RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 MLXQ9UH92 298 aa16.17■□□□□ 0.18
VPS28-209ENST00000528142 SVEP1Q4LDE5 3571 aa16.17■□□□□ 0.18
VPS28-209ENST00000528142 IL4P05112 153 aa16.17■□□□□ 0.18
VPS28-209ENST00000528142 CTSGP08311 255 aa16.17■□□□□ 0.18
VPS28-209ENST00000528142 NBEAP1P0C6P0 100 aa16.17■□□□□ 0.18
VPS28-209ENST00000528142 RHOGP84095 191 aa16.17■□□□□ 0.18
VPS28-209ENST00000528142 LY96Q9Y6Y9 160 aa16.17■□□□□ 0.18
VPS28-209ENST00000528142 TGIF2-C20orf24A0A0A6YYL0 155 aa16.16■□□□□ 0.18
VPS28-209ENST00000528142 H3BRN7 92 aa16.16■□□□□ 0.18
VPS28-209ENST00000528142 C15orf32Q32M92 178 aa16.16■□□□□ 0.18
VPS28-209ENST00000528142 ZNF502Q8TBZ5 544 aa16.16■□□□□ 0.18
VPS28-209ENST00000528142 HELTA6NFD8 242 aa16.15■□□□□ 0.18
VPS28-209ENST00000528142 OR2T8A6NH00 312 aa16.15■□□□□ 0.18
VPS28-209ENST00000528142 SNRPCP09234 159 aaKnown RBP16.15■□□□□ 0.18
VPS28-209ENST00000528142 CD99P14209 185 aa16.15■□□□□ 0.18
VPS28-209ENST00000528142 FLI1Q01543 452 aaPredicted RBP16.15■□□□□ 0.18
VPS28-209ENST00000528142 PRSS57Q6UWY2 283 aa16.15■□□□□ 0.18
VPS28-209ENST00000528142 TRAV41A0A0B4J266 112 aa16.15■□□□□ 0.18
VPS28-209ENST00000528142 H7BYZ3 331 aa16.15■□□□□ 0.18
VPS28-209ENST00000528142 PFN1P07737 140 aaKnown RBP16.15■□□□□ 0.18
VPS28-209ENST00000528142 ADMP35318 185 aa16.15■□□□□ 0.18
VPS28-209ENST00000528142 USF2Q15853 346 aaPredicted RBP16.15■□□□□ 0.18
VPS28-209ENST00000528142 ZNF600Q6ZNG1 722 aa16.15■□□□□ 0.18
VPS28-209ENST00000528142 NECAP1Q8NC96 275 aa16.15■□□□□ 0.18
VPS28-209ENST00000528142 CR1P17927 2039 aa16.14■□□□□ 0.17
VPS28-209ENST00000528142 MDFIC2A0A1B0GVS7 189 aa16.14■□□□□ 0.17
VPS28-209ENST00000528142 M0QZK8 103 aa16.14■□□□□ 0.17
VPS28-209ENST00000528142 IGF1P05019 195 aa16.14■□□□□ 0.17
VPS28-209ENST00000528142 BLNKQ8WV28 456 aa16.14■□□□□ 0.17
VPS28-209ENST00000528142 ZNF414Q96IQ9 312 aa16.14■□□□□ 0.17
VPS28-209ENST00000528142 CHRDL1Q9BU40 450 aa16.14■□□□□ 0.17
VPS28-209ENST00000528142 PITPNC1Q9UKF7 332 aa16.14■□□□□ 0.17
VPS28-209ENST00000528142 CELSR1Q9NYQ6 3014 aa16.14■□□□□ 0.17
VPS28-209ENST00000528142 PRRC2AP48634 2157 aaKnown RBP16.14■□□□□ 0.17
VPS28-209ENST00000528142 K7EN84 100 aa16.13■□□□□ 0.17
VPS28-209ENST00000528142 FSHBP01225 129 aa16.13■□□□□ 0.17
VPS28-209ENST00000528142 IGHG2P01859 326 aa16.13■□□□□ 0.17
VPS28-209ENST00000528142 RANP62826 216 aaKnown RBP16.13■□□□□ 0.17
VPS28-209ENST00000528142 BCL6BQ8N143 479 aaPredicted RBP16.13■□□□□ 0.17
VPS28-209ENST00000528142 Q96MF0 132 aa16.13■□□□□ 0.17
VPS28-209ENST00000528142 TCEAL7Q9BRU2 100 aa16.13■□□□□ 0.17
VPS28-209ENST00000528142 ZANQ9Y493 2812 aa16.13■□□□□ 0.17
VPS28-209ENST00000528142 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP16.13■□□□□ 0.173e-7■■■■□ 19.9
VPS28-209ENST00000528142 SCGB2A1O75556 95 aa16.12■□□□□ 0.17
VPS28-209ENST00000528142 DEFB112Q30KQ8 113 aa16.12■□□□□ 0.17
VPS28-209ENST00000528142 CENPWQ5EE01 88 aa16.12■□□□□ 0.17
VPS28-209ENST00000528142 TRBV24-1A0A075B6N3 115 aa16.12■□□□□ 0.17
VPS28-209ENST00000528142 C1orf196B1AJZ1 125 aa16.12■□□□□ 0.17
VPS28-209ENST00000528142 HIST1H1EP10412 219 aaKnown RBP16.12■□□□□ 0.17
VPS28-209ENST00000528142 SFRP2Q96HF1 295 aa16.12■□□□□ 0.17
VPS28-209ENST00000528142 ZNF586Q9NXT0 402 aa16.12■□□□□ 0.17
VPS28-209ENST00000528142 GALR1P47211 349 aa16.11■□□□□ 0.17
VPS28-209ENST00000528142 GNG4P50150 75 aa16.11■□□□□ 0.17
VPS28-209ENST00000528142 C9orf152Q5JTZ5 239 aa16.11■□□□□ 0.17
VPS28-209ENST00000528142 C1QL4Q86Z23 238 aa16.11■□□□□ 0.17
VPS28-209ENST00000528142 ZFP82Q8N141 532 aa16.11■□□□□ 0.17
VPS28-209ENST00000528142 IGF2BP2-AS1Q96M15 143 aa16.11■□□□□ 0.17
VPS28-209ENST00000528142 CCDC140Q96MF4 163 aa16.11■□□□□ 0.17
VPS28-209ENST00000528142 MS4A10Q96PG2 267 aa16.11■□□□□ 0.17
VPS28-209ENST00000528142 PYGO2Q9BRQ0 406 aa16.11■□□□□ 0.17
VPS28-209ENST00000528142 LINC00527Q9UJ94 153 aa16.11■□□□□ 0.17
VPS28-209ENST00000528142 PGPA6NDG6 321 aa16.1■□□□□ 0.17
VPS28-209ENST00000528142 PEX7O00628 323 aa16.1■□□□□ 0.17
VPS28-209ENST00000528142 PPP1R2P9O14990 202 aa16.1■□□□□ 0.17
VPS28-209ENST00000528142 MRPS12O15235 138 aaKnown RBP16.1■□□□□ 0.17
VPS28-209ENST00000528142 HNF1AP20823 631 aa16.1■□□□□ 0.17
VPS28-209ENST00000528142 BLCAPP62952 87 aa16.1■□□□□ 0.17
VPS28-209ENST00000528142 TEX38Q6PEX7 206 aa16.1■□□□□ 0.17
VPS28-209ENST00000528142 FAM210BQ96KR6 192 aa16.1■□□□□ 0.17
VPS28-209ENST00000528142 EPDR1Q9UM22 224 aa16.1■□□□□ 0.17
VPS28-209ENST00000528142 ZNF98A6NK75 572 aa16.1■□□□□ 0.17
VPS28-209ENST00000528142 H3BTX0 84 aa16.1■□□□□ 0.17
VPS28-209ENST00000528142 CLEC3BP05452 202 aa16.1■□□□□ 0.17
VPS28-209ENST00000528142 GPR183P32249 361 aa16.1■□□□□ 0.17
VPS28-209ENST00000528142 RPS10P46783 165 aaKnown RBP16.1■□□□□ 0.17
VPS28-209ENST00000528142 TAS2R60P59551 318 aa16.1■□□□□ 0.17
VPS28-209ENST00000528142 RAB5BP61020 215 aa16.1■□□□□ 0.17
VPS28-209ENST00000528142 BPIFA4PQ86YQ2 179 aa16.1■□□□□ 0.17
VPS28-209ENST00000528142 LINC00479Q96M42 142 aa16.1■□□□□ 0.17
VPS28-209ENST00000528142 OR5B12Q96R08 314 aa16.1■□□□□ 0.17
VPS28-209ENST00000528142 CDC42EP3Q9UKI2 254 aa16.1■□□□□ 0.17
VPS28-209ENST00000528142 IGLV2-8P01709 118 aa16.09■□□□□ 0.17
VPS28-209ENST00000528142 IGLC2P0DOY2 106 aa16.09■□□□□ 0.17
VPS28-209ENST00000528142 S100A7AQ86SG5 101 aa16.09■□□□□ 0.17
VPS28-209ENST00000528142 EEF1AKMT3Q96AZ1 226 aa16.09■□□□□ 0.17
VPS28-209ENST00000528142 Q9H3A6 140 aa16.09■□□□□ 0.17
VPS28-209ENST00000528142 GAR1Q9NY12 217 aaKnown RBP16.09■□□□□ 0.17
VPS28-209ENST00000528142 TRBV7-1A0A0A6YYK4 115 aa16.08■□□□□ 0.17
VPS28-209ENST00000528142 BRI3O95415 125 aa16.08■□□□□ 0.17
VPS28-209ENST00000528142 PPIFP30405 207 aaKnown RBP16.08■□□□□ 0.17
VPS28-209ENST00000528142 Q6ZS46 218 aa16.08■□□□□ 0.17
VPS28-209ENST00000528142 WFDC11Q8NEX6 87 aa16.08■□□□□ 0.17
VPS28-209ENST00000528142 ZNF469Q96JG9 3925 aaPredicted RBP16.08■□□□□ 0.16
VPS28-209ENST00000528142 IGHV4-59P01825 116 aa16.08■□□□□ 0.16
VPS28-209ENST00000528142 SLC25A5P05141 298 aaKnown RBP16.08■□□□□ 0.16
VPS28-209ENST00000528142 S100PP25815 95 aa16.08■□□□□ 0.16
VPS28-209ENST00000528142 SRP14P37108 136 aaKnown RBP16.08■□□□□ 0.16
VPS28-209ENST00000528142 IER3P46695 156 aa16.08■□□□□ 0.16
VPS28-209ENST00000528142 CNN1P51911 297 aaKnown RBP16.08■□□□□ 0.16
VPS28-209ENST00000528142 GNG5P63218 68 aa16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms