.07
CD44-235ENST00000532339 KLHL2O95198 593 aa2.09□□□□□ -2.07
CD44-235ENST00000532339 RANBP1P43487 201 aa2.09□□□□□ -2.07
CD44-235ENST00000532339 REG1BP48304 166 aa2.09□□□□□ -2.07
CD44-235ENST00000532339 GRB2P62993 217 aaKnown RBP2.09□□□□□ -2.07
CD44-235ENST00000532339 COX19Q49B96 90 aa2.09□□□□□ -2.07
CD44-235ENST00000532339 KLHL12Q53G59 568 aa2.09□□□□□ -2.07
CD44-235ENST00000532339 SYT6Q5T7P8 510 aaPredicted RBP2.09□□□□□ -2.07
CD44-235ENST00000532339 ZNF880Q6PDB4 577 aa2.09□□□□□ -2.07
CD44-235ENST00000532339 HAGHLQ6PII5 290 aaPredicted RBP2.09□□□□□ -2.07
CD44-235ENST00000532339 OR6V1Q8N148 313 aa2.09□□□□□ -2.07
CD44-235ENST00000532339 Q8N814 137 aa2.09□□□□□ -2.07
CD44-235ENST00000532339 OR10X1Q8NGY0 326 aa2.09□□□□□ -2.07
CD44-235ENST00000532339 AQP3Q92482 292 aa2.09□□□□□ -2.07
CD44-235ENST00000532339 USMG5Q96IX5 58 aa2.09□□□□□ -2.07
CD44-235ENST00000532339 CIB1Q99828 191 aa2.09□□□□□ -2.07
CD44-235ENST00000532339 SPIN2AQ99865 258 aa2.09□□□□□ -2.07
CD44-235ENST00000532339 SPIN2BQ9BPZ2 258 aa2.09□□□□□ -2.07
CD44-235ENST00000532339 OR51I2Q9H344 312 aa2.09□□□□□ -2.07
CD44-235ENST00000532339 CACYBPQ9HB71 228 aaKnown RBP2.09□□□□□ -2.07
CD44-235ENST00000532339 TREM1Q9NP99 234 aa2.09□□□□□ -2.07
CD44-235ENST00000532339 SLC2A9Q9NRM0 540 aa2.09□□□□□ -2.07
CD44-235ENST00000532339 CALML5Q9NZT1 146 aa2.09□□□□□ -2.07
CD44-235ENST00000532339 MARCOQ9UEW3 520 aaPredicted RBP2.09□□□□□ -2.07
CD44-235ENST00000532339 POLR1DQ9Y2S0 133 aa2.09□□□□□ -2.07
CD44-235ENST00000532339 PUS1Q9Y606 427 aaKnown RBP eCLIP2.09□□□□□ -2.07
CD44-235ENST00000532339 IGHV3OR16-8A0A075B7F1 116 aa2.08□□□□□ -2.08
CD44-235ENST00000532339 C7orf66A4D0T2 115 aa2.08□□□□□ -2.08
CD44-235ENST00000532339 TMEM189A5PLL7 270 aa2.08□□□□□ -2.08
CD44-235ENST00000532339 HSBP1L1C9JCN9 74 aa2.08□□□□□ -2.08
CD44-235ENST00000532339 CXCR6O00574 342 aa2.08□□□□□ -2.08
CD44-235ENST00000532339 NOS1APO75052 506 aaPredicted RBP2.08□□□□□ -2.08
CD44-235ENST00000532339 PIAS1O75925 651 aa2.08□□□□□ -2.08
CD44-235ENST00000532339 RBP1P09455 135 aa2.08□□□□□ -2.08
CD44-235ENST00000532339 NFYBP25208 207 aa2.08□□□□□ -2.08
CD44-235ENST00000532339 ERP29P30040 261 aaKnown RBP2.08□□□□□ -2.08
CD44-235ENST00000532339 TAS2R43P59537 309 aa2.08□□□□□ -2.08
CD44-235ENST00000532339 NCALDP61601 193 aa2.08□□□□□ -2.08
CD44-235ENST00000532339 GNG3P63215 75 aa2.08□□□□□ -2.08
CD44-235ENST00000532339 FAM3AP98173 230 aa2.08□□□□□ -2.08
CD44-235ENST00000532339 PRDX4Q13162 271 aa2.08□□□□□ -2.08
CD44-235ENST00000532339 MED21Q13503 144 aa2.08□□□□□ -2.08
CD44-235ENST00000532339 PMVKQ15126 192 aa2.08□□□□□ -2.08
CD44-235ENST00000532339 GRK1Q15835 563 aa2.08□□□□□ -2.08
CD44-235ENST00000532339 LUZP6Q538Z0 58 aa2.08□□□□□ -2.08
CD44-235ENST00000532339 FAM222AQ5U5X8 452 aa2.08□□□□□ -2.08
CD44-235ENST00000532339 DRAM2Q6UX65 266 aa2.08□□□□□ -2.08
CD44-235ENST00000532339 UNQ9165/PRO28630Q6UXU0 137 aa2.08□□□□□ -2.08
CD44-235ENST00000532339 CLECL1Q8IZS7 167 aa2.08□□□□□ -2.08
CD44-235ENST00000532339 LFNGQ8NES3 379 aa2.08□□□□□ -2.08
CD44-235ENST00000532339 TMEM239Q8WW34 195 aa2.08□□□□□ -2.08
CD44-235ENST00000532339 RTN4IP1Q8WWV3 396 aaPredicted RBP2.08□□□□□ -2.08
CD44-235ENST00000532339 SPTSSAQ969W0 71 aa2.08□□□□□ -2.08
CD44-235ENST00000532339 MRPL48Q96GC5 212 aaKnown RBP2.08□□□□□ -2.08
CD44-235ENST00000532339 COPS4Q9BT78 406 aa2.08□□□□□ -2.08
CD44-235ENST00000532339 SND1-IT1Q9HBX3 110 aa2.08□□□□□ -2.08
CD44-235ENST00000532339 ANXA10Q9UJ72 324 aa2.08□□□□□ -2.08
CD44-235ENST00000532339 LHFPL6Q9Y693 200 aa2.08□□□□□ -2.08
CD44-235ENST00000532339 ENPP4Q9Y6X5 453 aa2.08□□□□□ -2.08
CD44-235ENST00000532339 S4R3C0 116 aa2.08□□□□□ -2.08
CD44-235ENST00000532339 IGKV1-6A0A0C4DH72 117 aa2.07□□□□□ -2.08
CD44-235ENST00000532339 A8MT66 165 aa2.07□□□□□ -2.08
CD44-235ENST00000532339 KPNA4O00629 521 aaPredicted RBP2.07□□□□□ -2.08
CD44-235ENST00000532339 IGKV1-39P01597 117 aa2.07□□□□□ -2.08
CD44-235ENST00000532339 IGKV1D-39P04432 117 aa2.07□□□□□ -2.08
CD44-235ENST00000532339 TSPAN19P0C672 248 aa2.07□□□□□ -2.08
CD44-235ENST00000532339 C8orf88P0DMB2 117 aa2.07□□□□□ -2.08
CD44-235ENST00000532339 CFL1P23528 166 aaKnown RBP2.07□□□□□ -2.08
CD44-235ENST00000532339 PSMB2P49721 201 aa2.07□□□□□ -2.08
CD44-235ENST00000532339 UBE2KP61086 200 aa2.07□□□□□ -2.08
CD44-235ENST00000532339 VSNL1P62760 191 aa2.07□□□□□ -2.08
CD44-235ENST00000532339 RPL38P63173 70 aaKnown RBP2.07□□□□□ -2.08
CD44-235ENST00000532339 STX3Q13277 289 aa2.07□□□□□ -2.08
CD44-235ENST00000532339 IBA57Q5T440 356 aaKnown RBP2.07□□□□□ -2.08
CD44-235ENST00000532339 IDNKQ5T6J7 187 aa2.07□□□□□ -2.08
CD44-235ENST00000532339 LAMTOR1Q6IAA8 161 aa2.07□□□□□ -2.08
CD44-235ENST00000532339 TTC33Q6PID6 262 aaPredicted RBP2.07□□□□□ -2.08
CD44-235ENST00000532339 PRNTQ86SH4 94 aa2.07□□□□□ -2.08
CD44-235ENST00000532339 GPHB5Q86YW7 130 aa2.07□□□□□ -2.08
CD44-235ENST00000532339 SYCE1Q8N0S2 351 aa2.07□□□□□ -2.08
CD44-235ENST00000532339 SLC35G3Q8N808 338 aa2.07□□□□□ -2.08
CD44-235ENST00000532339 ZNF709Q8N972 641 aa2.07□□□□□ -2.08
CD44-235ENST00000532339 ATP6V1G3Q96LB4 118 aa2.07□□□□□ -2.08
CD44-235ENST00000532339 ZNF251Q9BRH9 671 aa2.07□□□□□ -2.08
CD44-235ENST00000532339 MARVELD1Q9BSK0 173 aa2.07□□□□□ -2.08
CD44-235ENST00000532339 FAM103A1Q9BTL3 118 aaKnown RBP2.07□□□□□ -2.08
CD44-235ENST00000532339 PBOV1Q9GZY1 135 aa2.07□□□□□ -2.08
CD44-235ENST00000532339 HES4Q9HCC6 221 aa2.07□□□□□ -2.08
CD44-235ENST00000532339 C12orf4Q9NQ89 552 aa2.07□□□□□ -2.08
CD44-235ENST00000532339 MRPL27Q9P0M9 148 aaKnown RBP2.07□□□□□ -2.08
CD44-235ENST00000532339 MRPS16Q9Y3D3 137 aaKnown RBP2.07□□□□□ -2.08
CD44-235ENST00000532339 MUC19Q7Z5P9 8384 aa2.07□□□□□ -2.08
CD44-235ENST00000532339 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP2.06□□□□□ -2.08
CD44-235ENST00000532339 FUOMA2VDF0 154 aa2.06□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms