RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-216ENST00000525293 A8MWV9 139 aa1.65□□□□□ -2.15
CD44-216ENST00000525293 F8W1H4 67 aa1.65□□□□□ -2.15
CD44-216ENST00000525293 TMEM250H0YL14 139 aa1.65□□□□□ -2.15
CD44-216ENST00000525293 M0R2P5 195 aa1.65□□□□□ -2.15
CD44-216ENST00000525293 LYRM1O43325 122 aa1.65□□□□□ -2.15
CD44-216ENST00000525293 TCL1BO95988 128 aa1.65□□□□□ -2.15
CD44-216ENST00000525293 SOD1P00441 154 aa1.65□□□□□ -2.15
CD44-216ENST00000525293 TRBV12-3P01733 135 aa1.65□□□□□ -2.15
CD44-216ENST00000525293 IGHV3-9P01782 118 aa1.65□□□□□ -2.15
CD44-216ENST00000525293 LINC00032P0C843 101 aa1.65□□□□□ -2.15
CD44-216ENST00000525293 OPRM1P35372 400 aa1.65□□□□□ -2.15
CD44-216ENST00000525293 INPP1P49441 399 aa1.65□□□□□ -2.15
CD44-216ENST00000525293 CCL23P55773 120 aa1.65□□□□□ -2.15
CD44-216ENST00000525293 SNRPD3P62318 126 aaKnown RBP1.65□□□□□ -2.15
CD44-216ENST00000525293 RBMY1FQ15415 496 aaKnown RBP1.65□□□□□ -2.15
CD44-216ENST00000525293 SS18Q15532 418 aa1.65□□□□□ -2.15
CD44-216ENST00000525293 LGALS9BQ3B8N2 356 aa1.65□□□□□ -2.15
CD44-216ENST00000525293 ETDBQ3ZM63 59 aa1.65□□□□□ -2.15
CD44-216ENST00000525293 NMSQ5H8A3 153 aa1.65□□□□□ -2.15
CD44-216ENST00000525293 KLF17Q5JT82 389 aaPredicted RBP1.65□□□□□ -2.15
CD44-216ENST00000525293 LGALS9CQ6DKI2 356 aa1.65□□□□□ -2.15
CD44-216ENST00000525293 IGFL3Q6UXB1 125 aa1.65□□□□□ -2.15
CD44-216ENST00000525293 DPPA3Q6W0C5 159 aa1.65□□□□□ -2.15
CD44-216ENST00000525293 Q6ZQT7 251 aa1.65□□□□□ -2.15
CD44-216ENST00000525293 Q6ZS92 163 aa1.65□□□□□ -2.15
CD44-216ENST00000525293 KRTAP5-5Q701N2 237 aaPredicted RBP1.65□□□□□ -2.15
CD44-216ENST00000525293 LCA10Q71F78 164 aa1.65□□□□□ -2.15
CD44-216ENST00000525293 FP248Q71RG6 208 aaPredicted RBP1.65□□□□□ -2.15
CD44-216ENST00000525293 MSRB3Q8IXL7 192 aa1.65□□□□□ -2.15
CD44-216ENST00000525293 DRAM1Q8N682 238 aa1.65□□□□□ -2.15
CD44-216ENST00000525293 OR10P1Q8NGE3 313 aa1.65□□□□□ -2.15
CD44-216ENST00000525293 OR8A1Q8NGG7 326 aa1.65□□□□□ -2.15
CD44-216ENST00000525293 OR51H1Q8NH63 302 aa1.65□□□□□ -2.15
CD44-216ENST00000525293 ATP6V0E2Q8NHE4 81 aa1.65□□□□□ -2.15
CD44-216ENST00000525293 GTSF1Q8WW33 167 aa1.65□□□□□ -2.15
CD44-216ENST00000525293 RBMXL1Q96E39 390 aaKnown RBP1.65□□□□□ -2.15
CD44-216ENST00000525293 IMMP2LQ96T52 175 aa1.65□□□□□ -2.15
CD44-216ENST00000525293 TBL1YQ9BQ87 522 aa1.65□□□□□ -2.15
CD44-216ENST00000525293 PARP12Q9H0J9 701 aaKnown RBP1.65□□□□□ -2.15
CD44-216ENST00000525293 LAMTOR3Q9UHA4 124 aa1.65□□□□□ -2.15
CD44-216ENST00000525293 LINC00527Q9UJ94 153 aa1.65□□□□□ -2.15
CD44-216ENST00000525293 ZNF835Q9Y2P0 537 aa1.65□□□□□ -2.15
CD44-216ENST00000525293 ARAP2Q8WZ64 1704 aa1.65□□□□□ -2.15
CD44-216ENST00000525293 DNMT1P26358 1616 aaKnown RBP1.65□□□□□ -2.15
CD44-216ENST00000525293 BIVM-ERCC5R4GMW8 1640 aa1.65□□□□□ -2.15
CD44-216ENST00000525293 CUX1P39880 1505 aa1.65□□□□□ -2.15
CD44-216ENST00000525293 SCN10AQ9Y5Y9 1956 aa1.65□□□□□ -2.15
CD44-216ENST00000525293 COL4A4P53420 1690 aaPredicted RBP1.64□□□□□ -2.15
CD44-216ENST00000525293 CUL7Q14999 1698 aa1.64□□□□□ -2.15
CD44-216ENST00000525293 DIP2BQ9P265 1576 aa1.64□□□□□ -2.15
CD44-216ENST00000525293 MTCL1Q9Y4B5 1905 aaKnown RBP1.64□□□□□ -2.15
CD44-216ENST00000525293 ABCA3Q99758 1704 aa1.64□□□□□ -2.15
CD44-216ENST00000525293 TRBV20OR9-2A0A075B6H5 130 aa1.64□□□□□ -2.15
CD44-216ENST00000525293 A0A087WWC5 75 aa1.64□□□□□ -2.15
CD44-216ENST00000525293 TRAV8-1A0A0A6YYK1 113 aa1.64□□□□□ -2.15
CD44-216ENST00000525293 IGHV1-58A0A0C4DH39 117 aa1.64□□□□□ -2.15
CD44-216ENST00000525293 TRBV7-6A0A0J9YX20 115 aa1.64□□□□□ -2.15
CD44-216ENST00000525293 A0A0J9YXV3 536 aa1.64□□□□□ -2.15
CD44-216ENST00000525293 KLF18A0A0U1RQI7 1052 aa1.64□□□□□ -2.15
CD44-216ENST00000525293 hADV29S1A0JD25 119 aa1.64□□□□□ -2.15
CD44-216ENST00000525293 PGPA6NDG6 321 aa1.64□□□□□ -2.15
CD44-216ENST00000525293 NAP1L6A6NFF2 107 aa1.64□□□□□ -2.15
CD44-216ENST00000525293 H3BT86 120 aa1.64□□□□□ -2.15
CD44-216ENST00000525293 K7EM74 188 aa1.64□□□□□ -2.15
CD44-216ENST00000525293 APOC4-APOC2K7ER74 178 aa1.64□□□□□ -2.15
CD44-216ENST00000525293 SDCBPO00560 298 aaPredicted RBP1.64□□□□□ -2.15
CD44-216ENST00000525293 COX7A2LO14548 114 aa1.64□□□□□ -2.15
CD44-216ENST00000525293 SYNGR2O43760 224 aa1.64□□□□□ -2.15
CD44-216ENST00000525293 NUPR1O60356 82 aa1.64□□□□□ -2.15
CD44-216ENST00000525293 OR1I1O60431 355 aa1.64□□□□□ -2.15
CD44-216ENST00000525293 ZNF737O75373 536 aa1.64□□□□□ -2.15
CD44-216ENST00000525293 KRTAP5-8O75690 187 aa1.64□□□□□ -2.15
CD44-216ENST00000525293 SNCGO76070 127 aa1.64□□□□□ -2.15
CD44-216ENST00000525293 FSTL3O95633 263 aa1.64□□□□□ -2.15
CD44-216ENST00000525293 APOC2P02655 101 aa1.64□□□□□ -2.15
CD44-216ENST00000525293 RBP4P02753 201 aa1.64□□□□□ -2.15
CD44-216ENST00000525293 HLA-DRB4P13762 266 aa1.64□□□□□ -2.15
CD44-216ENST00000525293 COX7CP15954 63 aa1.64□□□□□ -2.15
CD44-216ENST00000525293 MDKP21741 143 aaPredicted RBP1.64□□□□□ -2.15
CD44-216ENST00000525293 HLA-DMBP28068 263 aa1.64□□□□□ -2.15
CD44-216ENST00000525293 FAUP35544 74 aaKnown RBP1.64□□□□□ -2.15
CD44-216ENST00000525293 NCBP2P52298 156 aaKnown RBP eCLIP1.64□□□□□ -2.15
CD44-216ENST00000525293 ZNF138P52744 262 aa1.64□□□□□ -2.15
CD44-216ENST00000525293 QRFPP83859 136 aa1.64□□□□□ -2.15
CD44-216ENST00000525293 IGFBP7Q16270 282 aa1.64□□□□□ -2.15
CD44-216ENST00000525293 ORMDL2Q53FV1 153 aa1.64□□□□□ -2.15
CD44-216ENST00000525293 PYDC2Q56P42 97 aa1.64□□□□□ -2.15
CD44-216ENST00000525293 MIC13Q5XKP0 118 aa1.64□□□□□ -2.15
CD44-216ENST00000525293 MORN3Q6PF18 240 aaPredicted RBP1.64□□□□□ -2.15
CD44-216ENST00000525293 Q6ZS49 121 aa1.64□□□□□ -2.15
CD44-216ENST00000525293 SPATA12Q7Z6I5 190 aa1.64□□□□□ -2.15
CD44-216ENST00000525293 TEN1Q86WV5 123 aa1.64□□□□□ -2.15
CD44-216ENST00000525293 GPHB5Q86YW7 130 aa1.64□□□□□ -2.15
CD44-216ENST00000525293 C9orf40Q8IXQ3 194 aa1.64□□□□□ -2.15
CD44-216ENST00000525293 ZNF555Q8NEP9 628 aa1.64□□□□□ -2.15
CD44-216ENST00000525293 OR5H2Q8NGV7 314 aa1.64□□□□□ -2.15
CD44-216ENST00000525293 OR10AC1Q8NH08 325 aa1.64□□□□□ -2.15
CD44-216ENST00000525293 CLDND2Q8NHS1 167 aa1.64□□□□□ -2.15
CD44-216ENST00000525293 SCGB1C1Q8TD33 95 aa1.64□□□□□ -2.15
CD44-216ENST00000525293 RPS4Y2Q8TD47 263 aa1.64□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms