RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 WDR12Q9GZL7 423 aaKnown RBP10.61□□□□□ -0.71
VPS28-215ENST00000531924 SAV1Q9H4B6 383 aaPredicted RBP10.61□□□□□ -0.71
VPS28-215ENST00000531924 GOLT1BQ9Y3E0 138 aa10.61□□□□□ -0.71
VPS28-215ENST00000531924 IGKV1D-37A0A075B6S9 117 aa10.6□□□□□ -0.71
VPS28-215ENST00000531924 ISLRO14498 428 aa10.6□□□□□ -0.71
VPS28-215ENST00000531924 AMBPP02760 352 aa10.6□□□□□ -0.71
VPS28-215ENST00000531924 S100A5P33763 92 aa10.6□□□□□ -0.71
VPS28-215ENST00000531924 GALR1P47211 349 aa10.6□□□□□ -0.71
VPS28-215ENST00000531924 GDF5OSQ5U4N7 250 aa10.6□□□□□ -0.71
VPS28-215ENST00000531924 C16orf92Q96LL3 132 aa10.6□□□□□ -0.71
VPS28-215ENST00000531924 TRGV9Q99603 122 aa10.6□□□□□ -0.71
VPS28-215ENST00000531924 SOSTQ9BQB4 213 aa10.6□□□□□ -0.71
VPS28-215ENST00000531924 SLC25A21Q9BQT8 299 aaPredicted RBP10.6□□□□□ -0.71
VPS28-215ENST00000531924 C7orf50Q9BRJ6 194 aaKnown RBP10.6□□□□□ -0.71
VPS28-215ENST00000531924 TMED3Q9Y3Q3 217 aa10.6□□□□□ -0.71
VPS28-215ENST00000531924 RFNGQ9Y644 331 aa10.6□□□□□ -0.71
VPS28-215ENST00000531924 CCDC160A6NGH7 325 aa10.59□□□□□ -0.71
VPS28-215ENST00000531924 WRBO00258 174 aa10.59□□□□□ -0.71
VPS28-215ENST00000531924 SLC25A6P12236 298 aa10.59□□□□□ -0.71
VPS28-215ENST00000531924 MEOX2P50222 304 aa10.59□□□□□ -0.71
VPS28-215ENST00000531924 DEFB1P60022 68 aa10.59□□□□□ -0.71
VPS28-215ENST00000531924 PSG9Q00887 426 aa10.59□□□□□ -0.71
VPS28-215ENST00000531924 ZNF705AQ6ZN79 300 aaPredicted RBP10.59□□□□□ -0.71
VPS28-215ENST00000531924 NEU1Q99519 415 aa10.59□□□□□ -0.71
VPS28-215ENST00000531924 MAGT1Q9H0U3 335 aa10.59□□□□□ -0.71
VPS28-215ENST00000531924 SLC25A22Q9H936 323 aa10.59□□□□□ -0.71
VPS28-215ENST00000531924 RPRMQ9NS64 109 aa10.59□□□□□ -0.71
VPS28-215ENST00000531924 TEX48A0A1B0GUV7 120 aa10.58□□□□□ -0.72
VPS28-215ENST00000531924 SYNGR2O43760 224 aa10.58□□□□□ -0.72
VPS28-215ENST00000531924 PITX3O75364 302 aa10.58□□□□□ -0.72
VPS28-215ENST00000531924 HOXB5P09067 269 aa10.58□□□□□ -0.72
VPS28-215ENST00000531924 AKR1C1Q04828 323 aa10.58□□□□□ -0.72
VPS28-215ENST00000531924 POM121L12Q8N7R1 296 aa10.58□□□□□ -0.72
VPS28-215ENST00000531924 BPIFCQ8NFQ6 507 aa10.58□□□□□ -0.72
VPS28-215ENST00000531924 TMEM208Q9BTX3 173 aa10.58□□□□□ -0.72
VPS28-215ENST00000531924 ZNF705FA8MVS1 300 aaPredicted RBP10.57□□□□□ -0.72
VPS28-215ENST00000531924 SFT2D2O95562 160 aa10.57□□□□□ -0.72
VPS28-215ENST00000531924 IFNA21P01568 189 aa10.57□□□□□ -0.72
VPS28-215ENST00000531924 HBE1P02100 147 aa10.57□□□□□ -0.72
VPS28-215ENST00000531924 ZNF705DP0CH99 300 aaPredicted RBP10.57□□□□□ -0.72
VPS28-215ENST00000531924 ZNF705BP0CI00 300 aaPredicted RBP10.57□□□□□ -0.72
VPS28-215ENST00000531924 ORM2P19652 201 aa10.57□□□□□ -0.72
VPS28-215ENST00000531924 INPP1P49441 399 aa10.57□□□□□ -0.72
VPS28-215ENST00000531924 SPANXN5Q5MJ07 72 aa10.57□□□□□ -0.72
VPS28-215ENST00000531924 FAM78BQ5VT40 261 aa10.57□□□□□ -0.72
VPS28-215ENST00000531924 UBE2DNLQ8IWF7 75 aa10.57□□□□□ -0.72
VPS28-215ENST00000531924 LRTM2Q8N967 370 aa10.57□□□□□ -0.72
VPS28-215ENST00000531924 THAP8Q8NA92 274 aa10.57□□□□□ -0.72
VPS28-215ENST00000531924 CLUHP3Q96NS8 147 aa10.57□□□□□ -0.72
VPS28-215ENST00000531924 RSG1Q9BU20 258 aa10.57□□□□□ -0.72
VPS28-215ENST00000531924 TMEM147Q9BVK8 224 aa10.57□□□□□ -0.72
VPS28-215ENST00000531924 SLC35B3Q9H1N7 401 aa10.57□□□□□ -0.72
VPS28-215ENST00000531924 DNAH6Q9C0G6 4158 aa10.57□□□□□ -0.72
VPS28-215ENST00000531924 F6UB75 175 aa10.56□□□□□ -0.72
VPS28-215ENST00000531924 SOCS3O14543 225 aa10.56□□□□□ -0.72
VPS28-215ENST00000531924 HTN3P15516 51 aa10.56□□□□□ -0.72
VPS28-215ENST00000531924 PPP1R1AQ13522 171 aa10.56□□□□□ -0.72
VPS28-215ENST00000531924 LINC00336Q6ZUF6 198 aa10.56□□□□□ -0.72
VPS28-215ENST00000531924 OR1B1Q8NGR6 318 aa10.56□□□□□ -0.72
VPS28-215ENST00000531924 DEDD2Q8WXF8 326 aa10.56□□□□□ -0.72
VPS28-215ENST00000531924 TRIM63Q969Q1 353 aa10.56□□□□□ -0.72
VPS28-215ENST00000531924 NIPSNAP3BQ9BS92 247 aa10.56□□□□□ -0.72
VPS28-215ENST00000531924 SLC45A2Q9UMX9 530 aa10.56□□□□□ -0.72
VPS28-215ENST00000531924 STRAPQ9Y3F4 350 aaKnown RBP10.56□□□□□ -0.72
VPS28-215ENST00000531924 IGKV1OR2-108A0A075B7D4 117 aa10.55□□□□□ -0.72
VPS28-215ENST00000531924 LOC102723971A0A1B0GUV8 181 aa10.55□□□□□ -0.72
VPS28-215ENST00000531924 SMCO3A2RU48 225 aa10.55□□□□□ -0.72
VPS28-215ENST00000531924 ZNF98A6NK75 572 aa10.55□□□□□ -0.72
VPS28-215ENST00000531924 PAX9P55771 341 aa10.55□□□□□ -0.72
VPS28-215ENST00000531924 ZNF79Q15937 498 aa10.55□□□□□ -0.72
VPS28-215ENST00000531924 RRN3P1Q2M238 152 aa10.55□□□□□ -0.72
VPS28-215ENST00000531924 FAM222AQ5U5X8 452 aa10.55□□□□□ -0.72
VPS28-215ENST00000531924 GSG1LQ6UXU4 331 aa10.55□□□□□ -0.72
VPS28-215ENST00000531924 ZNF709Q8N972 641 aa10.55□□□□□ -0.72
VPS28-215ENST00000531924 OR4D5Q8NGN0 318 aa10.55□□□□□ -0.72
VPS28-215ENST00000531924 GPR82Q96P67 336 aa10.55□□□□□ -0.72
VPS28-215ENST00000531924 SLC25A32Q9H2D1 315 aa10.55□□□□□ -0.72
VPS28-215ENST00000531924 DOK5Q9P104 306 aa10.55□□□□□ -0.72
VPS28-215ENST00000531924 A0A0J9YX75 114 aa10.54□□□□□ -0.72
VPS28-215ENST00000531924 H3BP45 60 aa10.54□□□□□ -0.72
VPS28-215ENST00000531924 M0R2N4 97 aa10.54□□□□□ -0.72
VPS28-215ENST00000531924 FGL1Q08830 312 aa10.54□□□□□ -0.72
VPS28-215ENST00000531924 SPANXN2Q5MJ10 180 aa10.54□□□□□ -0.72
VPS28-215ENST00000531924 FAM210BQ96KR6 192 aa10.54□□□□□ -0.72
VPS28-215ENST00000531924 SCRT1Q9BWW7 348 aa10.54□□□□□ -0.72
VPS28-215ENST00000531924 DKK2Q9UBU2 259 aa10.54□□□□□ -0.72
VPS28-215ENST00000531924 V9GYH0 126 aa10.54□□□□□ -0.72
VPS28-215ENST00000531924 HECTD4Q9Y4D8 3996 aa10.53□□□□□ -0.72
VPS28-215ENST00000531924 DUSP14O95147 198 aaKnown RBP10.53□□□□□ -0.72
VPS28-215ENST00000531924 IL5P05113 134 aa10.53□□□□□ -0.72
VPS28-215ENST00000531924 GATA2P23769 480 aaPredicted RBP10.53□□□□□ -0.72
VPS28-215ENST00000531924 UBE2MP61081 183 aaKnown RBP10.53□□□□□ -0.72
VPS28-215ENST00000531924 RAP2BP61225 183 aa10.53□□□□□ -0.72
VPS28-215ENST00000531924 ACOT7LQ6ZUV0 252 aa10.53□□□□□ -0.72
VPS28-215ENST00000531924 S100A7AQ86SG5 101 aa10.53□□□□□ -0.72
VPS28-215ENST00000531924 C20orf173Q96LM9 149 aa10.53□□□□□ -0.72
VPS28-215ENST00000531924 YTHDF2Q9Y5A9 579 aaKnown RBP10.53□□□□□ -0.72
VPS28-215ENST00000531924 DAD1P61803 113 aa10.52□□□□□ -0.73
VPS28-215ENST00000531924 TRIQKQ629K1 86 aa10.52□□□□□ -0.73
VPS28-215ENST00000531924 IGF2BP2-AS1Q96M15 143 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms