RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-231ENST00000531110 ZNF488Q96MN9 340 aa4.4□□□□□ -1.71
CD44-231ENST00000531110 KCNIP2Q9NS61 270 aa4.4□□□□□ -1.71
CD44-231ENST00000531110 WRAP73Q9P2S5 460 aaPredicted RBP4.4□□□□□ -1.71
CD44-231ENST00000531110 GNG13Q9P2W3 67 aa4.4□□□□□ -1.71
CD44-231ENST00000531110 GNG12Q9UBI6 72 aa4.4□□□□□ -1.71
CD44-231ENST00000531110 MED12LQ86YW9 2145 aa4.4□□□□□ -1.71
CD44-231ENST00000531110 CCL15-CCL14A0A0B4J2E2 113 aa4.39□□□□□ -1.71
CD44-231ENST00000531110 GRIFINA4D1Z8 144 aa4.39□□□□□ -1.71
CD44-231ENST00000531110 CRYM-AS1A6NIL9 109 aa4.39□□□□□ -1.71
CD44-231ENST00000531110 CEBPZOSA8MTT3 80 aa4.39□□□□□ -1.71
CD44-231ENST00000531110 J3QQQ9 107 aa4.39□□□□□ -1.71
CD44-231ENST00000531110 SDCBPO00560 298 aaPredicted RBP4.39□□□□□ -1.71
CD44-231ENST00000531110 HMGA1P17096 107 aaKnown RBP4.39□□□□□ -1.71
CD44-231ENST00000531110 CBLN1P23435 193 aa4.39□□□□□ -1.71
CD44-231ENST00000531110 RBM11P57052 281 aaKnown RBP4.39□□□□□ -1.71
CD44-231ENST00000531110 HILS1P60008 231 aa4.39□□□□□ -1.71
CD44-231ENST00000531110 MRPS36P82909 103 aaKnown RBP4.39□□□□□ -1.71
CD44-231ENST00000531110 SLC38A11Q08AI6 406 aa4.39□□□□□ -1.71
CD44-231ENST00000531110 ATP5L2Q7Z4Y8 100 aa4.39□□□□□ -1.71
CD44-231ENST00000531110 GTSCR1Q86UQ5 136 aa4.39□□□□□ -1.71
CD44-231ENST00000531110 ANKRD29Q8N6D5 301 aa4.39□□□□□ -1.71
CD44-231ENST00000531110 MDS2Q8NDY4 140 aa4.39□□□□□ -1.71
CD44-231ENST00000531110 DNAJA3Q96EY1 480 aa4.39□□□□□ -1.71
CD44-231ENST00000531110 TMEM147Q9BVK8 224 aa4.39□□□□□ -1.71
CD44-231ENST00000531110 RTL8AQ9BWD3 113 aa4.39□□□□□ -1.71
CD44-231ENST00000531110 FZR1Q9UM11 496 aa4.39□□□□□ -1.71
CD44-231ENST00000531110 RCL1Q9Y2P8 373 aaKnown RBP4.39□□□□□ -1.71
CD44-231ENST00000531110 OARD1Q9Y530 152 aa4.39□□□□□ -1.71
CD44-231ENST00000531110 KCNE3Q9Y6H6 103 aa4.39□□□□□ -1.71
CD44-231ENST00000531110 ZNF236Q9UL36 1845 aa4.39□□□□□ -1.71
CD44-231ENST00000531110 FANCMQ8IYD8 2048 aa4.38□□□□□ -1.71
CD44-231ENST00000531110 LOC107984640A0A0U1RRK4 108 aa4.38□□□□□ -1.71
CD44-231ENST00000531110 CTXND1A0A1B0GTU2 59 aa4.38□□□□□ -1.71
CD44-231ENST00000531110 MED19A0JLT2 244 aaPredicted RBP4.38□□□□□ -1.71
CD44-231ENST00000531110 SNURFLB1AK76 121 aa4.38□□□□□ -1.71
CD44-231ENST00000531110 H3BTX0 84 aa4.38□□□□□ -1.71
CD44-231ENST00000531110 TNFSF12O43508 249 aa4.38□□□□□ -1.71
CD44-231ENST00000531110 PDCD6O75340 191 aa4.38□□□□□ -1.71
CD44-231ENST00000531110 TRACP01848 142 aa4.38□□□□□ -1.71
CD44-231ENST00000531110 RBP4P02753 201 aa4.38□□□□□ -1.71
CD44-231ENST00000531110 IGHV4-38-2P0DP08 117 aa4.38□□□□□ -1.71
CD44-231ENST00000531110 COL8A2P25067 703 aa4.38□□□□□ -1.71
CD44-231ENST00000531110 SRSF9Q13242 221 aaKnown RBP eCLIP4.38□□□□□ -1.71
CD44-231ENST00000531110 C1orf61Q13536 156 aa4.38□□□□□ -1.71
CD44-231ENST00000531110 TMEM187Q14656 261 aa4.38□□□□□ -1.71
CD44-231ENST00000531110 LGALS9BQ3B8N2 356 aa4.38□□□□□ -1.71
CD44-231ENST00000531110 WDR38Q5JTN6 314 aa4.38□□□□□ -1.71
CD44-231ENST00000531110 FAM78AQ5JUQ0 283 aa4.38□□□□□ -1.71
CD44-231ENST00000531110 LGALS9CQ6DKI2 356 aa4.38□□□□□ -1.71
CD44-231ENST00000531110 ZDHHC19Q8WVZ1 309 aaPredicted RBP4.38□□□□□ -1.71
CD44-231ENST00000531110 CLDN23Q96B33 292 aa4.38□□□□□ -1.71
CD44-231ENST00000531110 ZNF524Q96C55 264 aa4.38□□□□□ -1.71
CD44-231ENST00000531110 ZNF501Q96CX3 271 aaPredicted RBP4.38□□□□□ -1.71
CD44-231ENST00000531110 TIMD4Q96H15 378 aa4.38□□□□□ -1.71
CD44-231ENST00000531110 LINC00477Q96M19 166 aa4.38□□□□□ -1.71
CD44-231ENST00000531110 FAM103A1Q9BTL3 118 aaKnown RBP4.38□□□□□ -1.71
CD44-231ENST00000531110 SLC25A2Q9BXI2 301 aa4.38□□□□□ -1.71
CD44-231ENST00000531110 PLA2G12AQ9BZM1 189 aa4.38□□□□□ -1.71
CD44-231ENST00000531110 OSTCQ9NRP0 149 aa4.38□□□□□ -1.71
CD44-231ENST00000531110 TNFRSF19Q9NS68 423 aa4.38□□□□□ -1.71
CD44-231ENST00000531110 KLK13Q9UKR3 277 aa4.38□□□□□ -1.71
CD44-231ENST00000531110 UBR3Q6ZT12 1888 aa4.38□□□□□ -1.71
CD44-231ENST00000531110 GREB1LQ9C091 1923 aaPredicted RBP4.38□□□□□ -1.71
CD44-231ENST00000531110 NUP210Q8TEM1 1887 aaPredicted RBP4.37□□□□□ -1.71
CD44-231ENST00000531110 IGLV3-22A0A075B6J6 115 aa4.37□□□□□ -1.71
CD44-231ENST00000531110 TRAV12-2A0A075B6T6 113 aa4.37□□□□□ -1.71
CD44-231ENST00000531110 FAM24AA6NFZ4 105 aa4.37□□□□□ -1.71
CD44-231ENST00000531110 PMS2P5A8MQ11 134 aa4.37□□□□□ -1.71
CD44-231ENST00000531110 C2CD4DB7Z1M9 353 aa4.37□□□□□ -1.71
CD44-231ENST00000531110 LMO7DNF2Z398 122 aa4.37□□□□□ -1.71
CD44-231ENST00000531110 CST7O76096 145 aa4.37□□□□□ -1.71
CD44-231ENST00000531110 NDUFB2O95178 105 aa4.37□□□□□ -1.71
CD44-231ENST00000531110 SCGB1C2P0DMR2 95 aa4.37□□□□□ -1.71
CD44-231ENST00000531110 FOXA3P55318 350 aaPredicted RBP4.37□□□□□ -1.71
CD44-231ENST00000531110 RPL30P62888 115 aaKnown RBP4.37□□□□□ -1.71
CD44-231ENST00000531110 Q6ZRU5 148 aa4.37□□□□□ -1.71
CD44-231ENST00000531110 AAED1Q7RTV5 226 aa4.37□□□□□ -1.71
CD44-231ENST00000531110 SH2D6Q7Z4S9 175 aa4.37□□□□□ -1.71
CD44-231ENST00000531110 CEND1Q8N111 149 aa4.37□□□□□ -1.71
CD44-231ENST00000531110 OR5AS1Q8N127 324 aa4.37□□□□□ -1.71
CD44-231ENST00000531110 RYBPQ8N488 228 aaPredicted RBP4.37□□□□□ -1.71
CD44-231ENST00000531110 TMEM252Q8N6L7 170 aa4.37□□□□□ -1.71
CD44-231ENST00000531110 LINC01555Q8NAE3 123 aa4.37□□□□□ -1.71
CD44-231ENST00000531110 ZPLD1Q8TCW7 415 aa4.37□□□□□ -1.71
CD44-231ENST00000531110 TMEM158Q8WZ71 300 aa4.37□□□□□ -1.71
CD44-231ENST00000531110 C18orf12Q96KH6 178 aa4.37□□□□□ -1.71
CD44-231ENST00000531110 PELI2Q9HAT8 420 aa4.37□□□□□ -1.71
CD44-231ENST00000531110 PILRAQ9UKJ1 303 aa4.37□□□□□ -1.71
CD44-231ENST00000531110 PYGO1Q9Y3Y4 419 aa4.37□□□□□ -1.71
CD44-231ENST00000531110 COL4A4P53420 1690 aaPredicted RBP4.37□□□□□ -1.71
CD44-231ENST00000531110 OBSL1O75147 1896 aa4.37□□□□□ -1.71
CD44-231ENST00000531110 ZFP92A6NM28 416 aa4.36□□□□□ -1.71
CD44-231ENST00000531110 A8MWV9 139 aa4.36□□□□□ -1.71
CD44-231ENST00000531110 SMIM1B2RUZ4 78 aa4.36□□□□□ -1.71
CD44-231ENST00000531110 ATOX1O00244 68 aa4.36□□□□□ -1.71
CD44-231ENST00000531110 LEPROTL1O95214 131 aa4.36□□□□□ -1.71
CD44-231ENST00000531110 P04436 131 aa4.36□□□□□ -1.71
CD44-231ENST00000531110 PYYP10082 97 aa4.36□□□□□ -1.71
CD44-231ENST00000531110 LIFP15018 202 aa4.36□□□□□ -1.71
CD44-231ENST00000531110 PFN2P35080 140 aa4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms