RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 IGHG4P01861 327 aa16.46■□□□□ 0.23
VPS28-212ENST00000530836 SFTA3P0C7M3 94 aa16.46■□□□□ 0.23
VPS28-212ENST00000530836 GCHFRP30047 84 aa16.46■□□□□ 0.23
VPS28-212ENST00000530836 S100A7P31151 101 aa16.46■□□□□ 0.23
VPS28-212ENST00000530836 SLC35B1P78383 322 aa16.46■□□□□ 0.23
VPS28-212ENST00000530836 ICAM4Q14773 271 aa16.46■□□□□ 0.23
VPS28-212ENST00000530836 FAM209BQ5JX69 171 aa16.46■□□□□ 0.23
VPS28-212ENST00000530836 TMPRSS5Q9H3S3 457 aa16.46■□□□□ 0.23
VPS28-212ENST00000530836 RNF24Q9Y225 148 aa16.46■□□□□ 0.23
VPS28-212ENST00000530836 ARL2-SNX15V9GYD0 113 aa16.46■□□□□ 0.23
VPS28-212ENST00000530836 WI2-2373I1.2A0A1W2PRP0 233 aa16.45■□□□□ 0.22
VPS28-212ENST00000530836 EIF3GO75821 320 aaKnown RBP eCLIP16.45■□□□□ 0.22
VPS28-212ENST00000530836 CLEC3BP05452 202 aa16.45■□□□□ 0.22
VPS28-212ENST00000530836 LYZP61626 148 aa16.45■□□□□ 0.22
VPS28-212ENST00000530836 RNF125Q96EQ8 232 aa16.45■□□□□ 0.22
VPS28-212ENST00000530836 MDFIQ99750 246 aa16.45■□□□□ 0.22
VPS28-212ENST00000530836 MRPL27Q9P0M9 148 aaKnown RBP16.45■□□□□ 0.22
VPS28-212ENST00000530836 F8W036 122 aa16.45■□□□□ 0.22
VPS28-212ENST00000530836 IGHV3-23P01764 117 aa16.45■□□□□ 0.22
VPS28-212ENST00000530836 PF4V1P10720 104 aa16.45■□□□□ 0.22
VPS28-212ENST00000530836 DEFA5Q01523 94 aa16.45■□□□□ 0.22
VPS28-212ENST00000530836 C10orf91Q5T1B1 145 aa16.45■□□□□ 0.22
VPS28-212ENST00000530836 ZNF600Q6ZNG1 722 aa16.45■□□□□ 0.22
VPS28-212ENST00000530836 ZNF491Q8N8L2 437 aa16.45■□□□□ 0.22
VPS28-212ENST00000530836 SUN5Q8TC36 379 aa16.45■□□□□ 0.22
VPS28-212ENST00000530836 RXFP4Q8TDU9 374 aa16.45■□□□□ 0.22
VPS28-212ENST00000530836 CCDC140Q96MF4 163 aa16.45■□□□□ 0.22
VPS28-212ENST00000530836 OR7C2O60412 319 aa16.44■□□□□ 0.22
VPS28-212ENST00000530836 IL4P05112 153 aa16.44■□□□□ 0.22
VPS28-212ENST00000530836 GPR183P32249 361 aa16.44■□□□□ 0.22
VPS28-212ENST00000530836 MEF2BQ02080 365 aaPredicted RBP16.44■□□□□ 0.22
VPS28-212ENST00000530836 C9JQL5 133 aa16.43■□□□□ 0.22
VPS28-212ENST00000530836 NDUFA7O95182 113 aa16.43■□□□□ 0.22
VPS28-212ENST00000530836 RAB9AP51151 201 aa16.43■□□□□ 0.22
VPS28-212ENST00000530836 RELQ04864 619 aaPredicted RBP16.43■□□□□ 0.22
VPS28-212ENST00000530836 FAM167A-AS1Q96KT0 104 aa16.43■□□□□ 0.22
VPS28-212ENST00000530836 SLC25A2Q9BXI2 301 aa16.43■□□□□ 0.22
VPS28-212ENST00000530836 CARHSP1Q9Y2V2 147 aaKnown RBP16.43■□□□□ 0.22
VPS28-212ENST00000530836 TGOLN2O43493 480 aa16.42■□□□□ 0.22
VPS28-212ENST00000530836 SRP19P09132 144 aaKnown RBP16.42■□□□□ 0.22
VPS28-212ENST00000530836 PSMB8P28062 276 aa16.42■□□□□ 0.22
VPS28-212ENST00000530836 ADMP35318 185 aa16.42■□□□□ 0.22
VPS28-212ENST00000530836 TEX38Q6PEX7 206 aa16.42■□□□□ 0.22
VPS28-212ENST00000530836 CLEC19AQ6UXS0 136 aa16.42■□□□□ 0.22
VPS28-212ENST00000530836 Q6ZSV7 163 aa16.42■□□□□ 0.22
VPS28-212ENST00000530836 OR5AU1Q8NGC0 362 aa16.42■□□□□ 0.22
VPS28-212ENST00000530836 UHRF2Q96PU4 802 aa16.42■□□□□ 0.22
VPS28-212ENST00000530836 CHRDL1Q9BU40 450 aa16.42■□□□□ 0.22
VPS28-212ENST00000530836 PAGE4O60829 102 aa16.41■□□□□ 0.22
VPS28-212ENST00000530836 SLC25A39Q9BZJ4 359 aaPredicted RBP16.41■□□□□ 0.22
VPS28-212ENST00000530836 TMEM250H0YL14 139 aa16.41■□□□□ 0.22
VPS28-212ENST00000530836 ELANEP08246 267 aa16.41■□□□□ 0.22
VPS28-212ENST00000530836 FOXL1Q12952 345 aa16.41■□□□□ 0.22
VPS28-212ENST00000530836 FOXE3Q13461 319 aa16.41■□□□□ 0.22
VPS28-212ENST00000530836 TMEM95Q3KNT9 176 aa16.41■□□□□ 0.22
VPS28-212ENST00000530836 OR4F5Q8NH21 305 aa16.41■□□□□ 0.22
VPS28-212ENST00000530836 PAXXQ9BUH6 204 aa16.41■□□□□ 0.22
VPS28-212ENST00000530836 OR51M1Q9H341 326 aa16.41■□□□□ 0.22
VPS28-212ENST00000530836 PUS1Q9Y606 427 aaKnown RBP eCLIP16.41■□□□□ 0.22
VPS28-212ENST00000530836 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP16.4■□□□□ 0.22
VPS28-212ENST00000530836 BMPR1BO00238 502 aa16.4■□□□□ 0.22
VPS28-212ENST00000530836 PDE6DO43924 150 aa16.4■□□□□ 0.22
VPS28-212ENST00000530836 APOC3P02656 99 aa16.4■□□□□ 0.22
VPS28-212ENST00000530836 SOHLH1Q5JUK2 328 aa16.4■□□□□ 0.22
VPS28-212ENST00000530836 MORN5Q5VZ52 161 aa16.4■□□□□ 0.22
VPS28-212ENST00000530836 ZNF503Q96F45 646 aa16.4■□□□□ 0.22
VPS28-212ENST00000530836 SHANK2-AS3Q9BTD1 123 aa16.4■□□□□ 0.22
VPS28-212ENST00000530836 KLK15Q9H2R5 256 aa16.4■□□□□ 0.22
VPS28-212ENST00000530836 C16orf95Q9H693 158 aa16.4■□□□□ 0.22
VPS28-212ENST00000530836 C11orf94C9JXX5 98 aa16.39■□□□□ 0.21
VPS28-212ENST00000530836 ADCYAP1P18509 176 aa16.39■□□□□ 0.21
VPS28-212ENST00000530836 ZNF343Q6P1L6 599 aa16.39■□□□□ 0.21
VPS28-212ENST00000530836 SVBPQ8N300 66 aa16.39■□□□□ 0.21
VPS28-212ENST00000530836 TRAV5A0A0B4J249 113 aa16.38■□□□□ 0.21
VPS28-212ENST00000530836 H3BRN7 92 aa16.38■□□□□ 0.21
VPS28-212ENST00000530836 CD81P60033 236 aa16.38■□□□□ 0.21
VPS28-212ENST00000530836 UBE2L3P68036 154 aaKnown RBP16.38■□□□□ 0.21
VPS28-212ENST00000530836 NKX6-2Q9C056 277 aaPredicted RBP16.38■□□□□ 0.21
VPS28-212ENST00000530836 GNB4Q9HAV0 340 aa16.38■□□□□ 0.21
VPS28-212ENST00000530836 TMEM14CQ9P0S9 112 aa16.38■□□□□ 0.21
VPS28-212ENST00000530836 A0A1W2PRE2 83 aa16.37■□□□□ 0.21
VPS28-212ENST00000530836 ARL3P36405 182 aa16.37■□□□□ 0.21
VPS28-212ENST00000530836 USF2Q15853 346 aaPredicted RBP16.37■□□□□ 0.21
VPS28-212ENST00000530836 CST9LP1Q5W188 147 aa16.37■□□□□ 0.21
VPS28-212ENST00000530836 ZNF329Q86UD4 541 aa16.37■□□□□ 0.21
VPS28-212ENST00000530836 LINC01006Q8NI28 216 aa16.37■□□□□ 0.21
VPS28-212ENST00000530836 RABAC1Q9UI14 185 aa16.37■□□□□ 0.21
VPS28-212ENST00000530836 A0A1B0GUS0 222 aa16.37■□□□□ 0.21
VPS28-212ENST00000530836 FAM74A7A6NL05 159 aa16.37■□□□□ 0.21
VPS28-212ENST00000530836 F6UZH7 168 aa16.37■□□□□ 0.21
VPS28-212ENST00000530836 RNF152Q8N8N0 203 aa16.37■□□□□ 0.21
VPS28-212ENST00000530836 CYB561D1Q8N8Q1 229 aa16.37■□□□□ 0.21
VPS28-212ENST00000530836 OR4F4Q96R69 305 aa16.37■□□□□ 0.21
VPS28-212ENST00000530836 CLPSL1A2RUU4 121 aa16.36■□□□□ 0.21
VPS28-212ENST00000530836 OR10J4P0C629 311 aa16.36■□□□□ 0.21
VPS28-212ENST00000530836 UBE2G2P60604 165 aa16.36■□□□□ 0.21
VPS28-212ENST00000530836 AWAT1Q58HT5 328 aa16.36■□□□□ 0.21
VPS28-212ENST00000530836 TOMM20LQ6UXN7 152 aa16.36■□□□□ 0.21
VPS28-212ENST00000530836 BPIFA4PQ86YQ2 179 aa16.36■□□□□ 0.21
VPS28-212ENST00000530836 CCDC28AQ8IWP9 274 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms